@gen-epix/ui 1.15.0 → 1.15.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/environment.d.ts +54 -0
- package/dist/index.d.ts +16078 -0
- package/dist/index.js.map +1 -0
- package/package.json +13 -16
- package/src/@types/environment.d.ts +0 -54
- package/src/api/api.ts +0 -43576
- package/src/api/base.ts +0 -111
- package/src/api/common.ts +0 -168
- package/src/api/configuration.ts +0 -118
- package/src/api/index.ts +0 -20
- package/src/assets/icons/CollectionIcon.svg +0 -1
- package/src/assets/icons/DnaIcon.svg +0 -1
- package/src/assets/icons/VirusIcon.svg +0 -1
- package/src/assets/logo/logo-rijksoverheid.svg +0 -42
- package/src/assets/logo/logo-rivm.svg +0 -6
- package/src/classes/Subject/Subject.ts +0 -26
- package/src/classes/Subject/index.ts +0 -1
- package/src/classes/TableEventBus/TableEventBus.ts +0 -14
- package/src/classes/TableEventBus/index.ts +0 -1
- package/src/classes/abstracts/EventBusAbstract/EventBusAbstract.ts +0 -37
- package/src/classes/abstracts/EventBusAbstract/index.ts +0 -1
- package/src/classes/abstracts/FilterAbstract/FilterAbstract.ts +0 -54
- package/src/classes/abstracts/FilterAbstract/index.ts +0 -1
- package/src/classes/abstracts/SubscribableAbstract/SubscribableAbstract.ts +0 -20
- package/src/classes/abstracts/SubscribableAbstract/index.ts +0 -1
- package/src/classes/errors/UploadError.ts +0 -11
- package/src/classes/errors/index.ts +0 -1
- package/src/classes/filters/BooleanFilter.ts +0 -31
- package/src/classes/filters/DateFilter.ts +0 -133
- package/src/classes/filters/GeoFilter.ts +0 -60
- package/src/classes/filters/MultiSelectFilter.ts +0 -70
- package/src/classes/filters/NumberRangeFilter.ts +0 -82
- package/src/classes/filters/SelectionFilter.ts +0 -25
- package/src/classes/filters/TextFilter.ts +0 -36
- package/src/classes/filters/TreeFilter.ts +0 -22
- package/src/classes/managers/AuthenticationManager/AuthenticationManager.ts +0 -94
- package/src/classes/managers/AuthenticationManager/index.ts +0 -1
- package/src/classes/managers/AuthorizationManager/AuthorizationManager.ts +0 -70
- package/src/classes/managers/AuthorizationManager/index.ts +0 -1
- package/src/classes/managers/BackendVersionManager/BackendVersionManager.ts +0 -23
- package/src/classes/managers/BackendVersionManager/index.ts +0 -1
- package/src/classes/managers/BreadcrumbManager/BreadcrumbManager.ts +0 -30
- package/src/classes/managers/BreadcrumbManager/index.ts +0 -1
- package/src/classes/managers/ConfigManager/ConfigManager.ts +0 -31
- package/src/classes/managers/ConfigManager/index.ts +0 -1
- package/src/classes/managers/DevicePixelRatioManager/DevicePixelRatioManager.ts +0 -27
- package/src/classes/managers/DevicePixelRatioManager/index.ts +0 -1
- package/src/classes/managers/EmotionCacheManager/EmotionCacheManager.ts +0 -27
- package/src/classes/managers/EmotionCacheManager/index.ts +0 -1
- package/src/classes/managers/EpiDataManager/EpiDataManager.ts +0 -196
- package/src/classes/managers/EpiDataManager/index.ts +0 -1
- package/src/classes/managers/EpiEventBusManager/EpiEventBusManager.ts +0 -61
- package/src/classes/managers/EpiEventBusManager/index.ts +0 -1
- package/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.ts +0 -32
- package/src/classes/managers/EpiHighlightingManager/index.ts +0 -1
- package/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.ts +0 -118
- package/src/classes/managers/EpiLineListCaseSetMembersManager/index.ts +0 -1
- package/src/classes/managers/FeatureFlagsManager/FeatureFlagsManager.ts +0 -30
- package/src/classes/managers/FeatureFlagsManager/index.ts +0 -1
- package/src/classes/managers/I18nManager/I18nManager.ts +0 -105
- package/src/classes/managers/I18nManager/index.ts +0 -1
- package/src/classes/managers/InactivityManager/InactivityManager.ts +0 -119
- package/src/classes/managers/InactivityManager/index.ts +0 -1
- package/src/classes/managers/KeyboardShortcutManager/KeyboardShortcutManager.ts +0 -78
- package/src/classes/managers/KeyboardShortcutManager/index.ts +0 -1
- package/src/classes/managers/LogManager/LogManager.ts +0 -151
- package/src/classes/managers/LogManager/index.ts +0 -1
- package/src/classes/managers/NavigationHistoryManager/NavigationHistoryManager.ts +0 -16
- package/src/classes/managers/NavigationHistoryManager/index.ts +0 -1
- package/src/classes/managers/NotificationManager/NotificationManager.ts +0 -104
- package/src/classes/managers/NotificationManager/index.ts +0 -1
- package/src/classes/managers/PageEventBusManager/PageEventBusManager.ts +0 -116
- package/src/classes/managers/PageEventBusManager/index.ts +0 -1
- package/src/classes/managers/QueryClientManager/QueryClientManager.ts +0 -51
- package/src/classes/managers/QueryClientManager/index.ts +0 -1
- package/src/classes/managers/RouterManager/RouterManager.ts +0 -25
- package/src/classes/managers/RouterManager/index.ts +0 -1
- package/src/classes/managers/UserSettingsManager/UserSettingsManager.ts +0 -16
- package/src/classes/managers/UserSettingsManager/index.ts +0 -1
- package/src/classes/managers/WindowManager/WindowManager.test.ts +0 -23
- package/src/classes/managers/WindowManager/WindowManager.ts +0 -26
- package/src/classes/managers/WindowManager/index.ts +0 -1
- package/src/components/app/App/App.tsx +0 -58
- package/src/components/app/App/index.ts +0 -1
- package/src/components/app/ApplicationBootstrap/ApplicationBootstrap.tsx +0 -223
- package/src/components/app/ApplicationBootstrap/index.ts +0 -1
- package/src/components/app/RouterRoot/RouterRoot.tsx +0 -187
- package/src/components/app/RouterRoot/index.ts +0 -1
- package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.tsx +0 -347
- package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.tsx +0 -38
- package/src/components/epi/EpiAddCasesToEventDialog/index.ts +0 -1
- package/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.tsx +0 -61
- package/src/components/epi/EpiBulkEditCaseDialog/index.ts +0 -1
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.tsx +0 -137
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.tsx +0 -127
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.tsx +0 -111
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.tsx +0 -377
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.tsx +0 -140
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.tsx +0 -23
- package/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.tsx +0 -89
- package/src/components/epi/EpiCaseInfoDialog/index.ts +0 -1
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.tsx +0 -108
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.tsx +0 -34
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.tsx +0 -151
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.tsx +0 -389
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.tsx +0 -155
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.tsx +0 -23
- package/src/components/epi/EpiCaseSetInfoDialog/index.ts +0 -1
- package/src/components/epi/EpiCaseSummary/EpiCaseSummary.tsx +0 -141
- package/src/components/epi/EpiCaseSummary/index.ts +0 -1
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.tsx +0 -91
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.tsx +0 -118
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.tsx +0 -38
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.tsx +0 -39
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.tsx +0 -169
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.tsx +0 -42
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.tsx +0 -87
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.tsx +0 -73
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.tsx +0 -61
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.tsx +0 -151
- package/src/components/epi/EpiCaseTypeInfoDialog/index.ts +0 -10
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.tsx +0 -190
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.tsx +0 -62
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.ts +0 -1
- package/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.tsx +0 -87
- package/src/components/epi/EpiCompletCaseTypeLoader/index.ts +0 -1
- package/src/components/epi/EpiContactDetailsDialog/EpiContactDetailsDialog.tsx +0 -151
- package/src/components/epi/EpiContactDetailsDialog/index.ts +0 -1
- package/src/components/epi/EpiContextMenu/EpiContextMenu.tsx +0 -155
- package/src/components/epi/EpiContextMenu/index.ts +0 -1
- package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.tsx +0 -386
- package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.tsx +0 -30
- package/src/components/epi/EpiCreateEventDialog/index.ts +0 -1
- package/src/components/epi/EpiCurve/EpiCurve.tsx +0 -525
- package/src/components/epi/EpiCurve/index.ts +0 -1
- package/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.tsx +0 -27
