@genome-spy/app 1.2.0 → 1.3.0

package/dist/{blosc-JROzDOnd.js → blosc-C-W97QwH.js}

@@ -187,7 +187,7 @@ var t = (typeof document < "u" && document.currentScript && document.currentScri
 		return t === -1 ? e : e.substr(0, t);
 	}, we = (e, t, n) => {
 		switch (t) {
-			case 1: return n ? (e) => d[e >> 0] : (e) => f[e >> 0];
+			case 1: return n ? (e) => d[e | 0] : (e) => f[e | 0];
 			case 2: return n ? (e) => p[e >> 1] : (e) => m[e >> 1];
 			case 4: return n ? (e) => h[e >> 2] : (e) => g[e >> 2];
 			default: throw TypeError(`invalid integer width (${t}): ${e}`);
@@ -579,8 +579,8 @@ var t = (typeof document < "u" && document.currentScript && document.currentScri
 			var n = 0;
 			return Fe().forEach((r, i) => {
 				var a = t + n;
-				for (i = g[e + 4 * i >> 2] = a, a = 0; a < r.length; ++a) d[i++ >> 0] = r.charCodeAt(a);
-				d[i >> 0] = 0, n += r.length + 1;
+				for (i = g[e + 4 * i >> 2] = a, a = 0; a < r.length; ++a) d[i++ | 0] = r.charCodeAt(a);
+				d[i | 0] = 0, n += r.length + 1;
 			}), 0;
 		},
 		u: (e, t) => {

package/dist/{canvas2d-Bd8H8MMo.js → canvas2d-8MSf70d4.js}

@@ -1,17 +1,17 @@
-import { Dt as e, _ as t, o as n, s as r, xt as i } from "./clipOptions-D_wBNhzs.js";
-import { v as a } from "./vega-scale-BoGHANI7.js";
+import { Et as e, _ as t, o as n, s as r, un as i } from "./clipOptions-SrrxeAEU.js";
+import { r as a } from "./arrayUtils-Bm7QnzhN.js";
 import { t as o } from "./warning-CpIIpk8e.js";
-import { c as s } from "./markUtils-CvLDz744.js";
+import { l as s } from "./markUtils-RaatLEa-.js";
 import { t as c } from "./rectangle-DZTR6NFQ.js";
-import { n as l, t as u } from "./layoutResult-D50MSHXR.js";
+import { n as l, r as u } from "./color-jETn8xK_.js";
 import { n as d, r as f, t as p } from "./performanceProfiler-CPLEjApa.js";
-import { A as m, C as h, D as g, E as _, I as v, L as y, M as b, N as x, P as S, S as C, _ as w, c as T, d as E, f as D, g as O, i as ee, l as te, m as ne, n as re, p as ie, u as k, v as A, w as j, x as M, y as N } from "./order-BVvkjDRT.js";
-import { n as P, t as F } from "./renderCanvas2D-DVjhp834.js";
-import { t as I } from "./canvasSizeHelper-foL2YvGL.js";
-import { exportCanvas as L, exportRaster as R } from "./rasterExport-DxvowWjH.js";
-import { createCanvas2DSvgRasterizer as z } from "./svgRasterizer-DoRQEqFA.js";
+import { C as m, D as h, E as g, F as _, L as v, N as y, P as b, R as x, S, _ as C, c as w, d as T, f as E, g as D, i as O, j as k, l as ee, m as te, n as ne, p as re, u as ie, v as ae, w as A, x as j, y as M } from "./order-BnKzKjt4.js";
+import { n as N, t as P } from "./renderCanvas2D-Y7pkRzbC.js";
+import { t as F } from "./canvasSizeHelper-foL2YvGL.js";
+import { exportCanvas as I, exportRaster as L } from "./rasterExport-C_vx4Jwd.js";
+import { createCanvas2DSvgRasterizer as R } from "./svgRasterizer-6OcftuoI.js";
