npm - @gen-epix/ui-client-casedb - Versions diffs - 4.0.0 - Mend

@gen-epix/ui-client-casedb 4.0.0

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package/dist/routes/index.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"index.js","names":[],"sources":["../../src/routes/adminRoutes.tsx","../../src/routes/routes.tsx"],"sourcesContent":["/* eslint-disable @typescript-eslint/naming-convention */\nimport type { CaseDbApiPermission } from '@gen-epix/api-casedb';\nimport {\n CaseDbCommandName,\n CaseDbPermissionType,\n} from '@gen-epix/api-casedb';\nimport { ADMIN_PAGE_CATEGORY } from '@gen-epix/ui/models/admin';\nimport { createAdminRoutes as createCommonAdminRoutes } from '@gen-epix/ui/routes';\nimport { RouterErrorPage } from '@gen-epix/ui/pages/RouterErrorPage';\nimport type { MyNonIndexRouteObject } from '@gen-epix/ui/models/reactRouter';\nimport { t } from 'i18next';\nimport type { CommonDbApiPermission } from '@gen-epix/api-commondb';\n\nimport { CaseSetCategoryAdminPage } from '../pages/CaseSetCategoryAdminPage';\nimport { CaseSetStatusAdminPage } from '../pages/CaseSetStatusAdminPage';\nimport { CaseTypesAdminPage } from '../pages/CaseTypesAdminPage';\nimport { CaseTypeSetCategoriesAdminPage } from '../pages/CaseTypeSetCategoriesAdminPage';\nimport { CaseTypeSetsAdminPage } from '../pages/CaseTypeSetsAdminPage';\nimport { ColsAdminPage } from '../pages/ColsAdminPage';\nimport { ColSetsAdminPage } from '../pages/ColSetsAdminPage';\nimport { ConceptRelationsAdminPage } from '../pages/ConceptRelationsAdminPage';\nimport { ConceptsAdminPage } from '../pages/ConceptsAdminPage';\nimport { ConceptSetsAdminPage } from '../pages/ConceptSetsAdminPage';\nimport { DataCollectionsAdminPage } from '../pages/DataCollectionsAdminPage';\nimport { DataCollectionSetsAdminPage } from '../pages/DataCollectionSetsAdminPage';\nimport { DataCollectionVisualizationPage } from '../pages/DataCollectionVisualizationPage';\nimport { DimsAdminPage } from '../pages/DimsAdminPage';\nimport { DiseasesAdminPage } from '../pages/DiseasesAdminPage';\nimport { EtiologicalAgentsAdminPage } from '../pages/EtiologicalAgentsAdminPage';\nimport { EtiologiesAdminPage } from '../pages/EtiologiesAdminPage';\nimport { OrganizationAccessCasePoliciesAdminPage } from '../pages/OrganizationAccessCasePoliciesAdminPage';\nimport { OrganizationShareCasePoliciesAdminPage } from '../pages/OrganizationShareCasePoliciesAdminPage';\nimport { RefColsAdminPage } from '../pages/RefColsAdminPage';\nimport { RefDimsAdminPage } from '../pages/RefDimsAdminPage';\nimport { RegionRelationsAdminPage } from '../pages/RegionRelationsAdminPage';\nimport { RegionsAdminPage } from '../pages/RegionsAdminPage';\nimport { RegionSetsAdminPage } from '../pages/RegionSetsAdminPage';\nimport { RegionSetShapesAdminPage } from '../pages/RegionSetShapesAdminPage';\nimport { UserAccessCasePoliciesAdminPage } from '../pages/UserAccessCasePoliciesAdminPage';\nimport { UserEffectiveRightsAdminPage } from '../pages/UserEffectiveRightsAdminPage';\nimport { UserEffectiveRightsTesterAdminPage } from '../pages/UserEffectiveRightsTesterAdminPage';\nimport { UserShareCasePoliciesAdminPage } from '../pages/UserShareCasePoliciesAdminPage';\nimport { CaseDbUsersAdminPage } from '../pages/CaseDbUsersAdminPage';\n\n\ntype RoutePermission = CaseDbApiPermission | CommonDbApiPermission;\n\nconst createUserEffectiveRightsRoutes = (): MyNonIndexRouteObject<RoutePermission>[] => [\n {\n Component: UserEffectiveRightsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n requiredPermissions: [\n { command_name: CaseDbCommandName.ColSetMemberCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ColSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetMemberCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCategoryCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DataCollectionCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.OrganizationAccessCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.OrganizationShareCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.UserAccessCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.UserShareCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ColCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n title: t`Effective rights`,\n },\n path: '/management/users/:userId/effective-rights',\n },\n {\n Component: UserEffectiveRightsTesterAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n requiredPermissions: [\n { command_name: CaseDbCommandName.ColSetMemberCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ColSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetMemberCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCategoryCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DataCollectionCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.OrganizationAccessCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.OrganizationShareCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.UserAccessCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.UserShareCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ColCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n title: t`Effective rights test`,\n },\n path: '/management/users/:userId/effective-rights-tester',\n },\n];\n\nexport const createAdminRoutes = (): MyNonIndexRouteObject<RoutePermission>[] => [\n ...createCommonAdminRoutes<CaseDbApiPermission>({\n usersComponent: CaseDbUsersAdminPage,\n usersRouteChildren: createUserEffectiveRightsRoutes(),\n }),\n\n // ACCESS_RIGHTS\n\n {\n Component: DataCollectionsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.ACCESS_RIGHTS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.DataCollectionCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage data collections`,\n title: t`Data collections`,\n },\n path: '/management/data-collections',\n },\n {\n Component: DataCollectionSetsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.ACCESS_RIGHTS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.DataCollectionSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DataCollectionCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DataCollectionSetMemberCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage data collection sets`,\n title: t`Data collection sets`,\n },\n path: '/management/data-collection-sets',\n },\n {\n Component: ColSetsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.ACCESS_RIGHTS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.ColSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ColSetMemberCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RefColCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage column sets`,\n title: t`Column sets`,\n },\n path: '/management/col-sets',\n },\n {\n Component: OrganizationAccessCasePoliciesAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.ACCESS_RIGHTS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.OrganizationAccessCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.OrganizationCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DataCollectionCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ColSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage organization access case policies`,\n title: t`Organization access case policies`,\n },\n path: '/management/organization-access-case-policies',\n },\n {\n Component: OrganizationShareCasePoliciesAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.ACCESS_RIGHTS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.OrganizationShareCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.OrganizationCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DataCollectionCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage organization share case policies`,\n title: t`Organization share case policies`,\n },\n path: '/management/organization-share-case-policies',\n },\n {\n Component: UserAccessCasePoliciesAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.ACCESS_RIGHTS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.UserAccessCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.UserCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DataCollectionCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ColSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage user access case policies`,\n title: t`User access case policies`,\n },\n path: '/management/user-access-case-policies',\n },\n {\n Component: UserShareCasePoliciesAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.ACCESS_RIGHTS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.UserAccessCasePolicyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.UserCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DataCollectionCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage user share case policies`,\n title: t`User share case policies`,\n },\n path: '/management/user-share-case-policies',\n },\n\n\n // REFERENCE_DATA\n {\n children: [\n {\n Component: RefDimsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.RefDimCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage reference dimensions`,\n title: t`Reference dimensions`,\n },\n index: true,\n path: '/management/reference-dimensions',\n },\n {\n Component: RefColsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.RefColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RefDimCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ConceptSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RegionSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.GeneticDistanceProtocolCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage reference columns`,\n title: t`Reference columns`,\n },\n path: '/management/reference-dimensions/:refDimId/reference-columns',\n },\n ],\n errorElement: <RouterErrorPage />,\n handle: {\n requiredPermissions: [],\n requirePermissionForChildRoute: true,\n requiresUserProfile: true,\n title: t`Reference dimensions`,\n },\n path: '/management/reference-dimensions',\n },\n {\n children: [\n {\n Component: ConceptSetsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.ConceptSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage concept sets`,\n title: t`Concept Sets`,\n },\n index: true,\n path: '/management/concept-sets',\n },\n {\n Component: ConceptsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.ConceptCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage concepts`,\n title: t`Concepts`,\n },\n path: '/management/concept-sets/:conceptSetId/concepts',\n },\n ],\n errorElement: <RouterErrorPage />,\n handle: {\n requiredPermissions: [],\n requirePermissionForChildRoute: true,\n requiresUserProfile: true,\n title: t`Concept Sets`,\n },\n path: '/management/concept-sets',\n },\n {\n Component: ConceptRelationsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.ConceptRelationCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ConceptCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage concept relations`,\n title: t`Concept Relations`,\n },\n path: '/management/concept-relations',\n },\n {\n Component: DiseasesAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.DiseaseCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage diseases`,\n title: t`Diseases`,\n },\n path: '/management/diseases',\n },\n {\n Component: EtiologicalAgentsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.EtiologicalAgentCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage etiological agents`,\n title: t`Etiological agents`,\n },\n path: '/management/etiological-agents',\n },\n {\n Component: EtiologiesAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.EtiologyCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DiseaseCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.EtiologicalAgentCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage etiologies`,\n title: t`Etiologies`,\n },\n path: '/management/etiologies',\n },\n {\n Component: CaseSetStatusAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.CaseSetStatusCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage case set statuses`,\n title: t`Case set statuses`,\n },\n path: '/management/case-set-statuses',\n },\n {\n Component: CaseSetCategoryAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.CaseSetCategoryCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage case set categories`,\n title: t`Case set categories`,\n },\n path: '/management/case-set-categories',\n },\n {\n children: [\n {\n Component: CaseTypesAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DiseaseCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.EtiologicalAgentCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage case types`,\n title: t`Case types`,\n },\n index: true,\n path: '/management/case-types',\n },\n {\n children: [\n {\n Component: DimsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.DimCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RefDimCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage dimensions`,\n title: t`Dimensions`,\n },\n index: true,\n path: '/management/case-types/:caseTypeId/dimensions',\n },\n {\n Component: ColsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.ColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RefColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.TreeAlgorithmCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage columns`,\n title: t`Columns`,\n },\n path: '/management/case-types/:caseTypeId/dimensions/:dimId/columns',\n },\n ],\n errorElement: <RouterErrorPage />,\n handle: {\n requiredPermissions: [],\n requirePermissionForChildRoute: true,\n requiresUserProfile: true,\n title: t`Dimensions`,\n },\n path: '/management/case-types/:caseTypeId/dimensions',\n },\n ],\n errorElement: <RouterErrorPage />,\n handle: {\n requiredPermissions: [],\n requirePermissionForChildRoute: true,\n requiresUserProfile: true,\n title: t`Case types`,\n },\n path: '/management/case-types',\n },\n {\n Component: CaseTypeSetsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.CaseTypeSetMemberCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCategoryCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage case types sets`,\n title: t`Case types sets`,\n },\n path: '/management/case-type-sets',\n },\n {\n Component: CaseTypeSetCategoriesAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.CaseTypeSetCategoryCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage case types set categories`,\n title: t`Case types set categories`,\n },\n path: '/management/case-type-set-categories',\n },\n\n {\n children: [\n {\n Component: RegionSetsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.RegionSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage region sets`,\n title: t`Region sets`,\n },\n index: true,\n path: '/management/region-sets',\n },\n {\n Component: RegionsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.RegionCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RegionSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage regions`,\n title: t`Regions`,\n },\n path: '/management/region-sets/:regionSetId/regions',\n },\n {\n Component: RegionSetShapesAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.RegionSetShapeCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage region set shapes`,\n title: t`Region set shapes`,\n },\n path: '/management/region-sets/:regionSetId/shapes',\n },\n ],\n errorElement: <RouterErrorPage />,\n handle: {\n requiredPermissions: [],\n requirePermissionForChildRoute: true,\n requiresUserProfile: true,\n title: t`Region sets`,\n },\n path: '/management/region-sets',\n },\n {\n Component: RegionRelationsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.REFERENCE_DATA,\n requiredPermissions: [\n { command_name: CaseDbCommandName.RegionRelationCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RegionCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage region relations`,\n title: t`Region Relations`,\n },\n path: '/management/region-relations',\n },\n\n // HELPERS\n {\n Component: RefColsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.HELPERS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.RefColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RefDimCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ConceptSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RegionSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.GeneticDistanceProtocolCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`View all reference columns`,\n title: t`Reference columns (all)`,\n },\n path: '/management/reference-columns',\n },\n {\n children: [\n {\n Component: DimsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.HELPERS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.DimCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RefDimCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`View all dimensions`,\n title: t`Dimensions (all)`,\n },\n index: true,\n path: '/management/dimensions',\n },\n {\n Component: ColsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.HELPERS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.ColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RefColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.TreeAlgorithmCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`Manage columns`,\n title: t`Columns`,\n },\n path: '/management/dimensions/:dimId/columns',\n },\n ],\n errorElement: <RouterErrorPage />,\n handle: {\n requiredPermissions: [],\n requirePermissionForChildRoute: true,\n requiresUserProfile: true,\n title: t`Dimensions (all)`,\n },\n path: '/management/dimensions',\n },\n {\n Component: ColsAdminPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.HELPERS,\n requiredPermissions: [\n { command_name: CaseDbCommandName.ColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RefColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.TreeAlgorithmCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n ],\n requiresUserProfile: true,\n subTitle: t`View all columns`,\n title: t`Columns (all)`,\n },\n path: '/management/columns',\n },\n {\n Component: DataCollectionVisualizationPage,\n errorElement: <RouterErrorPage />,\n handle: {\n category: ADMIN_PAGE_CATEGORY.HELPERS,\n requiredPermissions: [],\n requiresUserProfile: true,\n subTitle: t`View data collection visualization`,\n title: t`Data collection visualization`,\n },\n path: '/management/data-collection-visualization-page',\n },\n];\n","/* eslint-disable @typescript-eslint/naming-convention */\nimport type { CaseDbApiPermission } from '@gen-epix/api-casedb';\nimport {\n CaseDbCommandName,\n CaseDbPermissionType,\n} from '@gen-epix/api-casedb';\nimport { t } from 'i18next';\nimport type { CommonDbApiPermission } from '@gen-epix/api-commondb';\nimport { createRoutes as createCommonRoutes } from '@gen-epix/ui/routes';\nimport { RouterErrorPage } from '@gen-epix/ui/pages/RouterErrorPage';\nimport type { MyNonIndexRouteObject } from '@gen-epix/ui/models/reactRouter';\n\nimport { CasesDetailPage } from '../pages/CasesDetailPage';\nimport { CasesPage } from '../pages/CasesPage';\nimport { EventsDetailPage } from '../pages/EventsDetailPage';\nimport { EventsPage } from '../pages/EventsPage';\nimport { TrendsPage } from '../pages/TrendsPage';\nimport { UploadPage } from '../pages/UploadPage';\n\nimport { createAdminRoutes } from './adminRoutes';\n\ntype RoutePermission = CaseDbApiPermission | CommonDbApiPermission;\n\nconst dashboardPermissions: RoutePermission[] = [\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ConceptSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.OrganizationCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RegionSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RetrieveCasesByIdCommand, permission_type: CaseDbPermissionType.EXECUTE },\n { command_name: CaseDbCommandName.RetrieveCasesByQueryCommand, permission_type: CaseDbPermissionType.EXECUTE },\n { command_name: CaseDbCommandName.RetrievePhylogeneticTreeByCasesCommand, permission_type: CaseDbPermissionType.EXECUTE },\n];\n\n\nexport const createRoutes = (\n adminRoutes: MyNonIndexRouteObject<RoutePermission>[] = createAdminRoutes(),\n): MyNonIndexRouteObject<RoutePermission>[] => {\n const rootChildren: MyNonIndexRouteObject<RoutePermission>[] = [\n {\n children: [\n {\n Component: CasesPage,\n errorElement: <RouterErrorPage />,\n handle: {\n hidden: false,\n requiredPermissions: [\n { command_name: CaseDbCommandName.CaseTypeSetCategoryCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetMemberCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RetrieveCaseTypeStatsCommand, permission_type: CaseDbPermissionType.EXECUTE },\n ],\n requiresUserProfile: true,\n title: t`Cases`,\n },\n index: true,\n path: '/cases',\n },\n {\n Component: CasesDetailPage,\n errorElement: <RouterErrorPage />,\n handle: {\n hidden: false,\n requiredPermissions: [\n ...dashboardPermissions,\n ],\n requiresUserProfile: true,\n title: t`Case type`,\n },\n path: '/cases/:slug/:caseTypeId',\n },\n ],\n errorElement: <RouterErrorPage />,\n handle: {\n hidden: false,\n requiredPermissions: [],\n requiresUserProfile: true,\n title: t`Cases`,\n },\n path: '/cases',\n },\n {\n children: [\n {\n Component: EventsPage,\n errorElement: <RouterErrorPage />,\n handle: {\n hidden: false,\n requiredPermissions: [\n { command_name: CaseDbCommandName.CaseTypeSetCategoryCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseSetStatusCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseSetCategoryCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.CaseTypeSetMemberCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RetrieveCaseSetStatsCommand, permission_type: CaseDbPermissionType.EXECUTE },\n ],\n requiresUserProfile: true,\n title: t`Events`,\n },\n index: true,\n },\n {\n Component: EventsDetailPage,\n errorElement: <RouterErrorPage />,\n handle: {\n hidden: false,\n requiredPermissions: [\n { command_name: CaseDbCommandName.CaseSetCrudCommand, permission_type: CaseDbPermissionType.READ },\n ...dashboardPermissions,\n ],\n requiresUserProfile: true,\n title: t`Event`,\n },\n path: '/events/:slug/:caseSetId',\n },\n ],\n errorElement: <RouterErrorPage />,\n handle: {\n hidden: false,\n requiredPermissions: [],\n requiresUserProfile: true,\n title: t`Events`,\n },\n path: '/events',\n },\n {\n Component: TrendsPage,\n errorElement: <RouterErrorPage />,\n handle: {\n disabled: true,\n requiredPermissions: [],\n requiresUserProfile: true,\n title: t`Trends`,\n },\n path: '/trends',\n },\n {\n Component: UploadPage,\n errorElement: <RouterErrorPage />,\n handle: {\n requiredPermissions: [\n { command_name: CaseDbCommandName.CaseTypeCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.DataCollectionCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.ColCrudCommand, permission_type: CaseDbPermissionType.READ },\n { command_name: CaseDbCommandName.RetrieveProtocolsCommand, permission_type: CaseDbPermissionType.EXECUTE },\n { command_name: CaseDbCommandName.CreateFileForReadSetCommand, permission_type: CaseDbPermissionType.EXECUTE },\n { command_name: CaseDbCommandName.CreateFileForSeqCommand, permission_type: CaseDbPermissionType.EXECUTE },\n { command_name: CaseDbCommandName.UploadCasesCommand, permission_type: CaseDbPermissionType.EXECUTE },\n ],\n requiresUserProfile: true,\n title: t`Upload`,\n },\n path: '/upload',\n },\n ];\n\n return createCommonRoutes<CaseDbApiPermission>({\n adminRoutes,\n rootChildren,\n 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package/dist/routes/routes.d.ts ADDED Viewed

