@gen-epix/ui 1.15.0 → 1.15.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (738) hide show
  1. package/dist/environment.d.ts +54 -0
  2. package/dist/index.d.ts +16078 -0
  3. package/dist/index.js.map +1 -0
  4. package/package.json +13 -16
  5. package/src/@types/environment.d.ts +0 -54
  6. package/src/api/api.ts +0 -43576
  7. package/src/api/base.ts +0 -111
  8. package/src/api/common.ts +0 -168
  9. package/src/api/configuration.ts +0 -118
  10. package/src/api/index.ts +0 -20
  11. package/src/assets/icons/CollectionIcon.svg +0 -1
  12. package/src/assets/icons/DnaIcon.svg +0 -1
  13. package/src/assets/icons/VirusIcon.svg +0 -1
  14. package/src/assets/logo/logo-rijksoverheid.svg +0 -42
  15. package/src/assets/logo/logo-rivm.svg +0 -6
  16. package/src/classes/Subject/Subject.ts +0 -26
  17. package/src/classes/Subject/index.ts +0 -1
  18. package/src/classes/TableEventBus/TableEventBus.ts +0 -14
  19. package/src/classes/TableEventBus/index.ts +0 -1
  20. package/src/classes/abstracts/EventBusAbstract/EventBusAbstract.ts +0 -37
  21. package/src/classes/abstracts/EventBusAbstract/index.ts +0 -1
  22. package/src/classes/abstracts/FilterAbstract/FilterAbstract.ts +0 -54
  23. package/src/classes/abstracts/FilterAbstract/index.ts +0 -1
  24. package/src/classes/abstracts/SubscribableAbstract/SubscribableAbstract.ts +0 -20
  25. package/src/classes/abstracts/SubscribableAbstract/index.ts +0 -1
  26. package/src/classes/errors/UploadError.ts +0 -11
  27. package/src/classes/errors/index.ts +0 -1
  28. package/src/classes/filters/BooleanFilter.ts +0 -31
  29. package/src/classes/filters/DateFilter.ts +0 -133
  30. package/src/classes/filters/GeoFilter.ts +0 -60
  31. package/src/classes/filters/MultiSelectFilter.ts +0 -70
  32. package/src/classes/filters/NumberRangeFilter.ts +0 -82
  33. package/src/classes/filters/SelectionFilter.ts +0 -25
  34. package/src/classes/filters/TextFilter.ts +0 -36
  35. package/src/classes/filters/TreeFilter.ts +0 -22
  36. package/src/classes/managers/AuthenticationManager/AuthenticationManager.ts +0 -94
  37. package/src/classes/managers/AuthenticationManager/index.ts +0 -1
  38. package/src/classes/managers/AuthorizationManager/AuthorizationManager.ts +0 -70
  39. package/src/classes/managers/AuthorizationManager/index.ts +0 -1
  40. package/src/classes/managers/BackendVersionManager/BackendVersionManager.ts +0 -23
  41. package/src/classes/managers/BackendVersionManager/index.ts +0 -1
  42. package/src/classes/managers/BreadcrumbManager/BreadcrumbManager.ts +0 -30
  43. package/src/classes/managers/BreadcrumbManager/index.ts +0 -1
  44. package/src/classes/managers/ConfigManager/ConfigManager.ts +0 -31
  45. package/src/classes/managers/ConfigManager/index.ts +0 -1
  46. package/src/classes/managers/DevicePixelRatioManager/DevicePixelRatioManager.ts +0 -27
  47. package/src/classes/managers/DevicePixelRatioManager/index.ts +0 -1
  48. package/src/classes/managers/EmotionCacheManager/EmotionCacheManager.ts +0 -27
  49. package/src/classes/managers/EmotionCacheManager/index.ts +0 -1
  50. package/src/classes/managers/EpiDataManager/EpiDataManager.ts +0 -196
  51. package/src/classes/managers/EpiDataManager/index.ts +0 -1
  52. package/src/classes/managers/EpiEventBusManager/EpiEventBusManager.ts +0 -61
  53. package/src/classes/managers/EpiEventBusManager/index.ts +0 -1
  54. package/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.ts +0 -32
  55. package/src/classes/managers/EpiHighlightingManager/index.ts +0 -1
  56. package/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.ts +0 -118
  57. package/src/classes/managers/EpiLineListCaseSetMembersManager/index.ts +0 -1
  58. package/src/classes/managers/FeatureFlagsManager/FeatureFlagsManager.ts +0 -30
  59. package/src/classes/managers/FeatureFlagsManager/index.ts +0 -1
  60. package/src/classes/managers/I18nManager/I18nManager.ts +0 -105
  61. package/src/classes/managers/I18nManager/index.ts +0 -1
  62. package/src/classes/managers/InactivityManager/InactivityManager.ts +0 -119
  63. package/src/classes/managers/InactivityManager/index.ts +0 -1
  64. package/src/classes/managers/KeyboardShortcutManager/KeyboardShortcutManager.ts +0 -78
  65. package/src/classes/managers/KeyboardShortcutManager/index.ts +0 -1
  66. package/src/classes/managers/LogManager/LogManager.ts +0 -151
  67. package/src/classes/managers/LogManager/index.ts +0 -1
  68. package/src/classes/managers/NavigationHistoryManager/NavigationHistoryManager.ts +0 -16
  69. package/src/classes/managers/NavigationHistoryManager/index.ts +0 -1
  70. package/src/classes/managers/NotificationManager/NotificationManager.ts +0 -104
  71. package/src/classes/managers/NotificationManager/index.ts +0 -1
  72. package/src/classes/managers/PageEventBusManager/PageEventBusManager.ts +0 -116
  73. package/src/classes/managers/PageEventBusManager/index.ts +0 -1
  74. package/src/classes/managers/QueryClientManager/QueryClientManager.ts +0 -51
  75. package/src/classes/managers/QueryClientManager/index.ts +0 -1
  76. package/src/classes/managers/RouterManager/RouterManager.ts +0 -25
  77. package/src/classes/managers/RouterManager/index.ts +0 -1
  78. package/src/classes/managers/UserSettingsManager/UserSettingsManager.ts +0 -16
  79. package/src/classes/managers/UserSettingsManager/index.ts +0 -1
  80. package/src/classes/managers/WindowManager/WindowManager.test.ts +0 -23
  81. package/src/classes/managers/WindowManager/WindowManager.ts +0 -26
  82. package/src/classes/managers/WindowManager/index.ts +0 -1
  83. package/src/components/app/App/App.tsx +0 -58
  84. package/src/components/app/App/index.ts +0 -1
  85. package/src/components/app/ApplicationBootstrap/ApplicationBootstrap.tsx +0 -223
  86. package/src/components/app/ApplicationBootstrap/index.ts +0 -1
  87. package/src/components/app/RouterRoot/RouterRoot.tsx +0 -187
  88. package/src/components/app/RouterRoot/index.ts +0 -1
  89. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.tsx +0 -347
  90. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.tsx +0 -38
  91. package/src/components/epi/EpiAddCasesToEventDialog/index.ts +0 -1
  92. package/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.tsx +0 -61
  93. package/src/components/epi/EpiBulkEditCaseDialog/index.ts +0 -1
  94. package/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.tsx +0 -137
  95. package/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.tsx +0 -127
  96. package/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.tsx +0 -111
  97. package/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.tsx +0 -377
  98. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.tsx +0 -140
  99. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.tsx +0 -23