- package/src/components/epi/EpiCustomTabPanel/index.ts +0 -1
- package/src/components/epi/EpiDashboard/EpiDashboard.tsx +0 -390
- package/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.tsx +0 -154
- package/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.tsx +0 -89
- package/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.tsx +0 -248
- package/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.tsx +0 -160
- package/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.tsx +0 -93
- package/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.tsx +0 -90
- package/src/components/epi/EpiDashboard/index.ts +0 -1
- package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.tsx +0 -34
- package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.tsx +0 -73
- package/src/components/epi/EpiDashboardStoreLoader/index.ts +0 -2
- package/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.tsx +0 -19
- package/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.tsx +0 -88
- package/src/components/epi/EpiDataCollectionAccessInfo/index.ts +0 -1
- package/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.tsx +0 -302
- package/src/components/epi/EpiFindSimilarCasesDialog/index.ts +0 -1
- package/src/components/epi/EpiLegendaItem/EpiLegendaItem.tsx +0 -106
- package/src/components/epi/EpiLegendaItem/index.ts +0 -1
- package/src/components/epi/EpiLineList/EpiLineList.tsx +0 -492
- package/src/components/epi/EpiLineList/EpiLineListPrimaryMenu.tsx +0 -189
- package/src/components/epi/EpiLineList/EpiLineListSecondaryMenu.tsx +0 -56
- package/src/components/epi/EpiLineList/EpiLineListTitle.tsx +0 -28
- package/src/components/epi/EpiLineList/index.ts +0 -1
- package/src/components/epi/EpiLineList/useEpiLineListEmitDownloadOptions.tsx +0 -102
- package/src/components/epi/EpiMap/EpiMap.tsx +0 -547
- package/src/components/epi/EpiMap/index.ts +0 -1
- package/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.tsx +0 -169
- package/src/components/epi/EpiRemoveCasesFromEventDialog/index.ts +0 -1
- package/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.tsx +0 -216
- package/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.tsx +0 -151
- package/src/components/epi/EpiSequenceDownloadDialog/index.ts +0 -1
- package/src/components/epi/EpiStratification/EpiStratification.tsx +0 -241
- package/src/components/epi/EpiStratification/index.ts +0 -1
- package/src/components/epi/EpiTree/EpiTree.tsx +0 -906
- package/src/components/epi/EpiTree/index.ts +0 -1
- package/src/components/epi/EpiTreeDescription/EpiTreeDescription.tsx +0 -71
- package/src/components/epi/EpiTreeDescription/index.ts +0 -1
- package/src/components/epi/EpiUpload/EpiUpload.tsx +0 -107
- package/src/components/epi/EpiUpload/EpiUploadCaseResultTable.tsx +0 -383
- package/src/components/epi/EpiUpload/EpiUploadCreateCases.tsx +0 -266
- package/src/components/epi/EpiUpload/EpiUploadMapColumns.tsx +0 -261
- package/src/components/epi/EpiUpload/EpiUploadMapSequences.tsx +0 -332
- package/src/components/epi/EpiUpload/EpiUploadNavigation.tsx +0 -52
- package/src/components/epi/EpiUpload/EpiUploadSelectFile.tsx +0 -285
- package/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.tsx +0 -375
- package/src/components/epi/EpiUpload/EpiUploadValidate.tsx +0 -199
- package/src/components/epi/EpiUpload/EpiUploadValidateNavigation.tsx +0 -34
- package/src/components/epi/EpiUpload/index.ts +0 -1
- package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.tsx +0 -101
- package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.tsx +0 -160
- package/src/components/epi/EpiUserRightsDialog/index.ts +0 -1
- package/src/components/epi/EpiWarning/EpiWarning.tsx +0 -39
- package/src/components/epi/EpiWarning/index.ts +0 -1
- package/src/components/epi/EpiWidget/EpiWidget.tsx +0 -255
- package/src/components/epi/EpiWidget/index.ts +0 -1
- package/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.tsx +0 -40
- package/src/components/epi/EpiWidgetHeaderIconButton/index.ts +0 -1
- package/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.tsx +0 -56
- package/src/components/epi/EpiWidgetMenu/index.ts +0 -1
- package/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.tsx +0 -51
- package/src/components/epi/EpiWidgetUnavailable/index.ts +0 -1
- package/src/components/filters/BooleanFilterField/BooleanFilterField.tsx +0 -26
- package/src/components/filters/BooleanFilterField/index.ts +0 -1
- package/src/components/filters/DateFilterField/DateFilterField.tsx +0 -23
- package/src/components/filters/DateFilterField/index.ts +0 -1
- package/src/components/filters/GeoFilterField/GeoFilterField.tsx +0 -32
- package/src/components/filters/GeoFilterField/index.ts +0 -1
- package/src/components/filters/MultiSelectFilterField/MultiSelectFilterField.tsx +0 -31
- package/src/components/filters/MultiSelectFilterField/index.ts +0 -1
- package/src/components/filters/NumberRangeFilterField/NumberRangeFilterField.tsx +0 -20
- package/src/components/filters/NumberRangeFilterField/index.ts +0 -1
- package/src/components/filters/TextFilterField/TextFilterField.tsx +0 -18
- package/src/components/filters/TextFilterField/index.ts +0 -1
- package/src/components/form/fields/Autocomplete/Autocomplete.tsx +0 -270
- package/src/components/form/fields/Autocomplete/index.ts +0 -1
- package/src/components/form/fields/CheckboxGroup/CheckboxGroup.tsx +0 -192
- package/src/components/form/fields/CheckboxGroup/index.ts +0 -1
- package/src/components/form/fields/DatePicker/DatePicker.tsx +0 -167
- package/src/components/form/fields/DatePicker/index.ts +0 -1
- package/src/components/form/fields/DateRangePicker/DateRangePicker.tsx +0 -359
- package/src/components/form/fields/DateRangePicker/index.ts +0 -1
- package/src/components/form/fields/NumberField/NumberField.tsx +0 -277
- package/src/components/form/fields/NumberField/index.ts +0 -1
- package/src/components/form/fields/NumberRangeInput/NumberRangeInput.tsx +0 -297
- package/src/components/form/fields/NumberRangeInput/index.ts +0 -1
- package/src/components/form/fields/RadioGroup/RadioGroup.tsx +0 -130
- package/src/components/form/fields/RadioGroup/index.ts +0 -1
- package/src/components/form/fields/RichTextEditor/RichTextEditor.tsx +0 -321
- package/src/components/form/fields/RichTextEditor/RichTextEditorContent.tsx +0 -34
- package/src/components/form/fields/RichTextEditor/index.ts +0 -2
- package/src/components/form/fields/RichTextEditor/useRichTextEditorExtensions.ts +0 -174
- package/src/components/form/fields/Select/Select.tsx +0 -219
- package/src/components/form/fields/Select/index.ts +0 -1
- package/src/components/form/fields/Switch/Switch.tsx +0 -116
- package/src/components/form/fields/Switch/index.ts +0 -1
- package/src/components/form/fields/TextField/TextField.tsx +0 -170
- package/src/components/form/fields/TextField/index.ts +0 -1
- package/src/components/form/fields/ToggleButtonGroup/ToggleButtonGroup.tsx +0 -118
- package/src/components/form/fields/ToggleButtonGroup/index.ts +0 -1
- package/src/components/form/fields/TransferList/TransferList.tsx +0 -360
- package/src/components/form/fields/TransferList/index.ts +0 -1
- package/src/components/form/fields/UploadButton/UploadButton.tsx +0 -157
- package/src/components/form/helpers/FormFieldHelperText/FormFieldHelperText.tsx +0 -68
- package/src/components/form/helpers/FormFieldHelperText/index.ts +0 -1
- package/src/components/form/helpers/FormFieldLoadingIndicator/FormFieldLoadingIndicator.tsx +0 -22
- package/src/components/form/helpers/FormFieldLoadingIndicator/index.ts +0 -1
- package/src/components/form/helpers/GenericForm/GenericForm.tsx +0 -187
- package/src/components/form/helpers/GenericForm/index.ts +0 -1
- package/src/components/ui/ApplicationBar/ApplicationBar.tsx +0 -74
- package/src/components/ui/ApplicationBar/ApplicationBarActions.tsx +0 -124
- package/src/components/ui/ApplicationBar/ApplicationBarActionsFeedbackItem.tsx +0 -102
- package/src/components/ui/ApplicationBar/ApplicationBarActionsInfotem.tsx +0 -60
- package/src/components/ui/ApplicationBar/ApplicationBarActionsNotificationsItem.tsx +0 -82
- package/src/components/ui/ApplicationBar/ApplicationBarActionsOrganizationSwitcherItem.tsx +0 -58
- package/src/components/ui/ApplicationBar/ApplicationBarActionsOutagesItem.tsx +0 -75
- package/src/components/ui/ApplicationBar/ApplicationBarActionsUserItem.tsx +0 -60
- package/src/components/ui/ApplicationBar/ApplicationBarNavigationMenu.tsx +0 -159
- package/src/components/ui/ApplicationBar/InfoMenu.tsx +0 -120
- package/src/components/ui/ApplicationBar/UserMenu.tsx +0 -208
- package/src/components/ui/ApplicationBar/UserOrganizationAdminMenuItem.tsx +0 -69
- package/src/components/ui/ApplicationBar/UserOwnOrganizationMenuItem.tsx +0 -54
- package/src/components/ui/ApplicationBar/index.ts +0 -1