@@ -0,0 +1,6 @@
+import { CaseDbApiPermission } from '@gen-epix/api-casedb';
+import { CommonDbApiPermission } from '@gen-epix/api-commondb';
+import { MyNonIndexRouteObject } from '@gen-epix/ui/models/reactRouter';
+type RoutePermission = CaseDbApiPermission | CommonDbApiPermission;
+export declare const createRoutes: (adminRoutes?: MyNonIndexRouteObject<RoutePermission>[]) => MyNonIndexRouteObject<RoutePermission>[];
+export {};

package/dist/setup/setup.d.ts ADDED Viewed

	@@ -0,0 +1 @@
1	+ export declare const setupCaseDb: () => void;

package/dist/setup/setup.js ADDED Viewed

@@ -0,0 +1,28 @@
+import { CASEDB_QUERY_DEPENDENCIES as e } from "../constants/query.js";
+import { createAdminRoutes as t, createRoutes as n } from "../routes/index.js";
+import { HomePage as r } from "../pages/HomePage/index.js";
+import { CaseDbAbacApi as i, CaseDbAuthApi as a, CaseDbBaseAPI as o, CaseDbOrganizationApi as s, CaseDbSystemApi as c } from "@gen-epix/api-casedb";
+import { QueryClientService as l } from "@gen-epix/ui/classes/services/QueryClientService";
+import { COMMON_QUERY_DEPENDENCIES as u } from "@gen-epix/ui/constants/query";
+import { RouterService as d } from "@gen-epix/ui/classes/services/RouterService";
+import { ApiService as f } from "@gen-epix/ui/classes/services/ApiService";
+import { setupUi as p } from "@gen-epix/ui/setup/setup";
+//#region src/setup/setup.ts
+var m = () => {
+	let m = t(), h = n(m);
+	d.getInstance().initialize({
+		adminRoutes: m,
+		homePageComponent: r,
+		routes: h
+	}), l.getInstance().initialize({ queryKeyDependencies: [u, e] }), f.getInstance().initialize({
+		abacApi: i.getInstance(),
+		authApi: a.getInstance(),
+		baseApi: o,
+		organizationApi: s.getInstance(),
+		systemApi: c.getInstance()
+	}), p();
+};
+//#endregion
+export { m as setupCaseDb };
+//# sourceMappingURL=setup.js.map

package/dist/setup/setup.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"setup.js","names":[],"sources":["../../src/setup/setup.ts"],"sourcesContent":["import type { COMMON_QUERY_KEY } from '@gen-epix/ui/constants/query';\nimport type { MyNonIndexRouteObject } from '@gen-epix/ui/models/reactRouter';\nimport { ApiService } from '@gen-epix/ui/classes/services/ApiService';\nimport { COMMON_QUERY_DEPENDENCIES } from '@gen-epix/ui/constants/query';\nimport { QueryClientService } from '@gen-epix/ui/classes/services/QueryClientService';\nimport { RouterService } from '@gen-epix/ui/classes/services/RouterService';\nimport { setupUi } from '@gen-epix/ui/setup/setup';\nimport {\n CaseDbAbacApi,\n CaseDbAuthApi,\n CaseDbBaseAPI,\n CaseDbOrganizationApi,\n CaseDbSystemApi,\n} from '@gen-epix/api-casedb';\nimport type { CommonDbOrganizationApi } from '@gen-epix/api-commondb';\n\nimport type { CASEDB_QUERY_KEY } from '../constants/query';\nimport { CASEDB_QUERY_DEPENDENCIES } from '../constants/query';\nimport { HomePage } from '../pages/HomePage';\nimport {\n createAdminRoutes,\n createRoutes,\n} from '../routes';\n\nexport const setupCaseDb = () => {\n const adminRoutes = createAdminRoutes();\n const routes = createRoutes(adminRoutes);\n\n RouterService.getInstance().initialize({\n adminRoutes: adminRoutes as MyNonIndexRouteObject[],\n homePageComponent: HomePage,\n routes: routes as MyNonIndexRouteObject[],\n });\n QueryClientService.getInstance<CASEDB_QUERY_KEY & COMMON_QUERY_KEY>().initialize({\n queryKeyDependencies: [COMMON_QUERY_DEPENDENCIES, CASEDB_QUERY_DEPENDENCIES],\n });\n ApiService.getInstance().initialize({\n abacApi: CaseDbAbacApi.getInstance(),\n authApi: CaseDbAuthApi.getInstance(),\n baseApi: CaseDbBaseAPI,\n organizationApi: CaseDbOrganizationApi.getInstance() as CommonDbOrganizationApi,\n systemApi: CaseDbSystemApi.getInstance(),\n });\n setupUi();\n};\n"],"mappings":";;;;;;;;;;AAwBA,IAAa,UAAoB;CAC/B,IAAM,IAAc,EAAkB,GAChC,IAAS,EAAa,CAAW;CAiBvC,AAfA,EAAc,YAAY,CAAC,CAAC,WAAW;EACxB;EACb,mBAAmB;EACX;CACV,CAAC,GACD,EAAmB,YAAiD,CAAC,CAAC,WAAW,EAC/E,sBAAsB,CAAC,GAA2B,CAAyB,EAC7E,CAAC,GACD,EAAW,YAAY,CAAC,CAAC,WAAW;EAClC,SAAS,EAAc,YAAY;EACnC,SAAS,EAAc,YAAY;EACnC,SAAS;EACT,iBAAiB,EAAsB,YAAY;EACnD,WAAW,EAAgB,YAAY;CACzC,CAAC,GACD,EAAQ;AACV"}