  100. package/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.tsx +0 -89
  101. package/src/components/epi/EpiCaseInfoDialog/index.ts +0 -1
  102. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.tsx +0 -108
  103. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.tsx +0 -34
  104. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.tsx +0 -151
  105. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.tsx +0 -389
  106. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.tsx +0 -155
  107. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.tsx +0 -23
  108. package/src/components/epi/EpiCaseSetInfoDialog/index.ts +0 -1
  109. package/src/components/epi/EpiCaseSummary/EpiCaseSummary.tsx +0 -141
  110. package/src/components/epi/EpiCaseSummary/index.ts +0 -1
  111. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.tsx +0 -91
  112. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.tsx +0 -118
  113. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.tsx +0 -38
  114. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.tsx +0 -39
  115. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.tsx +0 -169
  116. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.tsx +0 -42
  117. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.tsx +0 -87
  118. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.tsx +0 -73
  119. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.tsx +0 -61
  120. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.tsx +0 -151
  121. package/src/components/epi/EpiCaseTypeInfoDialog/index.ts +0 -10
  122. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.tsx +0 -190
  123. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.tsx +0 -62
  124. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.ts +0 -1
  125. package/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.tsx +0 -87
  126. package/src/components/epi/EpiCompletCaseTypeLoader/index.ts +0 -1
  127. package/src/components/epi/EpiContactDetailsDialog/EpiContactDetailsDialog.tsx +0 -151
  128. package/src/components/epi/EpiContactDetailsDialog/index.ts +0 -1
  129. package/src/components/epi/EpiContextMenu/EpiContextMenu.tsx +0 -155
  130. package/src/components/epi/EpiContextMenu/index.ts +0 -1
  131. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.tsx +0 -386
  132. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.tsx +0 -30
  133. package/src/components/epi/EpiCreateEventDialog/index.ts +0 -1
  134. package/src/components/epi/EpiCurve/EpiCurve.tsx +0 -525
  135. package/src/components/epi/EpiCurve/index.ts +0 -1
  136. package/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.tsx +0 -27
  137. package/src/components/epi/EpiCustomTabPanel/index.ts +0 -1
  138. package/src/components/epi/EpiDashboard/EpiDashboard.tsx +0 -390
  139. package/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.tsx +0 -154
  140. package/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.tsx +0 -89
  141. package/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.tsx +0 -248
  142. package/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.tsx +0 -160
  143. package/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.tsx +0 -93
  144. package/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.tsx +0 -90
  145. package/src/components/epi/EpiDashboard/index.ts +0 -1
  146. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.tsx +0 -34
  147. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.tsx +0 -73
  148. package/src/components/epi/EpiDashboardStoreLoader/index.ts +0 -2
  149. package/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.tsx +0 -19
  150. package/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.tsx +0 -88
  151. package/src/components/epi/EpiDataCollectionAccessInfo/index.ts +0 -1
  152. package/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.tsx +0 -302
  153. package/src/components/epi/EpiFindSimilarCasesDialog/index.ts +0 -1
  154. package/src/components/epi/EpiLegendaItem/EpiLegendaItem.tsx +0 -106
  155. package/src/components/epi/EpiLegendaItem/index.ts +0 -1
  156. package/src/components/epi/EpiLineList/EpiLineList.tsx +0 -492
  157. package/src/components/epi/EpiLineList/EpiLineListPrimaryMenu.tsx +0 -189
  158. package/src/components/epi/EpiLineList/EpiLineListSecondaryMenu.tsx +0 -56
  159. package/src/components/epi/EpiLineList/EpiLineListTitle.tsx +0 -28
  160. package/src/components/epi/EpiLineList/index.ts +0 -1
  161. package/src/components/epi/EpiLineList/useEpiLineListEmitDownloadOptions.tsx +0 -102
  162. package/src/components/epi/EpiMap/EpiMap.tsx +0 -547
  163. package/src/components/epi/EpiMap/index.ts +0 -1
  164. package/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.tsx +0 -169
  165. package/src/components/epi/EpiRemoveCasesFromEventDialog/index.ts +0 -1
  166. package/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.tsx +0 -216
  167. package/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.tsx +0 -151
  168. package/src/components/epi/EpiSequenceDownloadDialog/index.ts +0 -1
  169. package/src/components/epi/EpiStratification/EpiStratification.tsx +0 -241
  170. package/src/components/epi/EpiStratification/index.ts +0 -1
  171. package/src/components/epi/EpiTree/EpiTree.tsx +0 -906
  172. package/src/components/epi/EpiTree/index.ts +0 -1
  173. package/src/components/epi/EpiTreeDescription/EpiTreeDescription.tsx +0 -71
  174. package/src/components/epi/EpiTreeDescription/index.ts +0 -1
  175. package/src/components/epi/EpiUpload/EpiUpload.tsx +0 -107
  176. package/src/components/epi/EpiUpload/EpiUploadCaseResultTable.tsx +0 -383
  177. package/src/components/epi/EpiUpload/EpiUploadCreateCases.tsx +0 -266
  178. package/src/components/epi/EpiUpload/EpiUploadMapColumns.tsx +0 -261
  179. package/src/components/epi/EpiUpload/EpiUploadMapSequences.tsx +0 -332
  180. package/src/components/epi/EpiUpload/EpiUploadNavigation.tsx +0 -52
  181. package/src/components/epi/EpiUpload/EpiUploadSelectFile.tsx +0 -285
  182. package/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.tsx +0 -375
  183. package/src/components/epi/EpiUpload/EpiUploadValidate.tsx +0 -199
  184. package/src/components/epi/EpiUpload/EpiUploadValidateNavigation.tsx +0 -34
  185. package/src/components/epi/EpiUpload/index.ts +0 -1
  186. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.tsx +0 -101
  187. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.tsx +0 -160
  188. package/src/components/epi/EpiUserRightsDialog/index.ts +0 -1
  189. package/src/components/epi/EpiWarning/EpiWarning.tsx +0 -39
  190. package/src/components/epi/EpiWarning/index.ts +0 -1
  191. package/src/components/epi/EpiWidget/EpiWidget.tsx +0 -255
  192. package/src/components/epi/EpiWidget/index.ts +0 -1
  193. package/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.tsx +0 -40
