@genome-spy/app 0.78.0 → 0.79.1

package/dist/{esm-CPufCnsG.js → esm-CWd6i_cL.js}

@@ -1,8 +1,8 @@
-import { n as e, r as t } from "./esm-BgpwI2cq.js";
-import { t as n } from "./esm-Bz_92nH0.js";
-import { n as r, r as i } from "./esm-C_XrKaCY.js";
-import { t as a } from "./AbortablePromiseCache-BDH1cqFl.js";
-//#region ../../node_modules/@gmod/tabix/esm/chunk.js
+import { n as e, r as t } from "./esm-Cx-EbkOj.js";
+import { t as n } from "./esm-VvpZ9hsq.js";
+import { n as r, r as i } from "./esm-BdT7qUL-.js";
+import { t as a } from "./AbortablePromiseCache-BTmAcN-t.js";
+//#region ../core/node_modules/@gmod/tabix/esm/chunk.js
 var o = class {
 	constructor(e, t, n, r) {
 		this.minv = e, this.maxv = t, this.bin = n, this._fetchedSize = r;
@@ -58,7 +58,7 @@ function u(e, t = 0) {
 	return ((e[t + 4] | e[t + 5] << 8 | e[t + 6] << 16 | e[t + 7] << 24) >>> 0) * l + (n >>> 0);
 }
 //#endregion
-//#region ../../node_modules/@gmod/tabix/esm/util.js
+//#region ../core/node_modules/@gmod/tabix/esm/util.js
 function d(e, t) {
 	return t.minv.blockPosition - e.maxv.blockPosition < 65e3 && t.maxv.blockPosition - e.minv.blockPosition < 5e6;
 }
@@ -73,7 +73,7 @@ function f(e, t) {
 	return n;
 }
 //#endregion
-//#region ../../node_modules/@gmod/tabix/esm/virtualOffset.js
+//#region ../core/node_modules/@gmod/tabix/esm/virtualOffset.js
 var p = class {
 	constructor(e, t) {
 		this.blockPosition = e, this.dataPosition = t;
@@ -89,7 +89,7 @@ function m(e, t = 0) {
 	return new p(e[t + 7] * 1099511627776 + e[t + 6] * 4294967296 + e[t + 5] * 16777216 + e[t + 4] * 65536 + e[t + 3] * 256 + e[t + 2], e[t + 1] << 8 | e[t]);
 }
 //#endregion
-//#region ../../node_modules/@gmod/tabix/esm/csi.js
+//#region ../core/node_modules/@gmod/tabix/esm/csi.js
 var h = 21582659, g = 38359875, _ = {
 	0: "generic",
 	1: "SAM",
@@ -239,49 +239,49 @@ var w = class extends s {
 			ref: r.getInt32(12, !0),
 			start: r.getInt32(16, !0),
 			end: r.getInt32(20, !0)
-		}, u = r.getInt32(24, !0), d = ((1 << 18) - 1) / 7, f = 2 ** 29, p = u ? String.fromCharCode(u) : void 0, h = r.getInt32(28, !0), g = r.getInt32(32, !0), { refNameToId: _, refIdToName: v } = this._parseNameBytes(n.slice(36, 36 + g)), y = 36 + g, b;
+		}, u = r.getInt32(24, !0), d = 2 ** 29, f = u ? String.fromCharCode(u) : void 0, p = r.getInt32(28, !0), h = r.getInt32(32, !0), { refNameToId: g, refIdToName: _ } = this._parseNameBytes(n.slice(36, 36 + h)), v = 36 + h, y;
 		return {
 			indices: Array(i).fill(0).map(() => {
-				let e = r.getInt32(y, !0);
-				y += 4;
+				let e = r.getInt32(v, !0);
+				v += 4;
 				let t = {}, i;
 				for (let a = 0; a < e; a += 1) {
-					let e = r.getUint32(y, !0);
-					if (y += 4, e > d + 1) throw Error("tabix index contains too many bins, please use a CSI index");
-					if (e === d + 1) {
-						let e = r.getInt32(y, !0);
-						y += 4, e === 2 && (i = this.parsePseudoBin(n, y)), y += 16 * e;
+					let e = r.getUint32(v, !0);
+					if (v += 4, e > 37450) throw Error("tabix index contains too many bins, please use a CSI index");
+					if (e === 37450) {
+						let e = r.getInt32(v, !0);