 //#region ../core/src/rendering/canvas2d/picking/softwarePickingRasterizer.js
-var B = 12, V = .5, H = class {
+var z = 12, B = .5, V = class {
 	#e = [];
 	#t = [];
 	#n = [
@@ -51,7 +51,7 @@ var B = 12, V = .5, H = class {
 	}
 	setClip(e, t, n, r) {
 		if (!Number.isFinite(e) || !Number.isFinite(t) || !Number.isFinite(n) || !Number.isFinite(r)) throw RangeError("Software picking clip must be finite.");
-		this.#r = G(Math.floor(Math.min(e, n)), 0, this.buffer.width), this.#i = G(Math.floor(Math.min(t, r)), 0, this.buffer.height), this.#a = G(Math.ceil(Math.max(e, n)), this.#r, this.buffer.width), this.#o = G(Math.ceil(Math.max(t, r)), this.#i, this.buffer.height);
+		this.#r = W(Math.floor(Math.min(e, n)), 0, this.buffer.width), this.#i = W(Math.floor(Math.min(t, r)), 0, this.buffer.height), this.#a = W(Math.ceil(Math.max(e, n)), this.#r, this.buffer.width), this.#o = W(Math.ceil(Math.max(t, r)), this.#i, this.buffer.height);
 	}
 	fillRect(e, t, n, r, i) {
 		this.#s++, this.#p(e, t, n, r, i);
@@ -96,24 +96,21 @@ var B = 12, V = .5, H = class {
 		if (!(a > 0) || !Number.isFinite(a)) return;
 		this.#u++;
 		let s = a / 2, c = this.#n;
-		if (!D(t, n, r, i, this.#r - s, this.#i - s, this.#a + s, this.#o + s, c)) return;
+		if (!E(t, n, r, i, this.#r - s, this.#i - s, this.#a + s, this.#o + s, c)) return;
 		let l = c[2] - c[0], u = c[3] - c[1], d = Math.ceil(Math.max(Math.abs(l), Math.abs(u)));
-		if (d == 0) {
-			this.#h(e, c[0], c[1], s, o);
-			return;
-		}
-		for (let t = 0; t <= d; t++) {
+		if (d == 0) this.#h(e, c[0], c[1], s, o);
+		else for (let t = 0; t <= d; t++) {
 			let n = t / d;
 			this.#h(e, c[0] + l * n, c[1] + u * n, s, o);
 		}
 	}
-	strokeCubic(e, t, n, r, i, a, o, s, c, l, u = V, d) {
+	strokeCubic(e, t, n, r, i, a, o, s, c, l, u = B, d) {
 		if (!(l > 0) || !Number.isFinite(l) || !(u > 0) || !Number.isFinite(u) || !Number.isFinite(t) || !Number.isFinite(n) || !Number.isFinite(r) || !Number.isFinite(i) || !Number.isFinite(a) || !Number.isFinite(o) || !Number.isFinite(s) || !Number.isFinite(c)) return;
 		this.#d++;
 		let f = this.#e;
 		for (f.length = 0, f.push(t, n, r, i, a, o, s, c, 0); f.length;) {
 			let t = f.pop(), n = f.pop(), r = f.pop(), i = f.pop(), a = f.pop(), o = f.pop(), s = f.pop(), c = f.pop(), p = f.pop();
-			if (t >= B || U(p, c, s, o, a, i, r, n, u)) {
+			if (t >= z || H(p, c, s, o, a, i, r, n, u)) {
 				this.strokeSegment(e, p, c, r, n, l, d);
 				continue;
 			}
@@ -139,38 +136,38 @@ var B = 12, V = .5, H = class {
 		}
 	}
 };
-function U(e, t, n, r, i, a, o, s, c) {
+function H(e, t, n, r, i, a, o, s, c) {
 	let l = o - e, u = s - t, d = l * l + u * u, f = c * c;
 	if (d == 0) {
-		let o = W(e, t, n, r), s = W(e, t, i, a);
+		let o = U(e, t, n, r), s = U(e, t, i, a);
 		return Math.max(o, s) <= f;
 	}
 	let p = u * (n - e) - l * (r - t), m = u * (i - e) - l * (a - t);