  194. package/src/components/epi/EpiWidgetHeaderIconButton/index.ts +0 -1
  195. package/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.tsx +0 -56
  196. package/src/components/epi/EpiWidgetMenu/index.ts +0 -1
  197. package/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.tsx +0 -51
  198. package/src/components/epi/EpiWidgetUnavailable/index.ts +0 -1
  199. package/src/components/filters/BooleanFilterField/BooleanFilterField.tsx +0 -26
  200. package/src/components/filters/BooleanFilterField/index.ts +0 -1
  201. package/src/components/filters/DateFilterField/DateFilterField.tsx +0 -23
  202. package/src/components/filters/DateFilterField/index.ts +0 -1
  203. package/src/components/filters/GeoFilterField/GeoFilterField.tsx +0 -32
  204. package/src/components/filters/GeoFilterField/index.ts +0 -1
  205. package/src/components/filters/MultiSelectFilterField/MultiSelectFilterField.tsx +0 -31
  206. package/src/components/filters/MultiSelectFilterField/index.ts +0 -1
  207. package/src/components/filters/NumberRangeFilterField/NumberRangeFilterField.tsx +0 -20
  208. package/src/components/filters/NumberRangeFilterField/index.ts +0 -1
  209. package/src/components/filters/TextFilterField/TextFilterField.tsx +0 -18
  210. package/src/components/filters/TextFilterField/index.ts +0 -1
  211. package/src/components/form/fields/Autocomplete/Autocomplete.tsx +0 -270
  212. package/src/components/form/fields/Autocomplete/index.ts +0 -1
  213. package/src/components/form/fields/CheckboxGroup/CheckboxGroup.tsx +0 -192
  214. package/src/components/form/fields/CheckboxGroup/index.ts +0 -1
  215. package/src/components/form/fields/DatePicker/DatePicker.tsx +0 -167
  216. package/src/components/form/fields/DatePicker/index.ts +0 -1
  217. package/src/components/form/fields/DateRangePicker/DateRangePicker.tsx +0 -359
  218. package/src/components/form/fields/DateRangePicker/index.ts +0 -1
  219. package/src/components/form/fields/NumberField/NumberField.tsx +0 -277
  220. package/src/components/form/fields/NumberField/index.ts +0 -1
  221. package/src/components/form/fields/NumberRangeInput/NumberRangeInput.tsx +0 -297
  222. package/src/components/form/fields/NumberRangeInput/index.ts +0 -1
  223. package/src/components/form/fields/RadioGroup/RadioGroup.tsx +0 -130
  224. package/src/components/form/fields/RadioGroup/index.ts +0 -1
  225. package/src/components/form/fields/RichTextEditor/RichTextEditor.tsx +0 -321
  226. package/src/components/form/fields/RichTextEditor/RichTextEditorContent.tsx +0 -34
  227. package/src/components/form/fields/RichTextEditor/index.ts +0 -2
  228. package/src/components/form/fields/RichTextEditor/useRichTextEditorExtensions.ts +0 -174
  229. package/src/components/form/fields/Select/Select.tsx +0 -219
  230. package/src/components/form/fields/Select/index.ts +0 -1
  231. package/src/components/form/fields/Switch/Switch.tsx +0 -116
  232. package/src/components/form/fields/Switch/index.ts +0 -1
  233. package/src/components/form/fields/TextField/TextField.tsx +0 -170
  234. package/src/components/form/fields/TextField/index.ts +0 -1
  235. package/src/components/form/fields/ToggleButtonGroup/ToggleButtonGroup.tsx +0 -118
  236. package/src/components/form/fields/ToggleButtonGroup/index.ts +0 -1
  237. package/src/components/form/fields/TransferList/TransferList.tsx +0 -360
  238. package/src/components/form/fields/TransferList/index.ts +0 -1
  239. package/src/components/form/fields/UploadButton/UploadButton.tsx +0 -157
  240. package/src/components/form/helpers/FormFieldHelperText/FormFieldHelperText.tsx +0 -68
  241. package/src/components/form/helpers/FormFieldHelperText/index.ts +0 -1
  242. package/src/components/form/helpers/FormFieldLoadingIndicator/FormFieldLoadingIndicator.tsx +0 -22
  243. package/src/components/form/helpers/FormFieldLoadingIndicator/index.ts +0 -1
  244. package/src/components/form/helpers/GenericForm/GenericForm.tsx +0 -187
  245. package/src/components/form/helpers/GenericForm/index.ts +0 -1
  246. package/src/components/ui/ApplicationBar/ApplicationBar.tsx +0 -74
  247. package/src/components/ui/ApplicationBar/ApplicationBarActions.tsx +0 -124
  248. package/src/components/ui/ApplicationBar/ApplicationBarActionsFeedbackItem.tsx +0 -102
  249. package/src/components/ui/ApplicationBar/ApplicationBarActionsInfotem.tsx +0 -60
  250. package/src/components/ui/ApplicationBar/ApplicationBarActionsNotificationsItem.tsx +0 -82
  251. package/src/components/ui/ApplicationBar/ApplicationBarActionsOrganizationSwitcherItem.tsx +0 -58
  252. package/src/components/ui/ApplicationBar/ApplicationBarActionsOutagesItem.tsx +0 -75
  253. package/src/components/ui/ApplicationBar/ApplicationBarActionsUserItem.tsx +0 -60
  254. package/src/components/ui/ApplicationBar/ApplicationBarNavigationMenu.tsx +0 -159
  255. package/src/components/ui/ApplicationBar/InfoMenu.tsx +0 -120
  256. package/src/components/ui/ApplicationBar/UserMenu.tsx +0 -208
  257. package/src/components/ui/ApplicationBar/UserOrganizationAdminMenuItem.tsx +0 -69
  258. package/src/components/ui/ApplicationBar/UserOwnOrganizationMenuItem.tsx +0 -54
  259. package/src/components/ui/ApplicationBar/index.ts +0 -1
  260. package/src/components/ui/ApplicationFooter/ApplicationFooter.tsx +0 -121
  261. package/src/components/ui/ApplicationFooter/ApplicationFooterLink.tsx +0 -48
  262. package/src/components/ui/ApplicationFooter/ApplicationFooterLinkSection.tsx +0 -56
  263. package/src/components/ui/ApplicationFooter/index.ts +0 -1
  264. package/src/components/ui/AuthenticationWrapper/AuthenticationWrapper.tsx +0 -208
  265. package/src/components/ui/AuthenticationWrapper/index.ts +0 -1
  266. package/src/components/ui/AuthorizationWrapper/AuthorizationWrapper.tsx +0 -75
  267. package/src/components/ui/AuthorizationWrapper/index.ts +0 -1
  268. package/src/components/ui/Breadcrumbs/Breadcrumbs.tsx +0 -92
  269. package/src/components/ui/Breadcrumbs/index.ts +0 -1
  270. package/src/components/ui/Confirmation/Confirmation.tsx +0 -10
  271. package/src/components/ui/Confirmation/ConfirmationRender.tsx +0 -81
  272. package/src/components/ui/Confirmation/index.ts +0 -2
  273. package/src/components/ui/ConsentDialog/ConsentDialog.tsx +0 -57
  274. package/src/components/ui/ConsentDialog/index.ts +0 -1
  275. package/src/components/ui/CopyToClipboardButton/CopyToClipboardButton.tsx +0 -94
  276. package/src/components/ui/CopyToClipboardButton/index.ts +0 -1
  277. package/src/components/ui/Dialog/Dialog.tsx +0 -196
  278. package/src/components/ui/Dialog/index.ts +0 -1
  279. package/src/components/ui/FileSelector/FileSelector.tsx +0 -358
  280. package/src/components/ui/FileSelector/index.ts +0 -1