package/dist/stores/dashboardStore/dashboardStore.d.ts ADDED Viewed

@@ -0,0 +1,80 @@
+import { CaseDbCase, CaseDbCol, CaseDbCompleteCaseType, CaseDbPhylogeneticTree } from '@gen-epix/api-casedb';
+import { CreateTableStoreInitialStateKwArgs, CreateTableStoreKwArgs, TableStoreActions, TableStoreState } from '@gen-epix/ui/stores/tableStore';
+import { TreeNode } from '@gen-epix/ui-phylogenetic-tree/models/tree';
+import { FindSimilarCasesResult } from '../../models/caseDb';
+import { StratifiableColumn, Stratification, STRATIFICATION_MODE } from '../../models/stratification';
+export interface CreateDashboardStoreInitialStateKwArgs extends CreateTableStoreInitialStateKwArgs<CaseDbCase, CaseDbCompleteCaseType> {
+    caseSetId: string;
+    completeCaseType: CaseDbCompleteCaseType;
+}
+export type CreateDashboardStoreKwArgs = {
+    caseSetId: string;
+    completeCaseType: CaseDbCompleteCaseType;
+} & CreateTableStoreKwArgs<CaseDbCase, CaseDbCompleteCaseType>;
+export type DashboardStore = DashboardStoreActions & DashboardStoreState;
+interface DashboardStoreActions extends TableStoreActions<CaseDbCase, CaseDbCompleteCaseType> {
+    addTreeFilter: (nodeId: string) => Promise<void>;
+    destroy: () => void;
+    expandZone: (zone: string) => void;
+    getWidgetData: <TData>(widgetName: string) => TData;
+    getWidgetDataPersistable: <TData>(widgetName: string) => TData;
+    mutateCachedCase: (caseId: string, item: CaseDbCase) => void;
+    reloadFieldStratification: () => void;
+    reloadStratifyableColumns: () => void;
+    reloadTree: () => void;
+    removeTreeFilter: () => Promise<void>;
+    resetTreeAddresses: () => void;
+    setFindSimilarCasesResults: (findSimilarCasesResults: FindSimilarCasesResult[]) => Promise<void>;
+    setNumVisibleAttributesInSummary: (numVisibleAttributesInSummary: number) => void;
+    setPhylogeneticTreeResponse: (phylogeneticTree: CaseDbPhylogeneticTree) => void;
+    stratify: (mode: STRATIFICATION_MODE, col?: CaseDbCol) => void;
+    treeFilterStepOut: () => Promise<void>;
+    updateWidgetData: <TData, TPartialData = Partial<TData>>(widgetName: string, data: TPartialData) => void;
+    updateWidgetDataPersistable: <TData, TPartialData = Partial<TData>>(widgetName: string, data: TPartialData) => void;
+}
+interface DashboardStoreState extends TableStoreState<CaseDbCase, CaseDbCompleteCaseType> {
+    caseSetId: string;
+    completeCaseType: CaseDbCompleteCaseType;
+    expandedZone: string;
+    findSimilarCasesResults: FindSimilarCasesResult[];
+    isMaxResultsExceeded: boolean;
+    isMaxResultsExceededDismissed: boolean;
+    newick: string;
+    numVisibleAttributesInSummary: number;
+    stratification: Stratification;
+    stratifyableColumns: StratifiableColumn[];
+    tree: TreeNode;
+    treeAddresses: {
+        [key: string]: {
+            addresses: {
+                [key: string]: string;
+            };
+            algorithmCode: string;
+        };
+    };
+    treeResponse: TreeNode;
+    widgetData: {
+        [key: string]: {
+            [key: string]: unknown;
+        };
+    };
+    widgetDataPersistable: {
+        [key: string]: {
+            [key: string]: unknown;
+        };
+    };
+}
+export declare const createDashboardStore: (kwArgs: CreateDashboardStoreKwArgs) => Omit<import('zustand').StoreApi<DashboardStore>, "persist" | "setState"> & {
+    setState(partial: DashboardStore | Partial<DashboardStore> | ((state: DashboardStore) => DashboardStore | Partial<DashboardStore>), replace?: false): unknown;
+    setState(state: DashboardStore | ((state: DashboardStore) => DashboardStore), replace: true): unknown;
+    persist: {
+        setOptions: (options: Partial<import('zustand/middleware').PersistOptions<DashboardStore, DashboardStore, unknown>>) => void;
+        clearStorage: () => void;
+        rehydrate: () => Promise<void> | void;
+        hasHydrated: () => boolean;
+        onHydrate: (fn: (state: DashboardStore) => void) => () => void;
+        onFinishHydration: (fn: (state: DashboardStore) => void) => () => void;
+        getOptions: () => Partial<import('zustand/middleware').PersistOptions<DashboardStore, DashboardStore, unknown>>;
+    };
+};
+export {};

package/dist/stores/dashboardStore/dashboardStoreContext.d.ts ADDED Viewed

@@ -0,0 +1,3 @@
+import { StoreApi } from 'zustand';
+import { DashboardStore } from './dashboardStore';
+export declare const DashboardStoreContext: import('react').Context<StoreApi<DashboardStore>>;

package/dist/stores/dashboardStore/index.d.ts ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ export * from './dashboardStore';
2	+ export * from './dashboardStoreContext';

package/dist/stores/dashboardStore/index.js ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ import { n as e, t } from "../../_chunks/dashboardStore.js";
2	+ export { t as DashboardStoreContext, e as createDashboardStore };

package/dist/stores/uploadStore/index.d.ts ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ export * from './uploadStore';
2	+ export * from './uploadStoreContext';

