@genome-spy/core 0.41.0 → 0.42.0

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Files changed (72) hide show
  1. package/dist/bundle/index--cKb-dKG.js +615 -0
  2. package/dist/bundle/{index-gn8bhQ8w.js → index-d7k3kkin.js} +365 -366
  3. package/dist/bundle/index.es.js +4077 -3900
  4. package/dist/bundle/index.js +111 -69
  5. package/dist/schema.json +58 -6
  6. package/dist/src/data/sources/dynamic/axisGenomeSource.js +1 -1
  7. package/dist/src/data/sources/dynamic/axisTickSource.js +3 -3
  8. package/dist/src/data/sources/dynamic/bamSource.d.ts +3 -21
  9. package/dist/src/data/sources/dynamic/bamSource.d.ts.map +1 -1
  10. package/dist/src/data/sources/dynamic/bamSource.js +38 -55
  11. package/dist/src/data/sources/dynamic/bigBedSource.d.ts +2 -38
  12. package/dist/src/data/sources/dynamic/bigBedSource.d.ts.map +1 -1
  13. package/dist/src/data/sources/dynamic/bigBedSource.js +14 -71
  14. package/dist/src/data/sources/dynamic/bigWigSource.d.ts +4 -42
  15. package/dist/src/data/sources/dynamic/bigWigSource.d.ts.map +1 -1
  16. package/dist/src/data/sources/dynamic/bigWigSource.js +23 -60
  17. package/dist/src/data/sources/dynamic/gff3Source.d.ts.map +1 -1
  18. package/dist/src/data/sources/dynamic/gff3Source.js +1 -0
  19. package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts +2 -20
  20. package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts.map +1 -1
  21. package/dist/src/data/sources/dynamic/indexedFastaSource.js +23 -41
  22. package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts +23 -4
  23. package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts.map +1 -1
  24. package/dist/src/data/sources/dynamic/singleAxisLazySource.js +29 -4
  25. package/dist/src/data/sources/dynamic/singleAxisWindowedSource.d.ts +60 -0
  26. package/dist/src/data/sources/dynamic/singleAxisWindowedSource.d.ts.map +1 -0
  27. package/dist/src/data/sources/dynamic/singleAxisWindowedSource.js +152 -0
  28. package/dist/src/data/sources/dynamic/tabixSource.d.ts +6 -40
  29. package/dist/src/data/sources/dynamic/tabixSource.d.ts.map +1 -1
  30. package/dist/src/data/sources/dynamic/tabixSource.js +29 -78
  31. package/dist/src/data/transforms/regexFold.d.ts.map +1 -1
  32. package/dist/src/data/transforms/regexFold.js +8 -0
  33. package/dist/src/data/transforms/regexFold.test.js +28 -0
  34. package/dist/src/genomeSpy.d.ts +14 -0
  35. package/dist/src/genomeSpy.d.ts.map +1 -1
  36. package/dist/src/genomeSpy.js +114 -8
  37. package/dist/src/gl/webGLHelper.d.ts +6 -21
  38. package/dist/src/gl/webGLHelper.d.ts.map +1 -1
  39. package/dist/src/gl/webGLHelper.js +7 -38
  40. package/dist/src/img/90-ring-with-bg.svg +1 -0
  41. package/dist/src/img/README.md +5 -0
  42. package/dist/src/marks/link.d.ts +7 -0
  43. package/dist/src/marks/link.d.ts.map +1 -1
  44. package/dist/src/marks/link.js +72 -37
  45. package/dist/src/marks/text.d.ts.map +1 -1
  46. package/dist/src/marks/text.js +16 -17
  47. package/dist/src/spec/data.d.ts +28 -13
  48. package/dist/src/spec/mark.d.ts +0 -8
  49. package/dist/src/styles/genome-spy.css.d.ts +1 -1
  50. package/dist/src/styles/genome-spy.css.d.ts.map +1 -1
  51. package/dist/src/styles/genome-spy.css.js +33 -4
  52. package/dist/src/styles/genome-spy.scss +40 -4
  53. package/dist/src/types/viewContext.d.ts +9 -0
  54. package/dist/src/utils/binnedIndex.d.ts +2 -0
  55. package/dist/src/utils/binnedIndex.d.ts.map +1 -1
  56. package/dist/src/utils/binnedIndex.js +59 -10
  57. package/dist/src/utils/binnedIndex.test.js +46 -0
  58. package/dist/src/view/gridView.d.ts.map +1 -1
  59. package/dist/src/view/gridView.js +2 -0
  60. package/dist/src/view/layerView.d.ts.map +1 -1
  61. package/dist/src/view/layerView.js +2 -0
  62. package/dist/src/view/unitView.d.ts +0 -6
  63. package/dist/src/view/unitView.d.ts.map +1 -1
  64. package/dist/src/view/unitView.js +2 -9
  65. package/dist/src/view/view.d.ts +6 -0
  66. package/dist/src/view/view.d.ts.map +1 -1
  67. package/dist/src/view/view.js +11 -0
  68. package/package.json +3 -3
  69. package/dist/bundle/index-Cbz74kpR.js +0 -638
  70. package/dist/src/data/sources/dynamic/windowedMixin.d.ts +0 -32
  71. package/dist/src/data/sources/dynamic/windowedMixin.d.ts.map +0 -1
  72. package/dist/src/data/sources/dynamic/windowedMixin.js +0 -53
@@ -1,53 +0,0 @@
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- /** @typedef {new (...args: any[]) => any} Constructor */
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-
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- import { shallowArrayEquals } from "../../../utils/arrayUtils.js";
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-
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- /**
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- * Utils for handling data sources that are fetched in chunks.
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- *
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- * @template {!Constructor} T
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- * @param {T} superclass - The class to extend
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- */
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- export default function windowedMixin(superclass) {
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- return class FormControl extends superclass {
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- /**
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- * @type {number[]}
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- */
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- lastQuantizedInterval = [0, 0];
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-
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- /**
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- * Returns three consecutive windows. The idea is to immediately have some data
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- * to show to the user when they pan the view.
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- *
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- * @param {number[]} interval
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- * @param {number} windowSize
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- * @returns
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- */
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- quantizeInterval(interval, windowSize) {
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- return [
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- Math.max(
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- Math.floor(interval[0] / windowSize - 1) * windowSize,
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- 0
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- ),
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- Math.min(
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- Math.ceil(interval[1] / windowSize + 1) * windowSize,
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- this.genome.totalSize
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- ),
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- ];
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- }
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-
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- /**
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- *
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- * @param {number[]} interval
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- * @returns
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- */
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- checkAndUpdateLastInterval(interval) {
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- if (shallowArrayEquals(this.lastQuantizedInterval, interval)) {
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- return false;
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- }
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-
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- this.lastQuantizedInterval = interval;
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- return true;
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- }
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- };
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- }