  281. package/src/components/ui/GenericErrorMessage/GenericErrorMessage.tsx +0 -168
  282. package/src/components/ui/GenericErrorMessage/index.ts +0 -1
  283. package/src/components/ui/HomePageTrends/HomePageTrendCard.tsx +0 -132
  284. package/src/components/ui/HomePageTrends/HomePageTrends.tsx +0 -312
  285. package/src/components/ui/HomePageTrends/index.ts +0 -1
  286. package/src/components/ui/LicensesDialog/LicensesDialog.tsx +0 -231
  287. package/src/components/ui/LicensesDialog/index.ts +0 -1
  288. package/src/components/ui/LinearProgressWithLabel/LinearProgressWithLabel.tsx +0 -31
  289. package/src/components/ui/LinearProgressWithLabel/index.ts +0 -1
  290. package/src/components/ui/LoadingIndicator/LoadingIndicator.tsx +0 -11
  291. package/src/components/ui/LoadingIndicator/index.ts +0 -1
  292. package/src/components/ui/MyPermissionsDialog/MyPermissionsDialog.tsx +0 -95
  293. package/src/components/ui/MyPermissionsDialog/index.ts +0 -1
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  604. package/src/pages/RegionsAdminPage/index.ts +0 -1
  605. package/src/pages/RouterErrorPage/RouterErrorPage.tsx +0 -23
  606. package/src/pages/RouterErrorPage/index.ts +0 -1
  607. package/src/pages/TrendsPage/TrendsPage.tsx +0 -17
  608. package/src/pages/TrendsPage/index.ts +0 -1
  609. package/src/pages/UploadPage/UploadPage.tsx +0 -40
  610. package/src/pages/UploadPage/index.ts +0 -1
  611. package/src/pages/UserAccessCasePoliciesAdminPage/UserAccessCasePoliciesAdminPage.tsx +0 -209
  612. package/src/pages/UserAccessCasePoliciesAdminPage/index.ts +0 -1
  613. package/src/pages/UserEffectiveRightsAdminPage/UserEffectiveRightsAdminPage.tsx +0 -331
  614. package/src/pages/UserEffectiveRightsAdminPage/index.ts +0 -1
  615. package/src/pages/UserEffectiveRightsTesterAdminPage/UserEffectiveRightsTesterAdminPage.tsx +0 -283
  616. package/src/pages/UserEffectiveRightsTesterAdminPage/index.ts +0 -1
  617. package/src/pages/UserInvitationsAdminPage/UserInvitationConsumeDialog.tsx +0 -143
  618. package/src/pages/UserInvitationsAdminPage/UserInvitationShareDialog.tsx +0 -100
  619. package/src/pages/UserInvitationsAdminPage/UserInvitationsAdminPage.tsx +0 -218
  620. package/src/pages/UserInvitationsAdminPage/index.ts +0 -1
  621. package/src/pages/UserShareCasePoliciesAdminPage/UserShareCasePoliciesAdminPage.tsx +0 -183
  622. package/src/pages/UserShareCasePoliciesAdminPage/index.ts +0 -1
  623. package/src/pages/UsersAdminPage/UsersAdminPage.tsx +0 -240
  624. package/src/pages/UsersAdminPage/index.ts +0 -1
  625. package/src/routes/adminRoutes.tsx +0 -801
  626. package/src/routes/index.ts +0 -2
  627. package/src/routes/routes.tsx +0 -235
  628. package/src/setup/index.ts +0 -1
  629. package/src/setup/setup.ts +0 -5
  630. package/src/setup/yup.ts +0 -203
  631. package/src/stores/epiDashboardStore/epiDashboardStore.ts +0 -750
  632. package/src/stores/epiDashboardStore/epiDashboardStoreContext.tsx +0 -6
  633. package/src/stores/epiDashboardStore/index.ts +0 -2
  634. package/src/stores/epiUploadStore/epiUploadStore.ts +0 -351
  635. package/src/stores/epiUploadStore/epiUploadStoreContext.tsx +0 -6
  636. package/src/stores/epiUploadStore/index.ts +0 -2
  637. package/src/stores/oidcStore/index.ts +0 -1
  638. package/src/stores/oidcStore/oidcStore.ts +0 -43
  639. package/src/stores/outagesStore/index.ts +0 -1
  640. package/src/stores/outagesStore/outagesStore.ts +0 -31
  641. package/src/stores/tableStore/TableStoreContext.tsx +0 -6
  642. package/src/stores/tableStore/TableStoreContextProvider.tsx +0 -20
  643. package/src/stores/tableStore/index.ts +0 -4
  644. package/src/stores/tableStore/tableStore.ts +0 -547
  645. package/src/stores/tableStore/useTableStoreContext.tsx +0 -7
  646. package/src/stores/userProfileStore/index.ts +0 -1
  647. package/src/stores/userProfileStore/userProfileStore.ts +0 -112
  648. package/src/test/integration/lib/render.tsx +0 -33
  649. package/src/test/integration/tests/integration-example/HelloWorld.test.tsx +0 -14
  650. package/src/test/integration/tests/integration-example/HelloWorld.tsx +0 -9
  651. package/src/test/setup-browser.ts +0 -3
  652. package/src/test/setup-jsdom.ts +0 -6
  653. package/src/test/setup.ts +0 -9
  654. package/src/utils/AbacUtil/AbacUtil.ts +0 -21
  655. package/src/utils/AbacUtil/index.ts +0 -1
  656. package/src/utils/AxiosUtil/AxiosUtil.test.ts +0 -66
  657. package/src/utils/AxiosUtil/AxiosUtil.ts +0 -47
  658. package/src/utils/AxiosUtil/index.ts +0 -1
  659. package/src/utils/CaseSelectionUtil/CaseSelectionUtil.ts +0 -32
  660. package/src/utils/CaseSelectionUtil/index.ts +0 -1
  661. package/src/utils/CaseSetUtil/CaseSetUtil.ts +0 -13
  662. package/src/utils/CaseSetUtil/index.ts +0 -1
  663. package/src/utils/CaseTypeUtil/CaseTypeUtil.ts +0 -178
  664. package/src/utils/CaseTypeUtil/index.ts +0 -1
  665. package/src/utils/CaseUtil/CaseUtil.ts +0 -401
  666. package/src/utils/CaseUtil/index.ts +0 -1
  667. package/src/utils/DashboardUtil/DashboardUtil.ts +0 -46
  668. package/src/utils/DashboardUtil/index.ts +0 -1
  669. package/src/utils/DataHookUtil/DataHookUtil.ts +0 -137
  670. package/src/utils/DataHookUtil/index.ts +0 -1
  671. package/src/utils/DataSetUtil/DataSetUtil.ts +0 -70
  672. package/src/utils/DataSetUtil/index.ts +0 -1
  673. package/src/utils/DataUtil/DataUtil.ts +0 -84
  674. package/src/utils/DataUtil/index.ts +0 -1
  675. package/src/utils/DownloadUtil/DownloadUtil.ts +0 -237
  676. package/src/utils/DownloadUtil/index.ts +0 -1
  677. package/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.ts +0 -142
  678. package/src/utils/EffectiveRightsUtil/index.ts +0 -1
  679. package/src/utils/EpiCurveUtil/EpiCurveUtil.ts +0 -180
  680. package/src/utils/EpiCurveUtil/index.ts +0 -1
  681. package/src/utils/EpiFilterUtil/EpiFilterUtil.ts +0 -232
  682. package/src/utils/EpiFilterUtil/index.ts +0 -1
  683. package/src/utils/EpiLineListUtil/EpiLineListUtil.ts +0 -15
  684. package/src/utils/EpiLineListUtil/index.ts +0 -1
  685. package/src/utils/EpiMapUtil/EpiMapUtil.test.ts +0 -54
  686. package/src/utils/EpiMapUtil/EpiMapUtil.ts +0 -80
  687. package/src/utils/EpiMapUtil/index.ts +0 -1
  688. package/src/utils/EpiTreeUtil/EpiTreeUtil.test.ts +0 -2467
  689. package/src/utils/EpiTreeUtil/EpiTreeUtil.ts +0 -1055
  690. package/src/utils/EpiTreeUtil/index.ts +0 -1
  691. package/src/utils/EpiUploadUtil/EpiUploadUtil.ts +0 -857
  692. package/src/utils/EpiUploadUtil/index.ts +0 -1
  693. package/src/utils/FileUtil/FileUtil.ts +0 -22
  694. package/src/utils/FileUtil/index.ts +0 -1
  695. package/src/utils/FormUtil/FormUtil.test.ts +0 -36
  696. package/src/utils/FormUtil/FormUtil.ts +0 -63
  697. package/src/utils/FormUtil/index.ts +0 -1
  698. package/src/utils/MenuDataUtil/MenuDataUtil.ts +0 -54
