@genome-spy/app 0.78.0 → 0.79.1

package/dist/{zstd-dJuUp1fl.js → zstd-YMzMcush.js}

@@ -1,4 +1,4 @@
-import { t as e } from "./chunk-INHXZS53-Dx2aFznx.js";
+import { t as e } from "./chunk-INHXZS53-CsrPGdTf.js";
 //#region ../../node_modules/numcodecs/dist/zstd.js
 var t = (typeof document < "u" && document.currentScript?.src, function(e = {}) {
 	var t, n = e, r, i, a = new Promise((e, t) => {

package/package.json

@@ -8,7 +8,7 @@
   "contributors": [],
   "license": "MIT",
   "homepage": "https://genomespy.app/",
-  "version": "0.78.0",
+  "version": "0.79.1",
   "main": "dist/index.js",
   "module": "dist/index.es.js",
   "type": "module",
@@ -70,7 +70,7 @@
     "@fortawesome/fontawesome-free": "^6.4.2",
     "@fortawesome/fontawesome-svg-core": "^6.4.2",
     "@fortawesome/free-solid-svg-icons": "^6.4.2",
-    "@genome-spy/core": "^0.78.0",
+    "@genome-spy/core": "^0.79.1",
     "@reduxjs/toolkit": "^2.11.0",
     "d3-color": "^3.1.0",
     "idb": "^7.1.1",
@@ -79,10 +79,12 @@
     "mapsort": "^1.0.5",
     "micromark": "^4.0.0",
     "redux-undo": "^1.0.1",
+    "vega-util": "2.1.0",
     "zarrita": "^0.6.1"
   },
   "devDependencies": {
-    "@genome-spy/app-agent": "^0.78.0"
+    "@genome-spy/app-agent": "^0.79.1",
+    "@genome-spy/inspector": "^0.79.1"
   },
-  "gitHead": "54041db3a590ae8df78fa43aa755b9e07fe3503c"
+  "gitHead": "bd399afa44797ccbf7da2564ccc2ab52c7aa0a72"
 }

package/src/appTypes.d.ts

@@ -6,7 +6,6 @@ export type UrlHash = Partial<BookmarkEntry>;
 
 export type AppEmbedOptions =
     import("@genome-spy/core/types/embedApi.js").EmbedOptions & {
-        showInspectorButton?: boolean;
         plugins?: AppPlugin[];
     };
 

package/src/sampleView/state/payloadTypes.d.ts

@@ -263,9 +263,16 @@ export interface PayloadWithAttribute {
 }
 
 /**
- * Payload for sorting samples in descending order by an attribute.
+ * Payload for sorting samples by an attribute.
  */
-export interface SortBy extends PayloadWithAttribute {}
+export interface SortBy extends PayloadWithAttribute {
+    /**
+     * Sort direction.
+     *
+     * __Default value:__ `"descending"`
+     */
+    order?: "ascending" | "descending";
+}
 
 /**
  * Payload for retaining the first sample of each distinct category.

package/src/spec/sampleView.d.ts

@@ -1,6 +1,7 @@
 import { Data, InlineData, UrlData } from "@genome-spy/core/spec/data.js";
 import { Align, FontStyle, FontWeight } from "@genome-spy/core/spec/font.js";
 import { Scale } from "@genome-spy/core/spec/scale.js";
+import { Title } from "@genome-spy/core/spec/title.js";
 import { ViewSpecBase, ViewBackground } from "@genome-spy/core/spec/view.js";
 import {
     AppConfigurableVisibilitySpec,
@@ -37,6 +38,15 @@ export interface SampleSpec extends Omit<ViewSpecBase, "templates"> {
      */
     sampleLayout?: SampleLayoutDef;
 
+    /**
+     * Controls how vertical axes are shown for repeated sample plots.
+     *
+     * Set to `null` to disable sample y-axes.
+     *
+     * __Default value:__ `{"mode": "all", "minSampleHeight": 60}`
+     */
+    sampleYAxis?: SampleYAxisDef | null;
+
     /**
      * An object defining the view background and outline. The background is
      * repeated for each group.
@@ -60,6 +70,28 @@ export interface SampleSpec extends Omit<ViewSpecBase, "templates"> {
     stickySummaries?: boolean;
 }
 
+export type SampleYAxisMode = "all" | "top" | "middle" | "bottom";
+
+export interface SampleYAxisDef {
+    /**
+     * How vertical axes are shown for repeated sample plots.
+     *
+     * - `"all"` shows an axis for every eligible visible sample.
+     * - `"top"`, `"middle"`, and `"bottom"` show one representative axis.
+     *
+     * __Default value:__ `"all"`
+     */
+    mode?: SampleYAxisMode;
+
+    /**
+     * Minimum visible sample height in pixels required before a repeated y-axis
+     * can be shown.
+     *
+     * __Default value:__ `60`
+     */
+    minSampleHeight?: number;
+}
+
 export type SampleAttributeType = "nominal" | "ordinal" | "quantitative";
 
 export type SampleAttributeSemanticType =
@@ -377,6 +409,15 @@ export type MetadataSourceEntry =
     | { import: MetadataSourceImportDef };
 