- package/src/components/ui/ApplicationFooter/ApplicationFooter.tsx +0 -121
- package/src/components/ui/ApplicationFooter/ApplicationFooterLink.tsx +0 -48
- package/src/components/ui/ApplicationFooter/ApplicationFooterLinkSection.tsx +0 -56
- package/src/components/ui/ApplicationFooter/index.ts +0 -1
- package/src/components/ui/AuthenticationWrapper/AuthenticationWrapper.tsx +0 -208
- package/src/components/ui/AuthenticationWrapper/index.ts +0 -1
- package/src/components/ui/AuthorizationWrapper/AuthorizationWrapper.tsx +0 -75
- package/src/components/ui/AuthorizationWrapper/index.ts +0 -1
- package/src/components/ui/Breadcrumbs/Breadcrumbs.tsx +0 -92
- package/src/components/ui/Breadcrumbs/index.ts +0 -1
- package/src/components/ui/Confirmation/Confirmation.tsx +0 -10
- package/src/components/ui/Confirmation/ConfirmationRender.tsx +0 -81
- package/src/components/ui/Confirmation/index.ts +0 -2
- package/src/components/ui/ConsentDialog/ConsentDialog.tsx +0 -57
- package/src/components/ui/ConsentDialog/index.ts +0 -1
- package/src/components/ui/CopyToClipboardButton/CopyToClipboardButton.tsx +0 -94
- package/src/components/ui/CopyToClipboardButton/index.ts +0 -1
- package/src/components/ui/Dialog/Dialog.tsx +0 -196
- package/src/components/ui/Dialog/index.ts +0 -1
- package/src/components/ui/FileSelector/FileSelector.tsx +0 -358
- package/src/components/ui/FileSelector/index.ts +0 -1
- package/src/components/ui/GenericErrorMessage/GenericErrorMessage.tsx +0 -168
- package/src/components/ui/GenericErrorMessage/index.ts +0 -1
- package/src/components/ui/HomePageTrends/HomePageTrendCard.tsx +0 -132
- package/src/components/ui/HomePageTrends/HomePageTrends.tsx +0 -312
- package/src/components/ui/HomePageTrends/index.ts +0 -1
- package/src/components/ui/LicensesDialog/LicensesDialog.tsx +0 -231
- package/src/components/ui/LicensesDialog/index.ts +0 -1
- package/src/components/ui/LinearProgressWithLabel/LinearProgressWithLabel.tsx +0 -31
- package/src/components/ui/LinearProgressWithLabel/index.ts +0 -1
- package/src/components/ui/LoadingIndicator/LoadingIndicator.tsx +0 -11
- package/src/components/ui/LoadingIndicator/index.ts +0 -1
- package/src/components/ui/MyPermissionsDialog/MyPermissionsDialog.tsx +0 -95
- package/src/components/ui/MyPermissionsDialog/index.ts +0 -1
- package/src/components/ui/NavLink/NavLink.tsx +0 -47
- package/src/components/ui/NavLink/index.ts +0 -1
- package/src/components/ui/NestedMenu/IconMenuItem.tsx +0 -64
- package/src/components/ui/NestedMenu/NestedDropdown.tsx +0 -133
- package/src/components/ui/NestedMenu/NestedMenuItem.tsx +0 -250
- package/src/components/ui/NestedMenu/index.ts +0 -4
- package/src/components/ui/NestedMenu/nestedMenuItemsFromObject.tsx +0 -98
- package/src/components/ui/Notifications/NotificationItem.tsx +0 -70
- package/src/components/ui/Notifications/NotificationsDrawer.tsx +0 -161
- package/src/components/ui/Notifications/NotificationsStack.tsx +0 -45
- package/src/components/ui/Notifications/index.ts +0 -2
- package/src/components/ui/OrganizationSwitcherDialog/OrganizationSwitcherDialog.tsx +0 -204
- package/src/components/ui/OrganizationSwitcherDialog/index.ts +0 -1
- package/src/components/ui/OutageList/OutageItem.tsx +0 -48
- package/src/components/ui/OutageList/OutageList.tsx +0 -54
- package/src/components/ui/OutageList/OutageSection.tsx +0 -39
- package/src/components/ui/OutageList/index.ts +0 -1
- package/src/components/ui/OutagesDialog/OutagesDialog.tsx +0 -71
- package/src/components/ui/OutagesDialog/index.ts +0 -1
- package/src/components/ui/PageContainer/PageContainer.tsx +0 -207
- package/src/components/ui/PageContainer/index.ts +0 -1
- package/src/components/ui/PanelSeparator/PanelResizeHandle.tsx +0 -67
- package/src/components/ui/PanelSeparator/index.ts +0 -1
- package/src/components/ui/ResponseHandler/ResponseHandler.tsx +0 -79
- package/src/components/ui/ResponseHandler/index.ts +0 -1
- package/src/components/ui/Sidebar/SidebarItem.tsx +0 -138
- package/src/components/ui/Sidebar/SidebarMenu.tsx +0 -33
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- package/src/utils/AbacUtil/index.ts +0 -1
- package/src/utils/AxiosUtil/AxiosUtil.test.ts +0 -66
- package/src/utils/AxiosUtil/AxiosUtil.ts +0 -47
- package/src/utils/AxiosUtil/index.ts +0 -1
- package/src/utils/CaseSelectionUtil/CaseSelectionUtil.ts +0 -32
- package/src/utils/CaseSelectionUtil/index.ts +0 -1
- package/src/utils/CaseSetUtil/CaseSetUtil.ts +0 -13
- package/src/utils/CaseSetUtil/index.ts +0 -1
- package/src/utils/CaseTypeUtil/CaseTypeUtil.ts +0 -178
- package/src/utils/CaseTypeUtil/index.ts +0 -1
- package/src/utils/CaseUtil/CaseUtil.ts +0 -401
- package/src/utils/CaseUtil/index.ts +0 -1
- package/src/utils/DashboardUtil/DashboardUtil.ts +0 -46
- package/src/utils/DashboardUtil/index.ts +0 -1
- package/src/utils/DataHookUtil/DataHookUtil.ts +0 -137
- package/src/utils/DataHookUtil/index.ts +0 -1
- package/src/utils/DataSetUtil/DataSetUtil.ts +0 -70
- package/src/utils/DataSetUtil/index.ts +0 -1
- package/src/utils/DataUtil/DataUtil.ts +0 -84
- package/src/utils/DataUtil/index.ts +0 -1
- package/src/utils/DownloadUtil/DownloadUtil.ts +0 -237
- package/src/utils/DownloadUtil/index.ts +0 -1
- package/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.ts +0 -142
- package/src/utils/EffectiveRightsUtil/index.ts +0 -1
- package/src/utils/EpiCurveUtil/EpiCurveUtil.ts +0 -180
- package/src/utils/EpiCurveUtil/index.ts +0 -1
- package/src/utils/EpiFilterUtil/EpiFilterUtil.ts +0 -232
- package/src/utils/EpiFilterUtil/index.ts +0 -1
- package/src/utils/EpiLineListUtil/EpiLineListUtil.ts +0 -15
- package/src/utils/EpiLineListUtil/index.ts +0 -1
- package/src/utils/EpiMapUtil/EpiMapUtil.test.ts +0 -54
- package/src/utils/EpiMapUtil/EpiMapUtil.ts +0 -80
- package/src/utils/EpiMapUtil/index.ts +0 -1
- package/src/utils/EpiTreeUtil/EpiTreeUtil.test.ts +0 -2467
- package/src/utils/EpiTreeUtil/EpiTreeUtil.ts +0 -1055
- package/src/utils/EpiTreeUtil/index.ts +0 -1
- package/src/utils/EpiUploadUtil/EpiUploadUtil.ts +0 -857
- package/src/utils/EpiUploadUtil/index.ts +0 -1
- package/src/utils/FileUtil/FileUtil.ts +0 -22
- package/src/utils/FileUtil/index.ts +0 -1
- package/src/utils/FormUtil/FormUtil.test.ts +0 -36
- package/src/utils/FormUtil/FormUtil.ts +0 -63
- package/src/utils/FormUtil/index.ts +0 -1
- package/src/utils/MenuDataUtil/MenuDataUtil.ts +0 -54
- package/src/utils/MenuDataUtil/index.ts +0 -1
- package/src/utils/NewickUtil/NewickUtil.test.ts +0 -187
- package/src/utils/NewickUtil/NewickUtil.ts +0 -69
- package/src/utils/NewickUtil/index.ts +0 -1
- package/src/utils/NotificationUtil/NotificationUtil.ts +0 -28
- package/src/utils/NotificationUtil/index.ts +0 -1
- package/src/utils/NumberUtil/NumberUtil.test.ts +0 -113
- package/src/utils/NumberUtil/NumberUtil.ts +0 -67
- package/src/utils/NumberUtil/index.ts +0 -1
- package/src/utils/ObjectUtil/ObjectUtil.test.ts +0 -43
- package/src/utils/ObjectUtil/ObjectUtil.ts +0 -28
- package/src/utils/ObjectUtil/index.ts +0 -1
- package/src/utils/OutageUtil/OutageUtil.test.ts +0 -108
- package/src/utils/OutageUtil/OutageUtil.ts +0 -81
- package/src/utils/OutageUtil/index.ts +0 -1
- package/src/utils/QueryUtil/QueryUtil.test.ts +0 -42
- package/src/utils/QueryUtil/QueryUtil.ts +0 -105
- package/src/utils/QueryUtil/index.ts +0 -1
- package/src/utils/StringUtil/StringUtil.test.ts +0 -61
- package/src/utils/StringUtil/StringUtil.ts +0 -91
- package/src/utils/StringUtil/index.ts +0 -1
- package/src/utils/TableUtil/TableUtil.ts +0 -665
- package/src/utils/TableUtil/index.ts +0 -1
- package/src/utils/TestIdUtil/TestIdUtil.test.ts +0 -12
- package/src/utils/TestIdUtil/TestIdUtil.ts +0 -13
- package/src/utils/TestIdUtil/index.ts +0 -1
- package/src/utils/TimeUtil/TimeUtil.ts +0 -38
- package/src/utils/TimeUtil/index.ts +0 -1
- package/src/utils/UserManagerUtil/UserManagerUtil.test.ts +0 -41
- package/src/utils/UserManagerUtil/UserManagerUtil.ts +0 -39
- package/src/utils/UserManagerUtil/index.ts +0 -1
- package/src/utils/ValidationUtil/ValidationUtil.test.ts +0 -61
- package/src/utils/ValidationUtil/ValidationUtil.ts +0 -56
- package/src/utils/ValidationUtil/index.ts +0 -1
- /package/{src → dist}/locale/en.json +0 -0
- /package/{src → dist}/locale/nl.json +0 -0
- /package/{src/@types → dist}/mui.d.ts +0 -0
- /package/{src/@types → dist}/ui.d.ts +0 -0
- /package/{src/@types → dist}/vite-env.d.ts +0 -0
- /package/{src/@types → dist}/yup.d.ts +0 -0
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import { createStore } from 'zustand';
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import { produce } from 'immer';
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import { t } from 'i18next';
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import difference from 'lodash/difference';
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import uniq from 'lodash/uniq';