  699. package/src/utils/MenuDataUtil/index.ts +0 -1
  700. package/src/utils/NewickUtil/NewickUtil.test.ts +0 -187
  701. package/src/utils/NewickUtil/NewickUtil.ts +0 -69
  702. package/src/utils/NewickUtil/index.ts +0 -1
  703. package/src/utils/NotificationUtil/NotificationUtil.ts +0 -28
  704. package/src/utils/NotificationUtil/index.ts +0 -1
  705. package/src/utils/NumberUtil/NumberUtil.test.ts +0 -113
  706. package/src/utils/NumberUtil/NumberUtil.ts +0 -67
  707. package/src/utils/NumberUtil/index.ts +0 -1
  708. package/src/utils/ObjectUtil/ObjectUtil.test.ts +0 -43
  709. package/src/utils/ObjectUtil/ObjectUtil.ts +0 -28
  710. package/src/utils/ObjectUtil/index.ts +0 -1
  711. package/src/utils/OutageUtil/OutageUtil.test.ts +0 -108
  712. package/src/utils/OutageUtil/OutageUtil.ts +0 -81
  713. package/src/utils/OutageUtil/index.ts +0 -1
  714. package/src/utils/QueryUtil/QueryUtil.test.ts +0 -42
  715. package/src/utils/QueryUtil/QueryUtil.ts +0 -105
  716. package/src/utils/QueryUtil/index.ts +0 -1
  717. package/src/utils/StringUtil/StringUtil.test.ts +0 -61
  718. package/src/utils/StringUtil/StringUtil.ts +0 -91
  719. package/src/utils/StringUtil/index.ts +0 -1
  720. package/src/utils/TableUtil/TableUtil.ts +0 -665
  721. package/src/utils/TableUtil/index.ts +0 -1
  722. package/src/utils/TestIdUtil/TestIdUtil.test.ts +0 -12
  723. package/src/utils/TestIdUtil/TestIdUtil.ts +0 -13
  724. package/src/utils/TestIdUtil/index.ts +0 -1
  725. package/src/utils/TimeUtil/TimeUtil.ts +0 -38
  726. package/src/utils/TimeUtil/index.ts +0 -1
  727. package/src/utils/UserManagerUtil/UserManagerUtil.test.ts +0 -41
  728. package/src/utils/UserManagerUtil/UserManagerUtil.ts +0 -39
  729. package/src/utils/UserManagerUtil/index.ts +0 -1
  730. package/src/utils/ValidationUtil/ValidationUtil.test.ts +0 -61
  731. package/src/utils/ValidationUtil/ValidationUtil.ts +0 -56
  732. package/src/utils/ValidationUtil/index.ts +0 -1
  733. /package/{src → dist}/locale/en.json +0 -0
  734. /package/{src → dist}/locale/nl.json +0 -0
  735. /package/{src/@types → dist}/mui.d.ts +0 -0
  736. /package/{src/@types → dist}/ui.d.ts +0 -0
  737. /package/{src/@types → dist}/vite-env.d.ts +0 -0
  738. /package/{src/@types → dist}/yup.d.ts +0 -0
@@ -1,401 +0,0 @@
1
- import { isValid } from 'date-fns';
2
- import { t } from 'i18next';
3
- import type { ObjectSchema } from 'yup';
4
- import {
5
- object,
6
- string,
7
- } from 'yup';
8
- import type { UseQueryResult } from '@tanstack/react-query';
9
- import difference from 'lodash/difference';
10
- import intersection from 'lodash/intersection';
11
-
12
- import { CaseTypeUtil } from '../CaseTypeUtil';
13
- import { AbacUtil } from '../AbacUtil';
14
- import { QueryUtil } from '../QueryUtil';
15
- import type {
16
- CaseDataCollectionLink,
17
- CompleteCaseType,
18
- Organization,
19
- Case,
20
- Col,
21
- RefCol,
22
- } from '../../api';
23
- import {
24
- CaseApi,
25
- ColType,
26
- } from '../../api';
27
- import { ConfigManager } from '../../classes/managers/ConfigManager';
28
- import { NotificationManager } from '../../classes/managers/NotificationManager';
29
- import type { CaseTypeRowValue } from '../../models/epi';
30
- import type { FormFieldDefinition } from '../../models/form';
31
- import { FORM_FIELD_DEFINITION_TYPE } from '../../models/form';
32
- import { QUERY_KEY } from '../../models/query';
33
- import { EpiDataManager } from '../../classes/managers/EpiDataManager';
34
-
35
- export class CaseUtil {
36
- public static async applyDataCollectionLinks(kwArgs: { caseSetId?: string; caseSetDataCollectionIds: string[]; caseIds?: string[]; caseTypeId: string }): Promise<void> {
37
- const { caseSetId, caseSetDataCollectionIds, caseIds, caseTypeId } = kwArgs;
38
-
39
- if (!caseSetId && !caseIds) {
40
- throw new Error('Either caseSetId or caseIds must be provided');
41
- }
42
-
43
- const notificationKey = NotificationManager.instance.showNotification({
44
- message: t('Applying sharing to the cases'),
45
- isLoading: true,
46
- severity: 'info',
47
- });
48
-
49
- try {
50
- if (!caseSetDataCollectionIds.length) {
51
- NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because the event is not shared.'), 'info');
52
- }
53
-
54
- let normalizedCaseIds: string[] = [];
55
- if (caseIds) {
56
- normalizedCaseIds = caseIds;
57
- } else {
58
- normalizedCaseIds = (await CaseApi.instance.caseSetMembersPostQuery({
59
- invert: false,
60
- key: 'case_set_id',
61
- type: 'UUID_SET',
62
- members: [caseSetId],
63
- })).data.map(x => x.case_id);
64
- }
65
-
66
- if (!normalizedCaseIds.length) {
67
- NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because there are no cases in the event.'), 'info');
68
- }
69
-
70
- const dataLinksToAdd: CaseDataCollectionLink[] = [];
71
- const caseRights = (await CaseApi.instance.retrieveCaseRights({
72
- case_ids: normalizedCaseIds,
73
- case_type_id: caseTypeId,
74
- })).data;
75
-
76
- caseRights.forEach((caseRight) => {
77
- const caseId = caseRight.case_id;
78
- const caseMissingDataCollectionIds = difference(caseSetDataCollectionIds, caseRight.shared_in_data_collection_ids);
79
- if (!caseMissingDataCollectionIds.length) {
80
- return;
81
- }
82
-
83
- (caseRight.is_full_access ? caseMissingDataCollectionIds : intersection(caseRight.add_data_collection_ids, caseSetDataCollectionIds)).forEach((dataCollectionId) => {
84
- const dataLink: CaseDataCollectionLink = {
85
- case_id: caseId,
86
- data_collection_id: dataCollectionId,
87
- };
88
- dataLinksToAdd.push(dataLink);
89
- });
90
- });
91
-
92
- if (!dataLinksToAdd.length) {
93
- NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because sharing has already been applied.'), 'info');
94
- return;
95
- }
96
-
97
- // Batch add the data collection links
98
- await CaseApi.instance.caseDataCollectionLinksPostSome(dataLinksToAdd);
99
- await QueryUtil.invalidateQueryKeys(QueryUtil.getQueryKeyDependencies([QUERY_KEY.CASE_DATA_COLLECTION_LINKS], true));
100
- NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing has been applied to the cases'), 'success');
101
-
102
- } catch (_error) {
103
- NotificationManager.instance.fulfillNotification(notificationKey, t('Sharing could not be applied to selected cases due to an error.'), 'error');
104
- }
105
- }
106
-
107
- public static createFormFieldDefinitions(completeCaseType: CompleteCaseType, organizationsQueryResult: UseQueryResult<Organization[]>): FormFieldDefinition<Case['content']>[] {
108
- const cols = CaseTypeUtil.getCols(completeCaseType);
109
- const effectiveColumnAccessRights = AbacUtil.createEffectieveColumnAccessRights(Object.values(completeCaseType.case_type_access_abacs));
110
- return cols.reduce((acc, col) => {
111
- const hasAccess = effectiveColumnAccessRights.get(col.id)?.write;