package/dist/stores/uploadStore/index.js ADDED Viewed

@@ -0,0 +1,185 @@
+import { t as e } from "../../_chunks/UploadUtil.js";
+import { CASEDB_QUERY_KEY as t } from "../../constants/query.js";
+import { t as n } from "../../_chunks/vanilla.js";
+import { UPLOAD_STEP as r } from "../../models/upload.js";
+import { t as i } from "i18next";
+import { QueryClientService as a } from "@gen-epix/ui/classes/services/QueryClientService";
+import { StringUtil as o } from "@gen-epix/ui-core/utils/StringUtil";
+import { NotificationService as s } from "@gen-epix/ui/classes/services/NotificationService";
+import { createContext as c } from "react";
+//#region src/stores/uploadStore/uploadStore.ts
+var l = [
+	r.SELECT_FILE,
+	r.MAP_COLUMNS,
+	r.PREVIEW,
+	r.SELECT_SEQUENCE_FILES,
+	r.MAP_SEQUENCES,
+	r.CREATE_CASES
+], u = [r.PREVIEW, r.CREATE_CASES], d = (e) => ({
+	activeStep: e.stepOrder[0],
+	assemblyProtocolId: null,
+	caseRightsColMap: e.caseRightsColMap ?? {},
+	casesForVerificationFromSourceData: e.casesForVerificationFromSourceData ?? [],
+	caseTypeId: null,
+	cols: [],
+	completeCaseType: e.completeCaseType ?? null,
+	createdInDataCollectionId: null,
+	createdInDataCollectionOptions: [],
+	dataCollectionOptions: [],
+	fileList: null,
+	fileName: null,
+	fileParsingError: null,
+	goBackFromFirstStepCallback: e.goBackFromFirstStepCallback ?? null,
+	goBackFromFirstStepLabel: e.goBackFromFirstStepLabel ?? null,
+	initError: null,
+	isInitLoading: !0,
+	mappedColumns: [],
+	onUploadComplete: e.onUploadComplete ?? null,
+	rawData: null,
+	sampleIdColId: null,
+	selectedIdsForUpload: [],
+	sequenceFilesDataTransfer: new DataTransfer(),
+	sequenceMapping: {},
+	sequencingProtocolId: null,
+	sheet: null,
+	sheetOptions: [],
+	shouldResetColumnMapping: !1,
+	shouldResetSequenceMapping: !1,
+	stepOrder: e.stepOrder,
+	uploadCompleteButtonCallback: e.uploadCompleteButtonCallback ?? null,
+	uploadCompleteButtonLabel: e.uploadCompleteButtonLabel ?? null,
+	validateCasesQueryKey: a.getInstance().getGenericKey(t.VALIDATE_CASES, o.createUuid()),
+	validatedCases: []
+}), f = (t) => {
+	let o = { ...t }, c = d(o), l = t.stepOrder;
+	return n()((t, n) => ({
+		...c,
+		destroy: async () => {
+			let { invalidateCaseValidationQuery: e } = n();
+			await e();
+		},
+		findNextStep: (e) => {
+			let t = l.indexOf(e);
+			return t === -1 || t === l.length - 1 ? null : l[t + 1];
+		},
+		findPreviousStep: (e) => {
+			let t = l.indexOf(e);
+			return t <= 0 ? null : l[t - 1];
+		},
+		goToNextStep: async () => {
+			let { activeStep: a, completeCaseType: o, createdInDataCollectionId: c, mappedColumns: l, rawData: u, sequenceFilesDataTransfer: d, sequenceMapping: f, setMappedColumns: p, shouldResetColumnMapping: m, shouldResetSequenceMapping: h, validatedCases: g } = n(), _ = n().findNextStep(a);
+			_ === r.MAP_COLUMNS && (m && l.length > 0 && s.getInstance().showNotification({
+				isLoading: !1,
+				message: i`Column mappings have been reset due to changes in the selected case type or file.`,
+				severity: "info"
+			}), (m && l.length > 0 || l.length === 0) && await p(e.getInitialMappedColumns(o, u))), _ === r.PREVIEW && t({ casesForVerificationFromSourceData: e.getCasesForUpload({
+				caseTypeId: o.id,
+				createdInDataCollectionId: c,
+				mappedColumns: l,
+				rawData: u
+			}) }), _ === r.MAP_SEQUENCES && (h && Object.keys(f).length > 0 && s.getInstance().showNotification({
+				isLoading: !1,
+				message: i`Sequence mappings have been reset due to changes in the selected uploaded files.`,
+				severity: "info"
+			}), (h && f || !f) && t({ sequenceMapping: e.getEpiUploadSequenceMapping(o, g, d) }), e.getSequenceMappingStats(n().sequenceMapping, d).numberOfFilesToMap === 0 && (_ = n().findNextStep(_))), _ !== null && t({