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import last from 'lodash/last';
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import { persist } from 'zustand/middleware';
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import type {
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CreateTableStoreKwArgs,
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CreateTableStoreInitialStateKwArgs,
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TableStoreActions,
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TableStoreState,
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} from '../tableStore';
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import {
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createTableStoreInitialState,
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createTableStoreActions,
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createTableStorePersistConfiguration,
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} from '../tableStore';
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import type {
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Col,
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Case,
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CompleteCaseType,
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PhylogeneticTree,
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TypedCompositeFilter,
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CaseQuery,
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CaseQueryResult,
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} from '../../api';
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import {
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ColType,
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CaseApi,
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} from '../../api';
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import { FILTER_MODE } from '../../classes/abstracts/FilterAbstract';
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import { SelectionFilter } from '../../classes/filters/SelectionFilter';
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import { TreeFilter } from '../../classes/filters/TreeFilter';
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import { ConfigManager } from '../../classes/managers/ConfigManager';
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import { EpiHighlightingManager } from '../../classes/managers/EpiHighlightingManager';
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import { NotificationManager } from '../../classes/managers/NotificationManager';
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import { QueryClientManager } from '../../classes/managers/QueryClientManager';
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import type {
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TreeConfiguration,
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EPI_ZONE,
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Stratification,
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CaseTypeRowValue,
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StratificationLegendaItem,
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FindSimilarCasesResult,
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} from '../../models/epi';
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import {
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STRATIFICATION_MODE,
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STRATIFICATION_SELECTED,
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} from '../../models/epi';
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import type { FilterValues } from '../../models/filter';
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import { QUERY_KEY } from '../../models/query';
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import type { TreeNode } from '../../models/tree';
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import { AxiosUtil } from '../../utils/AxiosUtil';
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import {
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SELECTION_FILTER_GROUP,
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TREE_FILTER_GROUP,
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CaseTypeUtil,
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} from '../../utils/CaseTypeUtil';
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import { CaseUtil } from '../../utils/CaseUtil';
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import { EpiFilterUtil } from '../../utils/EpiFilterUtil';
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import { NewickUtil } from '../../utils/NewickUtil';
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import { EpiTreeUtil } from '../../utils/EpiTreeUtil';
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import { ObjectUtil } from '../../utils/ObjectUtil';
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import { QueryUtil } from '../../utils/QueryUtil';
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import { EpiDataManager } from '../../classes/managers/EpiDataManager';
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interface WidgetData {
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isUnavailable: boolean;
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}
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interface StratifiableColumn {
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col: Col;
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enabled: boolean;
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}
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interface EpiTreeWidgetData extends WidgetData {
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treeConfiguration: TreeConfiguration;
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verticalScrollPosition: number;
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horizontalScrollPosition: number;
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zoomLevel: number;
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}
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interface EpiListWidgetData extends WidgetData {
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visibleItemItemIndex: number;
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}
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interface EpiCurveWidgetData extends WidgetData {
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dimensionId: string;
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columnId: string;
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}
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interface EpiMapWidgetData extends WidgetData {
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dimensionId: string;
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columnId: string;
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}
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interface EpiDashboardStoreState extends TableStoreState<Case> {
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expandedZone: EPI_ZONE;
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epiCurveWidgetData: EpiCurveWidgetData;
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epiListWidgetData: EpiListWidgetData;
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epiMapWidgetData: EpiMapWidgetData;
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epiTreeWidgetData: EpiTreeWidgetData;
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newick: string;
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stratification: Stratification;
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tree: TreeNode;
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treeResponse: TreeNode;
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treeAddresses: {
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[key: string]: {
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addresses: { [key: string]: string };
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algorithmCode: string;
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};
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};
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completeCaseType: CompleteCaseType;
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caseSetId: string;
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stratifyableColumns: StratifiableColumn[];
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numVisibleAttributesInSummary: number;
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isMaxResultsExceeded: boolean;
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isMaxResultsExceededDismissed: boolean;