 	return Math.max(p * p, m * m) <= f * d;
 }
-function W(e, t, n, r) {
+function U(e, t, n, r) {
 	let i = n - e, a = r - t;
 	return i * i + a * a;
 }
-function G(e, t, n) {
+function W(e, t, n) {
 	return Math.max(t, Math.min(n, e));
 }
 //#endregion
 //#region ../core/src/rendering/canvas2d/picking/renderers/index.js
-var K = 1;
-function q(e, t) {
+var G = 1;
+function K(e, t) {
 	let n = e.getType();
-	return n == "arrow" ? ae(e, t) : n == "rect" ? oe(e, t) : n == "point" ? se(e, t) : n == "rule" || n == "tick" ? ce(e, t) : n == "link" ? le(e, t) : n == "text" ? ue(e, t) : 0;
+	return n == "arrow" ? J(e, t) : n == "rect" ? oe(e, t) : n == "point" ? se(e, t) : n == "rule" || n == "tick" ? ce(e, t) : n == "link" ? le(e, t) : n == "text" ? ue(e, t) : 0;
 }
-function J(e) {
+function q(e) {
 	let t = e.getType();
 	return t == "rect" || t == "arrow" || t == "point" || t == "rule" || t == "tick" || t == "link" || t == "text";
 }
-function ae(e, t) {
-	let n = e, r = h(n), i = Array(8).fill(0);
-	return _(n, r, t, (e) => {
+function J(e, t) {
+	let n = e, r = m(n), i = Array(8).fill(0);
+	return g(n, r, t, (e) => {
 		let a = Y(n, e.datum), o = e.strokeWidth / 2;
-		r.stem && t.rasterizer.strokeSegment(a, e.tail.x, e.tail.y, e.tip.x, e.tip.y, e.stemHalfWidth * 2 + e.strokeWidth), j(e, (n, r, s, c) => {
+		r.stem && t.rasterizer.strokeSegment(a, e.tail.x, e.tail.y, e.tip.x, e.tip.y, e.stemHalfWidth * 2 + e.strokeWidth), A(e, (n, r, s, c) => {
 			let l = e.headHalfWidth + o, u = n + s.x * o, d = r + s.y * o, f = e.headRepeatFootprint + o, p = n - s.x * f, m = r - s.y * f;
 			de(i, u, d, p, m, c.x, c.y, l), t.rasterizer.fillConvexPolygon(a, i);
 		});
@@ -178,19 +175,22 @@ function ae(e, t) {
 }
 function oe(e, t) {
 	let n = e;
-	return ne(n, ie(n), t, (e) => t.rasterizer.fillRect(Y(n, e.datum), e.x, e.y, e.width, e.height));
+	return te(n, re(n), t, (e) => t.rasterizer.fillRect(Y(n, e.datum), e.x, e.y, e.width, e.height));
 }
 function se(e, t) {
-	let n = e, r = m(n, n.properties.minPickingSize);
-	return w(n, O(n), t, (e) => t.rasterizer.fillSquare(Y(n, e.datum), e.x, e.y, Math.max(e.boundsRadius, r / 2)));
+	let n = e, r = k(n, n.properties.minPickingSize);
+	return C(n, D(n), t, (e) => t.rasterizer.fillSquare(Y(n, e.datum), e.x, e.y, Math.max(e.boundsRadius, r / 2)));
 }
 function ce(e, t) {
-	let n = e;
-	return E(n, k(n), t, (e) => t.rasterizer.strokeSegment(Y(n, e.datum), e.x1, e.y1, e.x2, e.y2, Math.max(e.strokeWidth, K)));
+	let n = e, r = ie(n);
+	return T(n, r, t, (e) => {
+		let i = e.x2 - e.x1, a = e.y2 - e.y1, o = r.strokeCap === "square" && e.strokeWidth > 0 ? (e.size / 2 + e.strokeWidth) / Math.hypot(i, a) : 0;
+		t.rasterizer.strokeSegment(Y(n, e.datum), e.x1 - i * o, e.y1 - a * o, e.x2 + i * o, e.y2 + a * o, Math.max(e.size + 2 * e.strokeWidth, G));
+	});
 }
 function le(e, t) {