112
- if (!hasAccess) {
113
- return acc;
114
- }
115
-
116
- const refCol = completeCaseType.ref_cols[col.ref_col_id];
117
- switch (refCol.col_type) {
118
- case ColType.TEXT:
119
- case ColType.ID_SAMPLE:
120
- case ColType.ID_CASE:
121
- case ColType.ID_EVENT:
122
- case ColType.ID_GENETIC_SEQUENCE:
123
- case ColType.ID_PERSON:
124
- case ColType.TIME_WEEK:
125
- case ColType.TIME_MONTH:
126
- case ColType.TIME_QUARTER:
127
- case ColType.TIME_YEAR:
128
- case ColType.DECIMAL_0:
129
- case ColType.DECIMAL_1:
130
- case ColType.DECIMAL_2:
131
- case ColType.DECIMAL_3:
132
- case ColType.DECIMAL_4:
133
- case ColType.DECIMAL_5:
134
- case ColType.DECIMAL_6:
135
- acc.push({
136
- definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,
137
- name: col.id,
138
- label: col.label,
139
- } as const satisfies FormFieldDefinition<Case['content']>);
140
- break;
141
- case ColType.REGULAR_LANGUAGE:
142
- try {
143
- new RegExp(col.pattern);
144
- acc.push({
145
- definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,
146
- name: col.id,
147
- label: col.label,
148
- } as const satisfies FormFieldDefinition<Case['content']>);
149
- } catch (_error) {
150
- acc.push({
151
- definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,
152
- name: col.id,
153
- label: col.label,
154
- warningMessage: t`Unable to parse regular expression. You may enter text, but it's not guaranteed to be valid.`,
155
- } as const satisfies FormFieldDefinition<Case['content']>);
156
- }
157
- break;
158
- case ColType.NOMINAL:
159
- case ColType.ORDINAL:
160
- case ColType.INTERVAL:
161
- if (EpiDataManager.instance.data.conceptsBySetId[refCol.concept_set_id]) {
162
- acc.push({
163
- definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE,
164
- name: col.id,
165
- label: col.label,
166
- options: EpiDataManager.instance.data.conceptsBySetId[refCol.concept_set_id].map(concept => ({
167
- value: concept.id,
168
- label: concept.name,
169
- })),
170
- } as const satisfies FormFieldDefinition<Case['content']>);
171
- }
172
- break;
173
- case ColType.GEO_REGION:
174
- if (EpiDataManager.instance.data.regionsByRegionSetId[refCol.region_set_id]) {
175
- acc.push({
176
- definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE,
177
- name: col.id,
178
- label: col.label,
179
- options: EpiDataManager.instance.data.regionsByRegionSetId[refCol.region_set_id].map(region => ({
180
- value: region.id,
181
- label: EpiDataManager.instance.data.regionSets[refCol.region_set_id].region_code_as_label ? region.code : region.name,
182
- })),
183
- } as const satisfies FormFieldDefinition<Case['content']>);
184
- }
185
- break;
186
- case ColType.ORGANIZATION:
187
- acc.push({
188
- definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE,
189
- name: col.id,
190
- label: col.label,
191
- loading: organizationsQueryResult.isLoading,
192
- options: (organizationsQueryResult.data ?? []).map(organization => ({
193
- value: organization.id,
194
- label: organization.name,
195
- })),
196
- } as const satisfies FormFieldDefinition<Case['content']>);
197
- break;
198
- default:
199
- break;
200
- }
201
-
202
- return acc;
203
- }, [] as FormFieldDefinition<Case['content']>[]);
204
- }
205
-
206
- public static createYupSchema(completeCaseType: CompleteCaseType): ObjectSchema<{ [key: string]: string }> {
207
- const effectiveColumnAccessRights = AbacUtil.createEffectieveColumnAccessRights(Object.values(completeCaseType.case_type_access_abacs));
208
-
209
- return CaseTypeUtil.getCols(completeCaseType).reduce((s, col) => {
210
- const hasAccess = effectiveColumnAccessRights.get(col.id)?.write;
211
- if (!hasAccess) {
212
- return s;
213
- }
214
-
215
- const refCol = completeCaseType.ref_cols[col.ref_col_id];
216
- switch (refCol.col_type) {
217
- case ColType.TEXT:
218
- return s.concat(object().shape({
219
- [col.id]: string().nullable().extendedAlphaNumeric().max(65535).transform((_val: unknown, orig: string) => orig || null),
220
- }));
221
- case ColType.ID_SAMPLE:
222
- case ColType.ID_CASE:
223
- case ColType.ID_EVENT:
224
- case ColType.ID_GENETIC_SEQUENCE:
225
- case ColType.ID_PERSON:
226
- return s.concat(object().shape({
227
- [col.id]: string().nullable().extendedAlphaNumeric().max(255).transform((_val: unknown, orig: string) => orig || null),
228
- }));
229
- case ColType.NOMINAL:
230
- case ColType.ORDINAL:
231
- case ColType.INTERVAL:
232
- case ColType.GEO_REGION:
233
- case ColType.ORGANIZATION:
234
- return s.concat(object().shape({
235
- [col.id]: string().nullable().uuid4().transform((_val: unknown, orig: string) => orig || null),
236
- }));
237
- case ColType.GEO_LATLON:
238
- return s.concat(object().shape({
239
- [col.id]: string().nullable().latLong().transform((_val: unknown, orig: string) => orig || null),
240
- }));
241
- case ColType.DECIMAL_0:
242
- return s.concat(object().shape({
243
- [col.id]: string().nullable().decimal0().transform((_val: unknown, orig: string) => orig || null),
244
- }));
245
- case ColType.DECIMAL_1:
246
- return s.concat(object().shape({
247
- [col.id]: string().nullable().decimal1().transform((_val: unknown, orig: string) => orig ?? null),
248
- }));
249
- case ColType.DECIMAL_2:
250
- return s.concat(object().shape({
251
- [col.id]: string().nullable().decimal2().transform((_val: unknown, orig: string) => orig ?? null),
252
- }));
253
- case ColType.DECIMAL_3:
254
- return s.concat(object().shape({
255
- [col.id]: string().nullable().decimal3().transform((_val: unknown, orig: string) => orig ?? null),
256
- }));
257
- case ColType.DECIMAL_4:
258
- return s.concat(object().shape({
259
- [col.id]: string().nullable().decimal4().transform((_val: unknown, orig: string) => orig ?? null),
260
- }));
261
- case ColType.DECIMAL_5:
262
- return s.concat(object().shape({
263
- [col.id]: string().nullable().decimal5().transform((_val: unknown, orig: string) => orig ?? null),
264
- }));
265
- case ColType.DECIMAL_6:
266
- return s.concat(object().shape({
267
- [col.id]: string().nullable().decimal6().transform((_val: unknown, orig: string) => orig ?? null),
268
- }));
269
- case ColType.TIME_DAY:
270
- return s.concat(object().shape({
271
- [col.id]: string().nullable().transform((_val: unknown, orig: Date) => isValid(orig) ? orig.toISOString() : null),
272
- }));
273
- case ColType.TIME_WEEK:
274
- return s.concat(object().shape({
275
- [col.id]: string().nullable().timeWeek().transform((_val: unknown, orig: string) => orig || null),
276
- }));
277
- case ColType.TIME_MONTH:
278
- return s.concat(object().shape({
279
- [col.id]: string().nullable().timeMonth().transform((_val: unknown, orig: string) => orig || null),
280
- }));
281
- case ColType.TIME_QUARTER:
282
- return s.concat(object().shape({
283