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findSimilarCasesResults: FindSimilarCasesResult[];
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}
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interface EpiDashboardStoreActions extends TableStoreActions<Case> {
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expandZone: (zone: EPI_ZONE) => void;
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removeTreeFilter: () => Promise<void>;
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mutateCachedCase: (caseId: string, item: Case) => void;
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setPhylogeneticTreeResponse: (phylogeneticTree: PhylogeneticTree) => void;
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stratify: (mode: STRATIFICATION_MODE, col?: Col) => void;
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updateEpiCurveWidgetData: (data: Partial<EpiCurveWidgetData>) => void;
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updateEpiListWidgetData: (data: Partial<EpiListWidgetData>) => void;
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updateEpiMapWidgetData: (data: Partial<EpiMapWidgetData>) => void;
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updateEpiTreeWidgetData: (data: Partial<EpiTreeWidgetData>) => void;
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addTreeFilter: (nodeId: string) => Promise<void>;
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treeFilterStepOut: () => Promise<void>;
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destroy: () => void;
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resetTreeAddresses: () => void;
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setNumVisibleAttributesInSummary: (numVisibleAttributesInSummary: number) => void;
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setFindSimilarCasesResults: (findSimilarCasesResults: FindSimilarCasesResult[]) => Promise<void>;
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// Private
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reloadStratification: () => void;
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reloadTree: () => void;
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reloadStratifyableColumns: () => void;
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}
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export type EpiDashboardStore = EpiDashboardStoreState & EpiDashboardStoreActions;
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export type CreateEpiDashboardStoreKwArgs = CreateTableStoreKwArgs<Case> & {
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completeCaseType: CompleteCaseType;
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caseSetId: string;
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};
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export interface CreateEpiDashboardStoreInitialStateKwArgs extends CreateTableStoreInitialStateKwArgs<Case> {
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completeCaseType: CompleteCaseType;
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caseSetId: string;
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}
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const rowValueComperator = (a: CaseTypeRowValue, b: CaseTypeRowValue): number => {
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if (a.raw === b.raw) {
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return 0;
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}
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if (a.isMissing) {
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return 1;
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}
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if (b.isMissing) {
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return -1;
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}
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return a.short.localeCompare(b.short);
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};
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const createWidgetDataInitialState = (): WidgetData => ({
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isUnavailable: false,
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});
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const createEpiTreeWidgetDataInitialState = (): EpiTreeWidgetData => ({
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...createWidgetDataInitialState(),
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treeConfiguration: null,
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verticalScrollPosition: 0,
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horizontalScrollPosition: 0,
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zoomLevel: 1,
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});
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const createEpiDashboardStoreInitialState = (kwArgs: CreateEpiDashboardStoreInitialStateKwArgs): EpiDashboardStoreState => {
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const { completeCaseType, caseSetId, ...createTableStoreInitialStateKwArgs } = kwArgs;
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return {
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...createTableStoreInitialState<Case>(createTableStoreInitialStateKwArgs),
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filteredData: {
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[SELECTION_FILTER_GROUP]: [],
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[TREE_FILTER_GROUP]: [],
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},
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stratifyableColumns: [],
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frontendFilterPriorities: [SELECTION_FILTER_GROUP, TREE_FILTER_GROUP],
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completeCaseType,
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caseSetId,
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expandedZone: null,
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stratification: null,
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tree: null,
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treeAddresses: {},
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newick: null,
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treeResponse: null,
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findSimilarCasesResults: [],
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epiTreeWidgetData: createEpiTreeWidgetDataInitialState(),
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epiListWidgetData: {
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...createWidgetDataInitialState(),
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visibleItemItemIndex: 0,
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},
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epiCurveWidgetData: {
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...createWidgetDataInitialState(),
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dimensionId: null,
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columnId: null,
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},
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epiMapWidgetData: {
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...createWidgetDataInitialState(),
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dimensionId: null,
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columnId: null,
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},
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numVisibleAttributesInSummary: ConfigManager.instance.config.epi.INITIAL_NUM_VISIBLE_ATTRIBUTES_IN_CASE_SUMMARY,
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isMaxResultsExceeded: false,
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isMaxResultsExceededDismissed: false,
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};
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};
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export const createEpiDashboardStore = (kwArgs: CreateEpiDashboardStoreKwArgs) => {
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const { completeCaseType, caseSetId, ...createTableStoreKwArgs } = kwArgs;
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const epiDashboardStore = createStore<EpiDashboardStore>()(
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persist(
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(set, get) => {
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const initialState = createEpiDashboardStoreInitialState({
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caseSetId,
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completeCaseType,