-	let n = e, r = m(n, n.properties.minPickingSize), i = A(n), a = C(n, i.shape);
-	return N(n, i, {
+	let n = e, r = k(n, n.properties.minPickingSize), i = ae(n), a = S(n, i.shape);
+	return M(n, i, {
 		...t,
 		minPickingSize: r
 	}, (e) => {
@@ -207,13 +207,13 @@ function le(e, t) {
 			}
 			return;
 		}
-		let [o, s, c, l] = i.points, u = a && M(o, l, a);
+		let [o, s, c, l] = i.points, u = a && j(o, l, a);
 		t.rasterizer.strokeCubic(Y(n, e.datum), o[0], o[1], s[0], s[1], c[0], c[1], l[0], l[1], Math.max(e.strokeWidth, r), void 0, u ? (e, t) => Math.abs(u.normalX * e + u.normalY * t - u.offset) < u.end : void 0);
 	});
 }
 function ue(e, t) {
-	let n = e, r = t.textMetrics ?? n.unitView.context.textMetrics, i = r.requestFont(n.properties), a = ee(r, n.properties);
-	return te(n, T(n), {
+	let n = e, r = t.textMetrics ?? n.unitView.context.textMetrics, i = r.requestFont(n.properties), a = O(r, n.properties);
+	return ee(n, w(n), {
 		...t,
 		fontMeasurement: i,
 		measureLogoInkBounds: a
@@ -225,11 +225,11 @@ function de(e, t, n, r, i, a, o, s) {
 }
 function Y(e, t) {
 	let n = e.encoders;
-	return g(n.uniqueId, t);
+	return h(n.uniqueId, t);
 }
 //#endregion
 //#region ../core/src/rendering/canvas2d/picking/softwarePickingViewRenderingContext.js
-var fe = class extends l {
+var fe = class extends u {
 	#e = [];
 	#t = /* @__PURE__ */ new Set();
 	#n;
@@ -252,23 +252,23 @@ var fe = class extends l {
 		if (this.#e.pop()?.view !== e) throw Error("Unbalanced software picking view rendering context stack.");
 	}
 	renderMark(e, t) {
-		if (!e.isPickingParticipant() || !J(e)) return;
+		if (!e.isPickingParticipant() || !q(e)) return;
 		let i = t.sampleFacetRenderingOptions;
-		if (i && !e.encoders.facetIndex && (this.#n?.addCount("canvasSampleFacetOccurrences"), !P(i))) {
+		if (i && !e.encoders.facetIndex && (this.#n?.addCount("canvasSampleFacetOccurrences"), !N(i))) {
 			this.#n?.addCount("canvasCulledSampleFacetOccurrences");
 			return;
 		}
 		let a = e.unitView.getEffectiveOpacity();
 		if (a <= 0) return;
-		let s = this.currentCoords, c = n(t), l = r(c, e.properties.clip, s), u = x(this.width, this.height, l);
-		if (!S(u)) return;
-		let d = b(s, c, e.properties.cullByVisibleRange), f = this.#i?.prepare(e) ?? !1;
-		y(e, t, s, this.#r, (t, n) => {
+		let s = this.currentCoords, c = n(t), l = r(c, e.properties.clip, s), u = b(this.width, this.height, l);
+		if (!_(u)) return;
+		let d = y(s, c, e.properties.cullByVisibleRange), f = this.#i?.prepare(e) ?? !1;
+		x(e, t, s, this.#r, (t, n) => {
 			if (n.length == 0) return;
 			let r = 0, i = n.length;
 			if (f && this.#i.query(n, this.#a) && (r = this.#a[0], i = this.#a[1], r === i)) return;
 			let o = this.getRasterizer();
-			o.setClip(u.x1, u.y1, u.x2, u.y2), q(e, {
+			o.setClip(u.x1, u.y1, u.x2, u.y2), K(e, {
 				rasterizer: o,
 				coords: t,
 				data: n,
@@ -282,59 +282,51 @@ var fe = class extends l {