+						v += 4, e === 2 && (i = this.parsePseudoBin(n, v)), v += 16 * e;
 					} else {
-						let i = r.getInt32(y, !0);
-						y += 4;
+						let i = r.getInt32(v, !0);
+						v += 4;
 						let a = Array(i);
 						for (let t = 0; t < i; t += 1) {
-							let r = m(n, y), i = m(n, y + 8);
-							y += 16, b = this._findFirstData(b, r), a[t] = new o(r, i, e);
+							let r = m(n, v), i = m(n, v + 8);
+							v += 16, y = this._findFirstData(y, r), a[t] = new o(r, i, e);
 						}
 						t[e] = a;
 					}
 				}
-				let a = r.getInt32(y, !0);
-				y += 4;
+				let a = r.getInt32(v, !0);
+				v += 4;
 				let s = Array(a);
-				for (let e = 0; e < a; e += 1) s[e] = m(n, y), y += 8, b = this._findFirstData(b, s[e]);
+				for (let e = 0; e < a; e += 1) s[e] = m(n, v), v += 8, y = this._findFirstData(y, s[e]);
 				return {
 					binIndex: t,
 					linearIndex: s,
 					stats: i
 				};
 			}),
-			metaChar: p,
-			maxBinNumber: d,
-			maxRefLength: f,
-			skipLines: h,
-			firstDataLine: b,
+			metaChar: f,
+			maxBinNumber: 37449,
+			maxRefLength: d,
+			skipLines: p,
+			firstDataLine: y,
 			columnNumbers: l,
 			coordinateType: s,
 			format: c,
-			refIdToName: v,
-			refNameToId: _,
+			refIdToName: _,
+			refNameToId: g,
 			maxBlockSize: 65536
 		};
 	}

package/dist/{esm-BgpwI2cq.js → esm-Cx-EbkOj.js}

@@ -55,7 +55,7 @@ var i = class {
 	}
 };
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/utils/common.js
+//#region ../../node_modules/pako-esm2/esm/utils/common.js
 function a(e, t) {
 	return Object.prototype.hasOwnProperty.call(e, t);
 }
@@ -125,7 +125,7 @@ var c = {
 }, _ = function() {
 	let e = !0;
 	try {
-		String.fromCharCode.apply(null, new Uint8Array(1));
+		String.fromCharCode.apply(null, /* @__PURE__ */ new Uint8Array(1));
 	} catch {
 		e = !1;
 	}
@@ -175,12 +175,12 @@ function C(e, t) {
 	return n < 0 || n === 0 ? t : n + v(e[n]) > t ? n : t;
 }
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/zlib/gzheader.js
+//#region ../../node_modules/pako-esm2/esm/zlib/gzheader.js
 function w() {
 	this.text = 0, this.time = 0, this.xflags = 0, this.os = 0, this.extra = null, this.extra_len = 0, this.name = "", this.comment = "", this.hcrc = 0, this.done = !1;
 }
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/zlib/adler32.js
+//#region ../../node_modules/pako-esm2/esm/zlib/adler32.js
 function T(e, t, n, r) {
 	for (var i = e & 65535 | 0, a = e >>> 16 & 65535 | 0, o = 0; n !== 0;) {
 		o = n > 2e3 ? 2e3 : n, n -= o;
@@ -192,7 +192,7 @@ function T(e, t, n, r) {
 	return i | a << 16 | 0;
 }
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/zlib/crc32.js
+//#region ../../node_modules/pako-esm2/esm/zlib/crc32.js
 function E() {
 	for (var e, t = [], n = 0; n < 256; n++) {
 		e = n;
@@ -212,7 +212,7 @@ function O(e, t, n, r) {
 	return e ^ -1;
 }
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/zlib/inffast.js
+//#region ../../node_modules/pako-esm2/esm/zlib/inffast.js
 var k = 30, A = 12;
 function ee(e, t) {
 	var n = e.state, r = e.next_in, i, a, o, s, c, l, u, d, f, p, m, h, g, _, v, y, b, x, S, C, w, T = e.input, E;