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...createTableStoreKwArgs,
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});
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const tableStoreActions = createTableStoreActions<Case>({
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set,
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get,
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});
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return {
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...initialState,
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...tableStoreActions,
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setNumVisibleAttributesInSummary: (numVisibleAttributesInSummary: number) => {
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set({ numVisibleAttributesInSummary });
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},
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resetTreeAddresses: () => {
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set({ treeAddresses: {} });
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},
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addTreeFilter: async (nodeId) => {
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const { setFilterValue, filters, resetTreeAddresses } = get();
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resetTreeAddresses();
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const treeFilter = filters.find(filter => filter instanceof TreeFilter);
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await setFilterValue(treeFilter.id, nodeId);
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},
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treeFilterStepOut: async () => {
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const { setFilterValue, filters, treeResponse, resetTreeAddresses } = get();
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resetTreeAddresses();
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const treeFilter = filters.find(filter => filter instanceof TreeFilter);
|
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258
|
-
const zoomedInTreeNodeName = EpiTreeUtil.findNewTreeRoot(treeResponse, treeFilter?.filterValue, 'parent').name;
|
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259
|
-
await setFilterValue(treeFilter.id, zoomedInTreeNodeName === treeResponse.name ? null : zoomedInTreeNodeName);
|
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260
|
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},
|
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261
|
-
removeTreeFilter: async () => {
|
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262
|
-
const { setFilterValue, filters, resetTreeAddresses } = get();
|
|
263
|
-
const treeFilter = filters.find(filter => filter instanceof TreeFilter);
|
|
264
|
-
if (treeFilter.filterValue) {
|
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265
|
-
resetTreeAddresses();
|
|
266
|
-
await setFilterValue(treeFilter.id, treeFilter.initialFilterValue);
|
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267
|
-
}
|
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268
|
-
},
|
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269
|
-
setFindSimilarCasesResults: async (findSimilarCasesResults: FindSimilarCasesResult[]) => {
|
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270
|
-
const { filters } = get();
|
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271
|
-
const filterValues: FilterValues = {};
|
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272
|
-
filters.forEach(filter => {
|
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273
|
-
filterValues[filter.id] = filter.filterValue;
|
|
274
|
-
});
|
|
275
|
-
const treeFilter = filters.find(filter => filter instanceof TreeFilter);
|
|
276
|
-
const hasTreeFilter = !treeFilter.isInitialFilterValue(filterValues[treeFilter.id]);
|
|
277
|
-
if (hasTreeFilter) {
|
|
278
|
-
NotificationManager.instance.showNotification({
|
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279
|
-
message: t`The tree filter has automatically been removed, because it's incompatible with the results of "Find Similar Cases".`,
|
|
280
|
-
severity: 'info',
|
|
281
|
-
});
|
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282
|
-
await tableStoreActions.setFilterValues({
|
|
283
|
-
...filterValues,
|
|
284
|
-
[treeFilter.id]: treeFilter.initialFilterValue,
|
|
285
|
-
});
|
|
286
|
-
}
|
|
287
|
-
set({ findSimilarCasesResults });
|
|
288
|
-
await get().fetchData();
|
|
289
|
-
},
|
|
290
|
-
stratify: (mode, col) => {
|
|
291
|
-
const { sortedData, selectedIds } = get();
|
|
292
|
-
const caseIdColors: { [key: string]: string } = {};
|
|
293
|
-
|
|
294
|
-
const legendaItems: StratificationLegendaItem[] = [];
|
|
295
|
-
const legendaItemsByColor: { [key: string]: StratificationLegendaItem } = {};
|
|
296
|
-
const legendaItemsByValue: { [key: string]: StratificationLegendaItem } = {};
|
|
297
|
-
|
|
298
|
-
const { STRATIFICATION_COLORS, STRATIFICATION_COLOR_ITEM_MISSING } = ConfigManager.instance.config.epi;
|
|
299
|
-
|
|
300
|
-
if (mode === STRATIFICATION_MODE.FIELD) {
|
|
301
|
-
const column = completeCaseType.ref_cols[col.ref_col_id];
|
|
302
|
-
const conceptSetConceptIds = EpiDataManager.instance.data.conceptsIdsBySetId[column.concept_set_id];
|
|
303
|
-
if (conceptSetConceptIds) {
|
|
304
|
-
if (conceptSetConceptIds.length <= STRATIFICATION_COLORS.length) {
|
|
305
|
-
conceptSetConceptIds.map(conceptId => EpiDataManager.instance.data.conceptsById[conceptId]).sort((a, b) => {
|
|
306
|
-
if (([
|
|
307
|
-
ColType.ORDINAL,
|
|
308
|
-
ColType.INTERVAL,
|
|
309
|
-
ColType.DECIMAL_0,
|
|
310
|
-
ColType.DECIMAL_1,
|
|
311
|
-
ColType.DECIMAL_2,
|
|
312
|
-
ColType.DECIMAL_3,
|
|
313
|
-
ColType.DECIMAL_4,
|
|
314
|
-
ColType.DECIMAL_5,
|
|
315
|
-
ColType.DECIMAL_6,
|
|
316
|
-
] as ColType[]).includes(column.col_type) && a.rank !== b.rank) {
|
|
317
|
-
return a.rank - b.rank;
|
|
318
|
-
}
|
|
319
|
-
return a.code.localeCompare(b.code);
|
|
320
|
-
}).forEach((concept, index) => {
|
|
321
|
-
const color = STRATIFICATION_COLORS[index];
|
|
322
|
-
const legendaItem: StratificationLegendaItem = {
|
|
323
|
-
caseIds: [],
|
|
324
|
-
color,
|
|
325
|
-
rowValue: {
|
|
326
|
-
isMissing: false,
|
|
327
|
-
raw: concept.id,
|
|
328
|
-
full: `${concept.code} (${concept.name})`,
|
|
329
|
-
short: concept.code,
|
|
330
|
-
long: concept.name,
|
|
331
|
-
},
|
|
332
|
-
columnType: column.col_type,
|
|
333
|
-
};
|
|
334
|
-
legendaItemsByColor[color] = legendaItem;
|
|
335
|
-
legendaItemsByValue[concept.id] = legendaItem;
|
|
336
|
-
legendaItems.push(legendaItem);
|
|
337
|
-
});
|
|
338
|
-
const legendaItemMissingData: StratificationLegendaItem = {
|
|
339
|
-
caseIds: [],
|
|
340
|
-
color: STRATIFICATION_COLOR_ITEM_MISSING,
|
|
341
|
-
rowValue: CaseUtil.getMissingRowValue(''),
|
|
342
|
-
columnType: column.col_type,
|
|
343
|
-
};
|
|
344
|
-
legendaItemsByColor[STRATIFICATION_COLOR_ITEM_MISSING] = legendaItemMissingData;
|
|
345
|
-
legendaItemsByValue[''] = legendaItemMissingData;
|
|
346
|
-
legendaItems.push(legendaItemMissingData);
|
|
347
|
-
|
|
348
|
-
sortedData.forEach(row => {
|
|
349
|
-
const rowValue = CaseUtil.getRowValue(row.content, col, completeCaseType);
|
|
350
|
-
const legendaItem = rowValue.isMissing ? legendaItemMissingData : legendaItemsByValue[rowValue.raw];
|
|
351
|
-
legendaItem.caseIds.push(row.id);
|
|
352
|
-
caseIdColors[row.id] = legendaItem.color;
|
|
353
|
-
});
|
|
354
|
-
if (legendaItemMissingData.caseIds.length === 0) {
|
|
355
|
-
legendaItems.splice(legendaItems.indexOf(legendaItemMissingData), 1);
|
|
356
|
-
delete legendaItemsByColor[STRATIFICATION_COLOR_ITEM_MISSING];
|
|
357
|
-
delete legendaItemsByValue[''];
|
|
358
|
-
}
|
|
359
|
-
} else {
|
|
360
|
-
const rowValues = sortedData.map(row => CaseUtil.getRowValue(row.content, col, completeCaseType));
|
|
361
|
-
const uniqueRowValues = uniqBy(rowValues, (rowValue => rowValue.raw)).sort((a, b) => {
|
|
362
|
-
return rowValueComperator(a, b);
|
|
363
|
-
});
|
|
364
|
-
|
|
365
|
-
uniqueRowValues.forEach((rowValue, index) => {
|
|
366
|
-
const color = rowValue.isMissing ? STRATIFICATION_COLOR_ITEM_MISSING : STRATIFICATION_COLORS[index];
|
|
367
|
-
const legendaItem: StratificationLegendaItem = {
|
|
368
|
-
caseIds: [],
|
|
369
|
-
color,
|
|
370
|
-
rowValue,
|
|
371
|
-
columnType: column.col_type,
|
|
372
|
-
};
|
|
373
|
-
|
|
374
|
-
legendaItemsByColor[color] = legendaItem;
|
|
375
|
-
legendaItemsByValue[rowValue.raw] = legendaItem;
|
|
376
|
-
legendaItems.push(legendaItem);
|
|
377
|
-
});
|
|
378
|
-
sortedData.forEach(row => {
|
|
379
|
-