 		}, (t) => o(`Canvas2D picking could not resolve sample facet index ${t}. View: ${e.unitView.getPathString()}`));
 	}
 	get currentCoords() {
-		let t = e(this.#e);
-		if (!t) throw Error("No current view in software picking rendering context.");
-		return t.coords;
+		let e = a(this.#e);
+		if (!e) throw Error("No current view in software picking rendering context.");
+		return e.coords;
 	}
 }, X = 2 ** 31 - 1, pe = -(2 ** 31);
-function me(e, t, n, r = n) {
-	let a = Array(e);
+function me(t, n, r, i = r) {
+	let a = Array(t);
 	a.fill(X);
-	let o = pe, s = -Infinity, c = !1, l = Array(e);
+	let o = pe, s = -Infinity, c = !1, l = Array(t);
 	l.fill(0);
-	let u = t[0], d = (t[1] - t[0]) / e, f = (t, n) => {
-		let r = (t - u) / d, a = Math.floor(r);
-		return i(n && a == r ? a - 1 : a, 0, e - 1);
+	let u = n[0], d = (n[1] - n[0]) / t, f = (n, r) => {
+		let i = (n - u) / d, a = Math.floor(i);
+		return e(r && a == i ? a - 1 : a, 0, t - 1);
 	};
-	function p(e, t, r) {
+	function p(e, t, n) {
 		if (c) return;
 		if (t > o) o = t;
 		else {
 			c = !0;
 			return;
 		}
-		let i = n(e);
+		let i = r(e);
 		if (!Number.isFinite(i) || i < s) {
 			c = !0;
 			return;
 		}
 		s = i;
 		let u = f(i, !1);
-		a[u] > t && (a[u] = t), l[u] < r && (l[u] = r);
+		a[u] > t && (a[u] = t), l[u] < n && (l[u] = n);
 	}
-	function m(e, t, i) {
+	function m(e, t, n) {
 		if (c) return;
 		if (t > o) o = t;
 		else {
 			c = !0, console.debug("Items (vertices) are not ordered properly. Disabling binned index.");
 			return;
 		}
-		let u = n(e), d = r(e);
-		if (!Number.isFinite(u) || !Number.isFinite(d)) {
-			c = !0;
-			return;
-		}
-		if (u < s) {
-			c = !0;
-			return;
-		}
-		if (d < u) {
+		let u = r(e), d = i(e);
+		if (!Number.isFinite(u) || !Number.isFinite(d) || u < s || d < u) {
 			c = !0;
 			return;
 		}
 		s = u;
 		let p = f(u, !1), m = u === d ? p : f(d, !0);
-		for (let e = p; e <= m; e++) a[e] > t && (a[e] = t), l[e] < i && (l[e] = i);
+		for (let e = p; e <= m; e++) a[e] > t && (a[e] = t), l[e] < n && (l[e] = n);
 	}
 	let h = (e, t, n = [0, 0]) => {
 		let r = f(e, !1), i = f(t, !0), o = a[r], s = Math.max(l[i], o);
@@ -346,7 +338,7 @@ function me(e, t, n, r = n) {
 		for (let t = a.length - 1; t > 0; t--) e && a[t] == X ? (a[t] = l[t], e = !1) : a[t - 1] > a[t] && (a[t - 1] = a[t]);
 		return h;
 	};
-	return p.getIndex = g, m.getIndex = g, n == r ? p : m;
+	return p.getIndex = g, m.getIndex = g, r == i ? p : m;
 }
 //#endregion
 //#region ../core/src/utils/forEachInBatch.js
@@ -372,9 +364,9 @@ function _e(e, t, n = 0) {
 }
 function ve(e) {
 	let n = e.encoders?.x, r = e.encoders?.x2;
-	if (!n?.channelDef || !("buildIndex" in n.channelDef) || !n.channelDef.buildIndex || !n.scale || !a(n.scale.type) && !["index", "locus"].includes(n.scale.type) || n.branches.length !== 1) return;
-	let i = e.getType();