@@ -297,7 +297,7 @@ function ee(e, t) {
 	x = m >> 3, r -= x, m -= x << 3, p &= (1 << m) - 1, e.next_in = r, e.next_out = a, e.avail_in = r < i ? 5 + (i - r) : 5 - (r - i), e.avail_out = a < s ? 257 + (s - a) : 257 - (a - s), n.hold = p, n.bits = m;
 }
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/zlib/inftrees.js
+//#region ../../node_modules/pako-esm2/esm/zlib/inftrees.js
 var j = 15, M = 852, te = 592, ne = 0, re = 1, ie = 2, ae = [
 	3,
 	4,
@@ -460,7 +460,7 @@ function N(e, t, n, r, i, a, o, s) {
 	return y !== 0 && (i[w + y] = l - g << 24 | 4194304), s.bits = p, 0;
 }
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/zlib/inflate.js
+//#region ../../node_modules/pako-esm2/esm/zlib/inflate.js
 var P = 0, F = 1, le = 2, ue = 4, de = 5, fe = 6, I = 0, pe = 1, me = 2, L = -2, he = -3, ge = -4, _e = -5, ve = 8, ye = 1, be = 2, xe = 3, Se = 4, Ce = 5, we = 6, Te = 7, Ee = 8, De = 9, Oe = 10, R = 11, z = 12, ke = 13, Ae = 14, je = 15, Me = 16, Ne = 17, Pe = 18, Fe = 19, B = 20, V = 21, Ie = 22, Le = 23, Re = 24, ze = 25, Be = 26, Ve = 27, He = 28, Ue = 29, H = 30, We = 31, Ge = 32, Ke = 852, qe = 592;
 function Je(e) {
 	return (e >>> 24 & 255) + (e >>> 8 & 65280) + ((e & 65280) << 8) + ((e & 255) << 24);
@@ -897,7 +897,7 @@ function ct(e, t) {
 	return !e || !e.state || (r = e.state, r.wrap !== 0 && r.mode !== R) ? L : r.mode === R && (i = 1, i = T(i, t, n, 0), i !== r.check) ? he : (a = it(e, t, n, n), a ? (r.mode = We, ge) : (r.havedict = 1, I));
 }
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/zlib/messages.js
+//#region ../../node_modules/pako-esm2/esm/zlib/messages.js
 var lt = {
 	2: "need dictionary",
 	1: "stream end",
@@ -910,12 +910,12 @@ var lt = {
 	"-6": "incompatible version"
 };
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/zlib/zstream.js
+//#region ../../node_modules/pako-esm2/esm/zlib/zstream.js
 function ut() {
 	this.input = null, this.next_in = 0, this.avail_in = 0, this.total_in = 0, this.output = null, this.next_out = 0, this.avail_out = 0, this.total_out = 0, this.msg = "", this.state = null, this.data_type = 2, this.adler = 0;
 }
 //#endregion
-//#region ../../node_modules/@gmod/bgzf-filehandle/node_modules/pako-esm2/esm/inflate.js
+//#region ../../node_modules/pako-esm2/esm/inflate.js
 var dt = Object.prototype.toString, ft = class e {
 	constructor(t) {
 		if (!(this instanceof e)) return new e(t);
@@ -1195,7 +1195,7 @@ function Xt(e) {
 }
 function Zt(e, t, n, r) {
 	let i = Math.max(0, n - t), a = Math.min(r, t + e.length) - t;
-	return i < e.length ? e.subarray(i, a) : new Uint8Array();
+	return i < e.length ? e.subarray(i, a) : /* @__PURE__ */ new Uint8Array();
 }
 var Qt = class {
 	filehandle;
@@ -1209,7 +1209,7 @@ var Qt = class {
 	}
 	async read(e, t) {
 		let { blocks: n, nextCompressedPosition: r } = await this.gzi.getRelevantBlocksForRead(e, t);
-		if (n.length === 0) return new Uint8Array();
+		if (n.length === 0) return /* @__PURE__ */ new Uint8Array();
 		let i = t + e;
 		return qt(await Promise.all(n.map(([e, a], o) => this.limit(async () => {
 			let s = n[o + 1]?.[0] ?? r ?? e + Yt;