const rowValue = CaseUtil.getRowValue(row.content, col, completeCaseType);
|
|
380
|
-
const legendaItem = legendaItemsByValue[rowValue.raw];
|
|
381
|
-
legendaItem.caseIds.push(row.id);
|
|
382
|
-
caseIdColors[row.id] = legendaItem.color;
|
|
383
|
-
});
|
|
384
|
-
}
|
|
385
|
-
|
|
386
|
-
} else {
|
|
387
|
-
const rawValues = sortedData.map(row => CaseUtil.getRowValue(row.content, col, completeCaseType));
|
|
388
|
-
const uniqueRowValues = uniqBy(rawValues, v => v.raw).sort(rowValueComperator);
|
|
389
|
-
|
|
390
|
-
uniqueRowValues.forEach((rowValue, index) => {
|
|
391
|
-
const color = rowValue.isMissing ? STRATIFICATION_COLOR_ITEM_MISSING : STRATIFICATION_COLORS[index];
|
|
392
|
-
const legendaItem: StratificationLegendaItem = {
|
|
393
|
-
caseIds: [],
|
|
394
|
-
color,
|
|
395
|
-
rowValue,
|
|
396
|
-
columnType: column.col_type,
|
|
397
|
-
};
|
|
398
|
-
|
|
399
|
-
legendaItemsByColor[color] = legendaItem;
|
|
400
|
-
legendaItemsByValue[rowValue.raw] = legendaItem;
|
|
401
|
-
legendaItems.push(legendaItem);
|
|
402
|
-
});
|
|
403
|
-
|
|
404
|
-
sortedData.forEach(row => {
|
|
405
|
-
const rowValue = CaseUtil.getRowValue(row.content, col, completeCaseType);
|
|
406
|
-
const legendaItem = legendaItemsByValue[rowValue.raw];
|
|
407
|
-
legendaItem.caseIds.push(row.id);
|
|
408
|
-
caseIdColors[row.id] = legendaItem.color;
|
|
409
|
-
});
|
|
410
|
-
}
|
|
411
|
-
set({
|
|
412
|
-
stratification: {
|
|
413
|
-
mode: STRATIFICATION_MODE.FIELD,
|
|
414
|
-
col,
|
|
415
|
-
caseIdColors,
|
|
416
|
-
legendaItems,
|
|
417
|
-
legendaItemsByColor,
|
|
418
|
-
legendaItemsByValue,
|
|
419
|
-
},
|
|
420
|
-
});
|
|
421
|
-
} else if (mode === STRATIFICATION_MODE.SELECTION) {
|
|
422
|
-
const rawValues: STRATIFICATION_SELECTED[] = [STRATIFICATION_SELECTED.SELECTED, STRATIFICATION_SELECTED.UNSELECTED];
|
|
423
|
-
|
|
424
|
-
rawValues.forEach(rawValue => {
|
|
425
|
-
const color = rawValue === STRATIFICATION_SELECTED.SELECTED ? STRATIFICATION_COLORS[0] : STRATIFICATION_COLORS[1];
|
|
426
|
-
const presentationValue = rawValue === STRATIFICATION_SELECTED.SELECTED ? t`Selected` : t`Unselected`;
|
|
427
|
-
const legendaItem: StratificationLegendaItem = {
|
|
428
|
-
caseIds: [],
|
|
429
|
-
color,
|
|
430
|
-
rowValue: {
|
|
431
|
-
raw: rawValue,
|
|
432
|
-
full: presentationValue,
|
|
433
|
-
long: presentationValue,
|
|
434
|
-
short: presentationValue,
|
|
435
|
-
isMissing: false,
|
|
436
|
-
},
|
|
437
|
-
};
|
|
438
|
-
|
|
439
|
-
legendaItemsByColor[color] = legendaItem;
|
|
440
|
-
legendaItemsByValue[rawValue] = legendaItem;
|
|
441
|
-
legendaItems.push(legendaItem);
|
|
442
|
-
});
|
|
443
|
-
|
|
444
|
-
sortedData.forEach(row => {
|
|
445
|
-
const legendaItem = selectedIds.includes(row.id) ? legendaItemsByValue[STRATIFICATION_SELECTED.SELECTED] : legendaItemsByValue[STRATIFICATION_SELECTED.UNSELECTED];
|
|
446
|
-
|
|
447
|
-
legendaItem.caseIds.push(row.id);
|
|
448
|
-
caseIdColors[row.id] = legendaItem.color;
|
|
449
|
-
});
|
|
450
|
-
set({
|
|
451
|
-
stratification: {
|
|
452
|
-
mode: STRATIFICATION_MODE.SELECTION,
|
|
453
|
-
col,
|
|
454
|
-
caseIdColors,
|
|
455
|
-
legendaItems,
|
|
456
|
-
legendaItemsByColor,
|
|
457
|
-
legendaItemsByValue,
|
|
458
|
-
},
|
|
459
|
-
});
|
|
460
|
-
} else {
|
|
461
|
-
set({ stratification: null });
|
|
462
|
-
}
|
|
463
|
-
},
|
|
464
|
-
setSelectedIds: (selectedIds: string[]) => {
|
|
465
|
-
tableStoreActions.setSelectedIds(selectedIds);
|
|
466
|
-
|
|
467
|
-
const { stratification, stratify } = get();
|
|
468
|
-
|
|
469
|
-
// Apply stratification
|
|
470
|
-
if (selectedIds.length && (!stratification || stratification?.mode === STRATIFICATION_MODE.SELECTION)) {
|
|
471
|
-
stratify(STRATIFICATION_MODE.SELECTION);
|
|
472
|
-
} else if (stratification?.mode === STRATIFICATION_MODE.SELECTION && !selectedIds.length) {
|
|
473
|
-
stratify(null);
|
|
474
|
-
}
|
|
475
|
-
},
|
|
476
|
-
expandZone: (expandedZone: EPI_ZONE) => {
|
|
477
|
-
set({ expandedZone });
|
|
478
|
-
},
|
|
479
|
-
updateEpiTreeWidgetData: (data: Partial<EpiTreeWidgetData>) => {
|
|
480
|
-
set({ epiTreeWidgetData: produce(get().epiTreeWidgetData, (draft) => ({ ...draft, ...data })) });
|
|
481
|
-
},
|
|
482
|
-
updateEpiListWidgetData: (data: Partial<EpiListWidgetData>) => {
|
|
483
|
-
set({ epiListWidgetData: produce(get().epiListWidgetData, (draft) => ({ ...draft, ...data })) });
|
|
484
|
-
},
|
|
485
|
-
updateEpiCurveWidgetData: (data: Partial<EpiCurveWidgetData>) => {
|
|
486
|
-
set({ epiCurveWidgetData: produce(get().epiCurveWidgetData, (draft) => ({ ...draft, ...data })) });
|
|
487
|
-
},
|
|
488
|
-
updateEpiMapWidgetData: (data: Partial<EpiMapWidgetData>) => {
|
|
489
|
-
set({ epiMapWidgetData: produce(get().epiMapWidgetData, (draft) => ({ ...draft, ...data })) });
|
|
490
|
-
},
|
|
491
|
-
mutateCachedCase: (caseId: string, item: Case) => {
|
|
492
|
-
const queryClient = QueryClientManager.instance.queryClient;
|
|
493
|
-
const currentCases = QueryUtil.getValidQueryData<Case[]>(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY));
|
|
494
|
-
queryClient.setQueryData(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY), currentCases.map(c => c.id === caseId ? item : c));
|
|
495
|
-
},
|
|
496
|
-
setPhylogeneticTreeResponse: (phylogeneticTree) => {
|
|
497
|
-
const { reloadSortedData, reloadTree, reloadSelectedIds, newick } = get();
|
|
498
|
-
|
|
499
|
-
if (newick === phylogeneticTree.newick_repr) {
|
|
500
|
-
return;
|
|
501
|
-
}
|
|
502
|
-
|
|
503
|
-
if (phylogeneticTree.newick_repr && phylogeneticTree.newick_repr.trim().length > 0 && phylogeneticTree.newick_repr !== '();') {
|
|
504
|
-
// parse the newick into a tree
|
|
505
|
-
const parsedTree = NewickUtil.parse(phylogeneticTree.newick_repr);
|
|
506
|
-
const sanitizedTree = EpiTreeUtil.sanitizeTree(parsedTree);
|
|
507
|
-
|
|
508
|
-
// the tree determines the order of the line list
|
|
509
|
-
const sortedIds = NewickUtil.getSortedNames(sanitizedTree);
|
|
510
|
-
|
|
511
|
-
set({
|
|
512
|
-
newick: phylogeneticTree.newick_repr,
|
|
513
|
-
treeResponse: sanitizedTree,
|
|
514
|
-
tree: sanitizedTree,
|
|
515
|
-
sortedIds,
|
|
516
|
-
});
|
|
517
|
-
} else {
|
|
518
|
-
set({
|
|
519
|
-
newick: phylogeneticTree.newick_repr,
|
|
520
|
-
treeResponse: null,
|
|
521
|
-
tree: null,
|
|
522
|
-
sortedIds: [],
|
|
523
|
-
});
|
|
524
|
-
}
|
|
525
|
-
|
|
526
|
-
reloadTree();
|
|
527
|
-
reloadSortedData();
|
|
528
|
-
reloadSelectedIds();
|
|
529
|
-
},
|
|
530
|
-
|
|
531
|
-
// Overwrite table store actions
|
|
532
|
-
setFilterValues: async (filterValues: FilterValues) => {
|
|
533
|
-
const { filters: prevFilters } = get();
|
|
534
|
-
const previousFilterValues: FilterValues = {};
|
|
535
|
-
prevFilters.forEach(filter => {
|
|
536
|
-
previousFilterValues[filter.id] = filter.filterValue;
|
|
537
|
-
});
|
|
538
|
-
const filterValuesDiff = ObjectUtil.getObjectDiff(previousFilterValues, filterValues);
|
|
539
|
-
const treeFilter = prevFilters.find(filter => filter instanceof TreeFilter);
|
|
540
|
-
const hadTreeFilter = !treeFilter.isInitialFilterValue(previousFilterValues[treeFilter.id]);
|
|
541
|
-
if (hadTreeFilter && !filterValuesDiff.includes(treeFilter.id)) {
|
|
542
|
-
NotificationManager.instance.showNotification({
|
|
543
|
-
message: t`The tree filter has automatically been removed, because it's incompatible with the results of the other filters.`,
|
|
544
|
-
severity: 'info',
|
|
545
|
-
});
|
|
546
|
-
await tableStoreActions.setFilterValues({
|
|
547
|
-
...filterValues,
|
|
548
|
-
[treeFilter.id]: treeFilter.initialFilterValue,
|
|
549
|
-
});
|
|
550
|
-
} else {
|
|
551
|
-
await tableStoreActions.setFilterValues(filterValues);
|
|
552
|
-
}
|
|
553
|
-
},
|
|
554
|
-
reloadFilterData: () => {
|
|
555
|
-
const { reloadStratification, reloadStratifyableColumns } = get();
|
|
556
|
-
tableStoreActions.reloadFilterData();
|
|
557
|
-
reloadStratifyableColumns();
|
|
558
|
-
reloadStratification();
|
|
559
|
-
},
|
|
560
|
-
|
|
561
|
-
// Private
|
|
562
|
-
reloadFilterPriorityData: (filterPriority: string, data: Case[]): Case[] => {
|
|
563
|
-
const { filters, reloadTree } = get();
|
|
564
|
-
if (filterPriority === SELECTION_FILTER_GROUP) {
|
|
565
|
-
const selectionFilter = filters.find(filter => filter instanceof SelectionFilter);
|
|
566
|
-
let filteredCases: Case[];
|
|
567
|
-
if (!selectionFilter.isInitialFilterValue()) {
|
|
568
|
-
const caseIdsInSelection = selectionFilter.filterValue;
|
|
569
|
-
filteredCases = data.filter(c => caseIdsInSelection.includes(c.id));
|
|
570
|
-
} else {
|
|
571
|
-
filteredCases = data;
|
|
572
|
-
}
|
|
573
|
-
return filteredCases;
|
|
574
|
-
}
|
|
575
|
-
if (filterPriority === TREE_FILTER_GROUP) {
|
|
576
|
-