-	if (i === "point" && s(e, "x") || i !== "point" && i !== "rect") return;
+	if (!n?.channelDef || !("buildIndex" in n.channelDef) || !n.channelDef.buildIndex || !n.scale || !i(n.scale.type) && !["index", "locus"].includes(n.scale.type) || n.branches.length !== 1) return;
+	let a = e.getType();
+	if (a === "point" && s(e, "x") || a !== "point" && a !== "rect") return;
 	let o = t(n)?.asNumberAccessor();
 	if (!o) return;
 	let c;
@@ -455,7 +447,7 @@ var ye = class {
 		let n = d();
 		n?.beginFrame("canvas");
 		try {
-			f("render", () => F({
+			f("render", () => P({
 				layoutResult: e,
 				context: this.context,
 				width: t.width,
@@ -482,7 +474,7 @@ var ye = class {
 			height: t.height,
 			devicePixelRatio: this.surface.getDevicePixelRatio(),
 			textMetrics: this.textMetrics,
-			getRasterizer: () => (n || (n = new H(this.surface.getPickingBuffer()), this.pickingRasterizer = n), r ||= (n.resetClip(), n.resetStatistics(), !0), n),
+			getRasterizer: () => (n || (n = new V(this.surface.getPickingBuffer()), this.pickingRasterizer = n), r ||= (n.resetClip(), n.resetStatistics(), !0), n),
 			xIndexManager: this.xIndexManager
 		}), a = d();
 		a?.beginFrame("canvas", "picking");
@@ -497,7 +489,7 @@ var ye = class {
 	}
 	#e() {
 		let e = this.surface.getLogicalCanvasSize();
-		if (!(isNaN(e.width) || isNaN(e.height))) return u(this.viewRoot, c.create(0, 0, e.width, e.height), {
+		if (!(isNaN(e.width) || isNaN(e.height))) return l(this.viewRoot, c.create(0, 0, e.width, e.height), {
 			devicePixelRatio: this.surface.getDevicePixelRatio(),
 			renderingOptions: { firstFacet: !0 }
 		});
@@ -555,7 +547,7 @@ var Ce = class {
 		if (!n) throw Error("Unable to initialize a Canvas2D rendering context.");
 		this.canvas = t, this.context = n, e.container.appendChild(t);
 		try {
-			this.#e = new I(e.container, t, e.sizeSource, () => {
+			this.#e = new F(e.container, t, e.sizeSource, () => {
 				this.#i() && e.onCanvasResize();
 			}), this.#i();
 		} catch (e) {
@@ -618,7 +610,7 @@ var Ce = class {
 //#endregion
 //#region ../core/src/rendering/canvas2d/index.js
 function we(e) {
-	let t = new Ce(e), n = re(e.container.ownerDocument);
+	let t = new Ce(e), n = ne(e.container.ownerDocument);
 	return {
 		surface: t,
 		textMetrics: n,
@@ -628,19 +620,19 @@ function we(e) {
 			context: t.context,
 			textMetrics: n
 		}),
-		exportCanvas: (e) => L({
+		exportCanvas: (e) => I({
 			...e,
 			liveSize: t.getLogicalCanvasSize(),
 			liveDevicePixelRatio: t.getDevicePixelRatio(),
 			textMetrics: n
 		}),
-		exportRaster: (e) => R({
+		exportRaster: (e) => L({
 			...e,
 			liveSize: t.getLogicalCanvasSize(),
 			liveDevicePixelRatio: t.getDevicePixelRatio(),
 			textMetrics: n
 		}),
-		rasterizeSvgRuns: (e) => z()(e),
+		rasterizeSvgRuns: (e) => R()(e),
 		readPickingId: (e, n) => t.readPickingId(e, n)
 	};
 }