+				activeStep: _,
+				shouldResetColumnMapping: !1,
+				shouldResetSequenceMapping: !1
+			});
+		},
+		goToPreviousStep: () => {
+			let { activeStep: i, sequenceFilesDataTransfer: a, sequenceMapping: o } = n(), s = n().findPreviousStep(i);
+			s === r.MAP_SEQUENCES && e.getSequenceMappingStats(o, a).numberOfFilesToMap === 0 && (s = n().findPreviousStep(s)), s !== null && t({ activeStep: s });
+		},
+		invalidateCaseValidationQuery: async () => {
+			let { validateCasesQueryKey: e } = n();
+			await a.getInstance().invalidateQueryKeys([e]), a.getInstance().removeQueries([e]);
+		},
+		reset: async () => {
+			let { invalidateCaseValidationQuery: e } = n();
+			await e(), t(d(o));
+		},
+		setCaseTypeId: (e) => {
+			t({ caseTypeId: e });
+		},
+		setCols: (e) => {
+			t({ cols: e });
+		},
+		setCompleteCaseType: async (e) => {
+			let { completeCaseType: r, createdInDataCollectionId: i, dataCollectionOptions: a, invalidateCaseValidationQuery: o } = n();
+			if (t({ completeCaseType: e }), e && e.id !== r?.id) {
+				await o(), t({ shouldResetColumnMapping: !0 });
+				let n = a.filter((t) => {
+					let n = t.value;
+					return e.case_type_access_abacs[n]?.is_private && e.case_type_access_abacs[n]?.add_case_set;
+				});
+				t({ createdInDataCollectionOptions: n }), n.length === 1 && t({ createdInDataCollectionId: n[0].value }), i && (n.some((e) => e.value === i) || t({ createdInDataCollectionId: null }));
+			}
+		},
+		setCreatedInDataCollectionId: (e) => {
+			t({ createdInDataCollectionId: e });
+		},
+		setDataCollectionOptions: (e) => {
+			t({ dataCollectionOptions: e });
+		},
+		setFileList: async (r) => {
+			let { setRawData: a, setSheet: o, setSheetOptions: s } = n(), c = r?.length > 0 ? r[0] : null;
+			if (t({
+				fileName: c?.name ?? null,
+				fileParsingError: null,
+				rawData: null,
+				sheet: null
+			}), !c) {
+				await o(null), await a(null), t({ fileList: null });
+				return;
+			}
+			t({ fileList: r });
+			try {
+				e.isXlsxFile(c.name) || await a(await e.readRawData(r)), await s(await e.getSheetNameOptions(r));
+			} catch (e) {
+				console.log(e), await o(null), await s([]), t({
+					fileList: null,
+					fileParsingError: i("Error reading file")
+				});
+			}
+		},
+		setMappedColumns: async (e) => {
+			let { invalidateCaseValidationQuery: r } = n();
+			await r(), t({ mappedColumns: e });
+		},
+		setRawData: async (r) => {
+			let { cols: i, invalidateCaseValidationQuery: a, rawData: o, setCaseTypeId: s } = n();
+			if (JSON.stringify(o) !== JSON.stringify(r) && (t({ shouldResetColumnMapping: !0 }), await a()), t({ rawData: r }), !r || r.length === 0) return;
+			let c = e.getCaseTypeFromColumnLabels(i, r[0]);
+			c && s(c.id);
+		},
+		setSequenceFilesDataTransfer: (e) => {
+			let { sequenceFilesDataTransfer: r, sequenceMapping: i } = n();
+			e !== r && (t({ sequenceFilesDataTransfer: e }), i && t({ shouldResetSequenceMapping: !0 }));
+		},
+		setSequenceMapping: (e) => {
+			t({ sequenceMapping: e });
+		},
+		setSheet: async (r) => {
+			let { fileList: a, setRawData: o } = n();
+			if (t({
+				fileParsingError: null,
+				rawData: null,
+				sheet: r
+			}), r) try {
+				await o(await e.readRawData(a, r));
+			} catch (e) {
+				console.error("Error reading sheet", e), t({ sheet: null }), t({ fileParsingError: i("Error reading sheet") }), await o(null);
+				return;
+			}
+		},
+		setSheetOptions: async (e) => {
+			let { setSheet: r } = n();
+			t({ sheetOptions: e }), e.length === 1 && await r(e[0].value);
+		}
+	}));
+}, p = c(null);
+//#endregion
+export { u as STEP_ORDER_BULK_EDIT, l as STEP_ORDER_UPLOAD, p as UploadStoreContext, f as createUploadStore };
+//# sourceMappingURL=index.js.map