const treeFilter = filters.find(filter => filter instanceof TreeFilter);
|
|
577
|
-
reloadTree();
|
|
578
|
-
const { tree } = get();
|
|
579
|
-
let filteredCases: Case[];
|
|
580
|
-
if (!treeFilter.isInitialFilterValue()) {
|
|
581
|
-
const { subTreeLeaveNames } = tree;
|
|
582
|
-
filteredCases = data.filter(c => subTreeLeaveNames.includes(c.id));
|
|
583
|
-
} else {
|
|
584
|
-
filteredCases = data;
|
|
585
|
-
}
|
|
586
|
-
return filteredCases;
|
|
587
|
-
}
|
|
588
|
-
throw new Error(`Unknown filter group: ${filterPriority}`);
|
|
589
|
-
},
|
|
590
|
-
reloadTree: () => {
|
|
591
|
-
const { filters, treeResponse, epiTreeWidgetData: { treeConfiguration } } = get();
|
|
592
|
-
const zoomedInTreeNodeName = filters.find(filter => filter instanceof TreeFilter)?.filterValue;
|
|
593
|
-
const tree = zoomedInTreeNodeName ? EpiTreeUtil.findNewTreeRoot(treeResponse, zoomedInTreeNodeName, 'node') : treeResponse;
|
|
594
|
-
if (tree) {
|
|
595
|
-
set({
|
|
596
|
-
treeAddresses: {
|
|
597
|
-
...get().treeAddresses,
|
|
598
|
-
[treeConfiguration.col.id]: {
|
|
599
|
-
addresses: EpiTreeUtil.createTreeAddresses(tree),
|
|
600
|
-
algorithmCode: treeConfiguration.treeAlgorithm.code,
|
|
601
|
-
},
|
|
602
|
-
},
|
|
603
|
-
});
|
|
604
|
-
}
|
|
605
|
-
set({ tree });
|
|
606
|
-
},
|
|
607
|
-
reloadStratifyableColumns: () => {
|
|
608
|
-
const { filteredData, frontendFilterPriorities } = get();
|
|
609
|
-
|
|
610
|
-
const data = filteredData[last(frontendFilterPriorities)];
|
|
611
|
-
const { ALLOWED_COL_TYPES_FOR_STRATIFICATION, STRATIFICATION_COLORS } = ConfigManager.instance.config.epi;
|
|
612
|
-
|
|
613
|
-
const filteredCols = CaseTypeUtil.getCols(completeCaseType).filter(col => {
|
|
614
|
-
const column = completeCaseType.ref_cols[col.ref_col_id];
|
|
615
|
-
if (!ALLOWED_COL_TYPES_FOR_STRATIFICATION.includes(column.col_type)) {
|
|
616
|
-
return false;
|
|
617
|
-
}
|
|
618
|
-
return true;
|
|
619
|
-
});
|
|
620
|
-
const stratifyableColumns = filteredCols.map<StratifiableColumn>(col => {
|
|
621
|
-
const numUniqueValues = uniq(data.map(row => CaseUtil.getRowValue(row.content, col, completeCaseType).raw)).length;
|
|
622
|
-
let enabled = true;
|
|
623
|
-
if (numUniqueValues === 0 || numUniqueValues > STRATIFICATION_COLORS.length) {
|
|
624
|
-
enabled = false;
|
|
625
|
-
}
|
|
626
|
-
return {
|
|
627
|
-
col,
|
|
628
|
-
enabled,
|
|
629
|
-
};
|
|
630
|
-
});
|
|
631
|
-
set({ stratifyableColumns });
|
|
632
|
-
},
|
|
633
|
-
reloadStratification: () => {
|
|
634
|
-
const { stratification, stratify, stratifyableColumns } = get();
|
|
635
|
-
if (stratification?.mode === STRATIFICATION_MODE.FIELD) {
|
|
636
|
-
const activeStratifyableColumn = stratifyableColumns.find(c => c.col.ref_col_id === stratification.col.ref_col_id);
|
|
637
|
-
if (!activeStratifyableColumn?.enabled) {
|
|
638
|
-
// column no longer stratifiable
|
|
639
|
-
NotificationManager.instance.showNotification({
|
|
640
|
-
message: t`The grouping column is no longer available. Grouping has been removed.`,
|
|
641
|
-
severity: 'info',
|
|
642
|
-
});
|
|
643
|
-
stratify(null);
|
|
644
|
-
return;
|
|
645
|
-
}
|
|
646
|
-
}
|
|
647
|
-
|
|
648
|
-
if (!stratification) {
|
|
649
|
-
return;
|
|
650
|
-
}
|
|
651
|
-
stratify(stratification.mode, stratification.col);
|
|
652
|
-
},
|
|
653
|
-
destroy: () => {
|
|
654
|
-
EpiHighlightingManager.instance.reset();
|
|
655
|
-
tableStoreActions.destroy();
|
|
656
|
-
},
|
|
657
|
-
fetchData: async () => {
|
|
658
|
-
set({ isMaxResultsExceeded: false, isMaxResultsExceededDismissed: false, dataError: null });
|
|
659
|
-
const { fetchAbortController: previousFetchAbortController, globalAbortSignal, findSimilarCasesResults } = get();
|
|
660
|
-
const queryClient = QueryClientManager.instance.queryClient;
|
|
661
|
-
|
|
662
|
-
const similarCaseIds = findSimilarCasesResults?.flatMap((result) => result.similarCaseIds) || [];
|
|
663
|
-
|
|
664
|
-
if (previousFetchAbortController && !previousFetchAbortController.signal.aborted) {
|
|
665
|
-
previousFetchAbortController.abort();
|
|
666
|
-
}
|
|
667
|
-
const fetchAbortController = new AbortController();
|
|
668
|
-
const globalAbortSignalListener = () => {
|
|
669
|
-
fetchAbortController.abort();
|
|
670
|
-
globalAbortSignal.removeEventListener('abort', globalAbortSignalListener);
|
|
671
|
-
};
|
|
672
|
-
globalAbortSignal.addEventListener('abort', globalAbortSignalListener);
|
|
673
|
-
|
|
674
|
-
set({ fetchAbortController });
|
|
675
|
-
set({ isDataLoading: true });
|
|
676
|
-
const { filters, setBaseData } = get();
|
|
677
|
-
const activeFilters = filters
|
|
678
|
-
.filter(filter => filter.filterMode === FILTER_MODE.BACKEND && !filter.isInitialFilterValue())
|
|
679
|
-
.map(activeFilter => activeFilter.toBackendFilter())
|
|
680
|
-
.filter(x => !!x);
|
|
681
|
-
const compositeFilter: TypedCompositeFilter = activeFilters.length
|
|
682
|
-
? {
|
|
683
|
-
type: 'COMPOSITE',
|
|
684
|
-
filters: activeFilters,
|
|
685
|
-
operator: 'AND',
|
|
686
|
-
}
|
|
687
|
-
: undefined;
|
|
688
|
-
|
|
689
|
-
const caseQuery: CaseQuery = {
|
|
690
|
-
case_type_id: completeCaseType.id,
|
|
691
|
-
case_set_ids: caseSetId ? [caseSetId] : undefined,
|
|
692
|
-
filter: compositeFilter,
|
|
693
|
-
};
|
|
694
|
-
const retrieveCaseIdsByQueryQueryKey = QueryUtil.getRetrieveCaseIdsByQueryKey(completeCaseType.id, caseQuery);
|
|
695
|
-
|
|
696
|
-
try {
|
|
697
|
-
let currentCaseIdsByQueryResponse = QueryUtil.getValidQueryData<CaseQueryResult>(retrieveCaseIdsByQueryQueryKey);
|
|
698
|
-
if (!currentCaseIdsByQueryResponse) {
|
|
699
|
-
const retrieveCaseIdsByQueryResponse = (await CaseApi.instance.retrieveCaseIdsByQuery(caseQuery, { signal: fetchAbortController.signal })).data;
|
|
700
|
-
currentCaseIdsByQueryResponse = retrieveCaseIdsByQueryResponse;
|
|
701
|
-
queryClient.setQueryData(retrieveCaseIdsByQueryQueryKey, currentCaseIdsByQueryResponse);
|
|
702
|
-
}
|
|
703
|
-
|
|
704
|
-
// Note: Combine the case ids from the query with similar case ids from the "find similar cases" feature, to make sure the similar cases are included in the data even if they do not match the current filters.
|
|
705
|
-
// It's possible the user added similar cases to the current case_set after. Then the case will be included in the query AND the similar case result. So we need to make sure to only include unique case ids.
|
|
706
|
-
const caseIds = uniq([...currentCaseIdsByQueryResponse.case_ids, ...similarCaseIds]);
|
|
707
|
-
|
|
708
|
-
const currentCases = QueryUtil.getValidQueryData<Case[]>(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY));
|
|
709
|
-
const currentCaseIds = (currentCases ?? []).map(x => x.id);
|
|
710
|
-
const missingCaseIds = difference(caseIds, currentCaseIds);
|
|
711
|
-
if (missingCaseIds.length) {
|
|
712
|
-
const missingCasesResult = (await CaseApi.instance.retrieveCasesByIds({
|
|
713
|
-
case_type_id: completeCaseType.id,
|
|
714
|
-
case_ids: missingCaseIds,
|
|
715
|
-
}, { signal: fetchAbortController.signal })).data;
|
|
716
|
-
queryClient.setQueryData(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY), [...currentCases ?? [], ...missingCasesResult]);
|
|
717
|
-
}
|
|
718
|
-
|
|
719
|
-
const casesMap = new Map((QueryUtil.getValidQueryData<Case[]>(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY)) ?? []).map(x => [x.id, x]));
|
|
720
|
-
casesMap.forEach((item) => {
|
|
721
|
-
queryClient.setQueryData(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY, item.id), item);
|
|
722
|
-
});
|
|
723
|
-
const cases = caseIds.map(id => casesMap.get(id));
|
|
724
|
-
|
|
725
|
-
setBaseData(cases);
|
|
726
|
-
set({ isDataLoading: false, isMaxResultsExceeded: currentCaseIdsByQueryResponse.is_max_results_exceeded });
|
|
727
|
-
} catch (error: unknown) {
|
|
728
|
-
if (!AxiosUtil.isAxiosCanceledError(error)) {
|
|
729
|
-
set({ dataError: error as Error });
|
|
730
|
-
}
|
|
731
|
-
} finally {
|
|
732
|
-
globalAbortSignal.removeEventListener('abort', globalAbortSignalListener);
|
|
733
|
-
}
|
|
734
|
-
},
|
|
735
|
-
};
|
|
736
|
-
},
|
|
737
|
-
createTableStorePersistConfiguration<Case, EpiDashboardStore>(kwArgs.storageNamePostFix, kwArgs.storageVersion, (state) => {
|
|
738
|
-
return {
|
|
739
|
-
epiTreeWidgetData: {
|
|
740
|
-
...createEpiTreeWidgetDataInitialState(),
|
|
741
|
-
treeConfiguration: state.epiTreeWidgetData.treeConfiguration,
|
|
742
|
-
},
|
|
743
|
-
numVisibleAttributesInSummary: state.numVisibleAttributesInSummary,
|
|
744
|
-
};
|
|
745
|
-
}),
|
|
746
|
-
),
|
|
747
|
-
);
|
|
748
|
-
epiDashboardStore.getState().setFilters(EpiFilterUtil.createFilters(completeCaseType), EpiFilterUtil.createFilterDimensions(completeCaseType), [SELECTION_FILTER_GROUP, TREE_FILTER_GROUP]);
|
|
749
|
-
return epiDashboardStore;
|
|
750
|
-
};
|