- [col.id]: string().nullable().timeQuarter().transform((_val: unknown, orig: string) => orig || null),
284
- }));
285
- case ColType.TIME_YEAR:
286
- return s.concat(object().shape({
287
- [col.id]: string().nullable().timeYear().transform((_val: unknown, orig: string) => orig || null),
288
- }));
289
- case ColType.REGULAR_LANGUAGE:
290
- try {
291
- return s.concat(object().shape({
292
- [col.id]: string().nullable().matches(new RegExp(col.pattern), t('Invalid value for pattern "{{pattern}}"', { pattern: col.pattern })),
293
- })).transform((_val: unknown, orig: string) => orig || null);
294
- } catch (_error) {
295
- return s.concat(object().shape({
296
- [col.id]: string().nullable().max(col.max_length ?? 65535),
297
- })).transform((_val: unknown, orig: string) => orig || null);
298
- }
299
- case ColType.GENETIC_SEQUENCE:
300
- case ColType.GENETIC_DISTANCE:
301
- return s;
302
- default:
303
- console.error(`Unknown column type: ${refCol.col_type}`);
304
- return s;
305
- }
306
- }, object({}));
307
- }
308
-
309
- public static getRowValue(content: { [key: string]: string }, col: Col, completeCaseType: CompleteCaseType, machineReadable = false): CaseTypeRowValue {
310
- const refCol = completeCaseType.ref_cols[col.ref_col_id];
311
- const hasMappedValue = refCol.col_type === ColType.ORGANIZATION || refCol.region_set_id || refCol.concept_set_id;
312
- if (hasMappedValue) {
313
- return CaseUtil.getMappedValue(content[col.id], col, completeCaseType, machineReadable);
314
- }
315
-
316
- const { DATA_MISSING_CHARACTER } = ConfigManager.instance.config.epi;
317
- const dataMissingCharacter = machineReadable ? '' : DATA_MISSING_CHARACTER;
318
-
319
- const rowValue: CaseTypeRowValue = {
320
- raw: content?.[col.id],
321
- isMissing: !content[col.id],
322
- short: content[col.id] ?? dataMissingCharacter,
323
- long: content[col.id] ?? dataMissingCharacter,
324
- full: content[col.id] ?? t('{{dataMissingCharacter}} (missing)', { dataMissingCharacter }),
325
- };
326
- return rowValue;
327
- }
328
-
329
- public static getMissingRowValue(raw: string, machineReadable = true): CaseTypeRowValue {
330
- const { DATA_MISSING_CHARACTER } = ConfigManager.instance.config.epi;
331
- const dataMissingCharacter = machineReadable ? '' : DATA_MISSING_CHARACTER;
332
-
333
- return {
334
- raw,
335
- isMissing: true,
336
- full: t('{{dataMissingCharacter}} (missing)', { dataMissingCharacter }),
337
- long: dataMissingCharacter,
338
- short: dataMissingCharacter,
339
- };
340
- }
341
-
342
- public static getMappedValue(raw: string, col: Col, completeCaseType: CompleteCaseType, machineReadable = false): CaseTypeRowValue {
343
- if (!raw) {
344
- return CaseUtil.getMissingRowValue(raw, machineReadable);
345
- }
346
-
347
- const refCol = completeCaseType.ref_cols[col.ref_col_id];
348
-
349
- if (refCol.col_type === ColType.ORGANIZATION) {
350
- return CaseUtil.getOrganizationMappedValue(raw);
351
- } else if (refCol.region_set_id) {
352
- return CaseUtil.getRegionMappedValue(refCol, raw);
353
- } else if (refCol.concept_set_id) {
354
- return CaseUtil.getConceptMappedValue(raw);
355
- }
356
- return CaseUtil.getMissingRowValue(raw, machineReadable);
357
- }
358
-
359
- private static getOrganizationMappedValue(raw: string): CaseTypeRowValue {
360
- const organization = EpiDataManager.instance.data?.organizationsById?.[raw];
361
- if (!organization) {
362
- return CaseUtil.getMissingRowValue(raw);
363
- }
364
- return {
365
- raw,
366
- isMissing: false,
367
- short: organization.name,
368
- long: organization.name,
369
- full: organization.name,
370
- };
371
- }
372
-
373
- private static getRegionMappedValue(refCol: RefCol, raw: string): CaseTypeRowValue {
374
- const regionSet = EpiDataManager.instance.data.regionSets[refCol.region_set_id];
375
- const region = EpiDataManager.instance.data.regionsById?.[raw];
376
- if (!region) {
377
- return CaseUtil.getMissingRowValue(raw);
378
- }
379
- return {
380
- raw,
381
- isMissing: false,
382
- full: regionSet.region_code_as_label ? region.code : region.name,
383
- long: regionSet.region_code_as_label ? region.code : region.name,
384
- short: regionSet.region_code_as_label ? region.code : region.name,
385
- };
386
- }
387
-
388
- private static getConceptMappedValue(raw: string): CaseTypeRowValue {
389
- const concept = EpiDataManager.instance.data.conceptsById?.[raw];
390
- if (!concept) {
391
- return CaseUtil.getMissingRowValue(raw);
392
- }
393
- return {
394
- raw,
395
- isMissing: false,
396
- full: `${concept.code} (${concept.name})`,
397
- short: concept.code,
398
- long: concept.name,
399
- };
400
- }
401
- }
@@ -1 +0,0 @@
1
- export * from './CaseUtil';
@@ -1,46 +0,0 @@
1
- import intersection from 'lodash/intersection';
2
-
3
- import { ConfigManager } from '../../classes/managers/ConfigManager';
4
- import type {
5
- EpiDashboardLayoutUserConfig,
6
- EpiDashboardLayoutConfig,
7
- EpiDashboardLayout,
8
- } from '../../models/epi';
9
- import { EPI_ZONE } from '../../models/epi';
10
-
11
-
12
- export class DashboardUtil {
13
- public static readonly dashboardLayoutStorageKey = 'GENEPIX-EpiDashboard-Layout-v1.3';
14
-
15
- public static isSingleWidget(userConfig: EpiDashboardLayoutUserConfig, zone: EPI_ZONE): boolean {
16
- const enabledZones = DashboardUtil.getEnabledZones(userConfig);
17
- return enabledZones.length === 1 && enabledZones[0] === zone;
18
- }
19
-
20
- public static getEnabledZones(userConfig: EpiDashboardLayoutUserConfig): EPI_ZONE[] {
21
- return Object.entries(userConfig.zones).filter(([_name, value]) => value).map(([name]) => name) as EPI_ZONE[];
22
- }
23
-
24
- public static getDashboardLayoutConfig(userConfig: EpiDashboardLayoutUserConfig): EpiDashboardLayoutConfig {
25
- const enabledZones = DashboardUtil.getEnabledZones(userConfig);
26
- return ConfigManager.instance.config.epiDashboard.LAYOUTS.find(epiDashboardLayout => epiDashboardLayout.zones.length === enabledZones.length && intersection(enabledZones, epiDashboardLayout.zones).length === enabledZones.length);
27
- }
28
-
29
- public static getDashboardLayout(userConfig: EpiDashboardLayoutUserConfig): EpiDashboardLayout {
30
- const layoutConfig = DashboardUtil.getDashboardLayoutConfig(userConfig);
31
-
32
- return layoutConfig?.layouts?.[userConfig.arrangement] ?? layoutConfig?.layouts?.[0];
33
- }
34
-
35
- public static createDashboardLayoutUserConfigInitialState(): EpiDashboardLayoutUserConfig {
36
- return {
37
- arrangement: 0,
38
- zones: {
39
- [EPI_ZONE.EPI_CURVE]: true,
40
- [EPI_ZONE.LINE_LIST]: true,
41
- [EPI_ZONE.MAP]: true,
42
- [EPI_ZONE.TREE]: true,
43
- },
44
- };
45
- }
46
- }
@@ -1 +0,0 @@
1
- export * from './DashboardUtil';
@@ -1,137 +0,0 @@
1
- import type { UseQueryResult } from '@tanstack/react-query';
2
-
3
- import type {
4
- Loadable,
5
- UseMap,
6
- UseOptions,
7