 export interface MetadataDef {
+    /**
+     * Title shown above metadata columns.
+     *
+     * Set to `null` to hide the metadata title.
+     *
+     * __Default value:__ `"Sample metadata"`
+     */
+    title?: string | Title | null;
+
     /**
      * Metadata source definitions used for startup and on-demand imports.
      *
@@ -443,6 +484,18 @@ export interface MetadataDef {
      * __Default value:__ `-90`
      */
     labelAngle?: number;
+
+    /**
+     * Whether metadata attribute titles reserve layout space outside the sample
+     * rows.
+     *
+     * Setting this to `false` enables wilder layouts where attribute titles
+     * may overlap nearby content. This is useful for dense metadata matrices
+     * with rotated labels.
+     *
+     * __Default value:__ `false`
+     */
+    titleReserve?: boolean;
 }
 
 export interface SampleDef {

package/dist/AbortablePromiseCache-beUIcZcW.js

@@ -1,96 +0,0 @@
-//#region ../../node_modules/@gmod/abortable-promise-cache/esm/AggregateAbortController.js
-var e = class {}, t = class {
-	constructor() {
-		this.signals = /* @__PURE__ */ new Set(), this.abortController = new AbortController();
-	}
-	addSignal(t = new e()) {
-		if (this.signal.aborted) throw Error("cannot add a signal, already aborted!");
-		this.signals.add(t), t.aborted ? this.handleAborted(t) : typeof t.addEventListener == "function" && t.addEventListener("abort", () => {
-			this.handleAborted(t);
-		});
-	}
-	handleAborted(e) {
-		this.signals.delete(e), this.signals.size === 0 && this.abortController.abort();
-	}
-	get signal() {
-		return this.abortController.signal;
-	}
-	abort() {
-		this.abortController.abort();
-	}
-}, n = class {
-	constructor() {
-		this.callbacks = /* @__PURE__ */ new Set();
-	}
-	addCallback(e = () => {}) {
-		this.callbacks.add(e), this.currentMessage && e(this.currentMessage);
-	}
-	callback(e) {
-		this.currentMessage = e;
-		for (let t of this.callbacks) t(e);
-	}
-}, r = class e {
-	constructor({ fill: e, cache: t }) {
-		if (typeof e != "function") throw TypeError("must pass a fill function");
-		if (typeof t != "object") throw TypeError("must pass a cache object");
-		if (typeof t.get != "function" || typeof t.set != "function" || typeof t.delete != "function") throw TypeError("cache must implement get(key), set(key, val), and and delete(key)");
-		this.cache = t, this.fillCallback = e;
-	}
-	static isAbortException(e) {
-		return e.name === "AbortError" || e.code === "ERR_ABORTED" || e.message === "AbortError: aborted" || e.message === "Error: aborted";
-	}
-	evict(e, t) {
-		this.cache.get(e) === t && this.cache.delete(e);
-	}
-	fill(e, r, i, a) {
-		let o = new t(), s = new n();
-		s.addCallback(a);
-		let c = {
-			aborter: o,
-			promise: this.fillCallback(r, o.signal, (e) => {
-				s.callback(e);
-			}),
-			settled: !1,
-			statusReporter: s,
-			get aborted() {
-				return this.aborter.signal.aborted;
-			}
-		};
-		c.aborter.addSignal(i), c.aborter.signal.addEventListener("abort", () => {
-			c.settled || this.evict(e, c);
-		}), c.promise.then(() => {
-			c.settled = !0;
-		}, () => {
-			c.settled = !0, this.evict(e, c);
-		}).catch((e) => {
-			throw console.error(e), e;
-		}), this.cache.set(e, c);
-	}
-	static checkSinglePromise(e, t) {
-		function n() {
-			if (t?.aborted) throw Object.assign(/* @__PURE__ */ Error("aborted"), { code: "ERR_ABORTED" });
-		}
-		return e.then((e) => (n(), e), (e) => {
-			throw n(), e;
-		});
-	}
-	has(e) {
-		return this.cache.has(e);
-	}
-	get(t, n, r, i) {
-		if (!r && n instanceof AbortSignal) throw TypeError("second get argument appears to be an AbortSignal, perhaps you meant to pass `null` for the fill data?");
-		let a = this.cache.get(t);
-		return a ? a.aborted && !a.settled ? (this.evict(t, a), this.get(t, n, r, i)) : a.settled ? a.promise : (a.aborter.addSignal(r), a.statusReporter.addCallback(i), e.checkSinglePromise(a.promise, r)) : (this.fill(t, n, r, i), e.checkSinglePromise(this.cache.get(t).promise, r));
-	}
-	delete(e) {
-		let t = this.cache.get(e);
-		t && (t.settled || t.aborter.abort(), this.cache.delete(e));
-	}
-	clear() {
-		let e = this.cache.keys(), t = 0;
-		for (let n = e.next(); !n.done; n = e.next()) this.delete(n.value), t += 1;
-		return t;
-	}
-};
-//#endregion
-export { r as t };