- UseNameFactory,
8
- } from '../../models/dataHooks';
9
- import { StringUtil } from '../StringUtil';
10
-
11
- export class DataHookUtil {
12
- private static isResponse<TValue>(response: unknown): response is UseQueryResult<TValue> {
13
- if (!response) {
14
- return false;
15
- }
16
- if (typeof response !== 'object') {
17
- return false;
18
- }
19
- if (!('isLoading' in response)) {
20
- return false;
21
- }
22
- return true;
23
- }
24
-
25
- public static createUseMapDataHook<TValue>(
26
- response: UseQueryResult<TValue[]> | TValue[],
27
- getId: (item: TValue) => string,
28
- loadables: Loadable[] = [],
29
- ): UseMap<TValue> {
30
- if (DataHookUtil.isResponse(response) && response.error) {
31
- return {
32
- isLoading: false,
33
- error: response.error,
34
- map: new Map(),
35
- };
36
- }
37
- if (loadables?.some(obj => obj.error)) {
38
- return {
39
- isLoading: false,
40
- error: loadables.find(obj => obj.error).error,
41
- map: new Map(),
42
- };
43
- }
44
-
45
- const isLoadings = [DataHookUtil.isResponse(response) ? (response.isLoading || response.isPending || response.isFetching) : false];
46
- if (loadables) {
47
- isLoadings.push(...loadables.map(obj => obj.isLoading));
48
- }
49
- const isLoading = isLoadings.some(x => x);
50
- let map: Map<string, TValue> = new Map();
51
- if (!isLoading) {
52
- const items = DataHookUtil.isResponse(response) ? response.data : response;
53
- map = new Map(items?.map(item => [getId(item), item]));
54
- }
55
-
56
- return {
57
- isLoading,
58
- map,
59
- error: null,
60
- };
61
- }
62
-
63
- public static createUseOptionsDataHook<TValue>(
64
- response: UseQueryResult<TValue[]> | TValue[],
65
- getId: (item: TValue) => string,
66
- createLabel: (item: TValue) => string,
67
- loadables?: Loadable[],
68
- sortComperator?: (a: string, b: string) => number,
69
- ): UseOptions<string> {
70
- if (DataHookUtil.isResponse(response) && response.error) {
71
- return {
72
- isLoading: false,
73
- error: response.error,
74
- options: [],
75
- };
76
- }
77
- if (loadables?.some(obj => obj.error)) {
78
- return {
79
- isLoading: false,
80
- error: loadables.find(obj => obj.error).error,
81
- options: [],
82
- };
83
- }
84
-
85
- const isLoading = [
86
- DataHookUtil.isResponse(response) ? (response.isLoading || response.isPending) : false,
87
- ...loadables?.map(obj => obj.isLoading) ?? [],
88
- ].some(Boolean);
89
- const sort = sortComperator ?? StringUtil.sortComperator;
90
-
91
- let options: {
92
- value: string;
93
- label: string;
94
- }[] = [];
95
- if (!isLoading) {
96
- const items = DataHookUtil.isResponse(response) ? response.data : response;
97
- options = items?.map(item => ({ value: getId(item), label: createLabel(item) })).sort((a, b) => {
98
- return sort(a.label, b.label);
99
- }) ?? [];
100
- }
101
-
102
- return {
103
- isLoading,
104
- options,
105
- error: null,
106
- };
107
- }
108
-
109
- public static createUseNameFactoryHook<TValue>(
110
- getName: (item: TValue) => string,
111
- loadables?: Loadable[],
112
- ): UseNameFactory<TValue> {
113
- if (loadables?.some(obj => obj.error)) {
114
- return {
115
- isLoading: false,
116
- error: loadables.find(obj => obj.error).error,
117
- getName,
118
- };
119
- }
120
-
121
- const isLoading = loadables ? loadables.some(obj => obj.isLoading) : false;
122
- if (isLoading) {
123
- return {
124
- isLoading,
125
- error: null,
126
- getName: () => '',
127
- };
128
- }
129
-
130
- return {
131
- isLoading,
132
- error: null,
133
- getName,
134
- };
135
-
136
- }
137
- }
@@ -1 +0,0 @@
1
- export * from './DataHookUtil';
@@ -1,70 +0,0 @@
1
- import intersection from 'lodash/intersection';
2
-
3
- export class DataSetUtil {
4
- public static getMappedSetMembers<T>(kwArgs: { items: T[]; setProperty: keyof T & string; memberProperty: keyof T & string }): Map<string, string[]> {
5
- const { items, setProperty, memberProperty } = kwArgs;
6
- const mappedSets = new Map<string, string[]>();
7
- items.forEach(member => {
8
- if (!mappedSets.has(member[setProperty] as string)) {
9
- mappedSets.set(member[setProperty] as string, []);
10
- }
11
- mappedSets.get(member[setProperty] as string)?.push(member[memberProperty] as string);
12
- });
13
- return mappedSets;
14
- }
15
-
16
- public static getCategorizedSetMembers(kwArgs: { mappedSetMembers: Map<string, string[]>; parentSetId: string; parentMemberIds: string[]; childMemberIds: string[] }): { setIds: string[]; categorizedMemberIds: string[]; uncategorizedMemberIds: string[] } {
17
- const { mappedSetMembers, parentSetId, parentMemberIds, childMemberIds } = kwArgs;
18
- const intersectedMemberIds = intersection(parentMemberIds, childMemberIds);
19
- let uncategorizedMemberIds: string[] = [];
20
- const categorizedMemberIds: string[] = [];
21
-
22
- const setIds: string[] = [];
23
- if (intersectedMemberIds.length) {
24
- if (intersectedMemberIds.length === parentMemberIds.length && intersectedMemberIds.length === childMemberIds.length) {
25
- // all members are in the parent set and child set, so we can use the parent set id (optimization)
26
- setIds.push(parentSetId);
27
- categorizedMemberIds.push(...intersectedMemberIds);
28
- } else {
29
- mappedSetMembers.forEach((memberIds, setId) => {
30
- const setIntersectedMemberIds = intersection(memberIds, intersectedMemberIds);
31
- if (setIntersectedMemberIds.length === memberIds.length) {
32
- setIds.push(setId);
33
- categorizedMemberIds.push(...setIntersectedMemberIds);
34
- }
35
- });
36
- uncategorizedMemberIds = intersectedMemberIds.filter(id => !categorizedMemberIds.includes(id));
37
- }
38
- }
39
-
40
- // sanitize setIds (remove duplicates, larger sets containing smaller sets)
41
- const sanitizedSetIds: string[] = [];
42
- if (setIds.length <= 1) {
43
- sanitizedSetIds.push(...setIds);
44
- } else {
45
- const sortedSetsIdsBySize = Array.from(mappedSetMembers.entries()).filter(([setId]) => setIds.includes(setId)).sort((a, b) => b[1].length - a[1].length).map(x => x[0]);
46
- setIds.forEach(setId => {
47
- const setIdIndex = sortedSetsIdsBySize.indexOf(setId);
48
- for (let i = 0; i < setIdIndex; i++) {
49
- const otherSetId = sortedSetsIdsBySize[i];
50
- if (mappedSetMembers.get(otherSetId)?.length && mappedSetMembers.get(setId)?.length) {
51
- const otherSetMemberIds = mappedSetMembers.get(otherSetId) || [];
52
- const setMemberIds = mappedSetMembers.get(setId) || [];
53
- if (intersection(otherSetMemberIds, setMemberIds).length === setMemberIds.length) {
54
- // other set contains current set, do not add current set
55
- return;
56
- }
57
- }
58
- }
59
- sanitizedSetIds.push(setId);
60
- });
61
- }
62
-
63
- return {
64
- setIds: sanitizedSetIds,
65
- uncategorizedMemberIds,
66
- categorizedMemberIds,
67
- };
68
-
69
- }
70
- }
@@ -1 +0,0 @@
1
- export * from './DataSetUtil';