package/dist/stores/uploadStore/index.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"index.js","names":[],"sources":["../../../src/stores/uploadStore/uploadStore.ts","../../../src/stores/uploadStore/uploadStoreContext.tsx"],"sourcesContent":["import { createStore } from 'zustand';\nimport { t } from 'i18next';\nimport type {\n CaseDbCaseBatchUploadResult,\n CaseDbCaseForUpload,\n CaseDbCaseUploadResult,\n CaseDbCol,\n CaseDbCompleteCaseType,\n} from '@gen-epix/api-casedb';\nimport { NotificationService } from '@gen-epix/ui/classes/services/NotificationService';\nimport { QueryClientService } from '@gen-epix/ui/classes/services/QueryClientService';\nimport { StringUtil } from '@gen-epix/ui-core/utils/StringUtil';\nimport type {\n AutoCompleteOption,\n OptionBase,\n} from '@gen-epix/ui-form/models/form';\n\nimport type {\n UploadMappedColumn,\n UploadSequenceMapping,\n} from '../../models/upload';\nimport { UPLOAD_STEP } from '../../models/upload';\nimport { UploadUtil } from '../../utils/UploadUtil';\nimport { CASEDB_QUERY_KEY } from '../../constants/query';\n\nexport const STEP_ORDER_UPLOAD = [\n UPLOAD_STEP.SELECT_FILE,\n UPLOAD_STEP.MAP_COLUMNS,\n UPLOAD_STEP.PREVIEW,\n UPLOAD_STEP.SELECT_SEQUENCE_FILES,\n UPLOAD_STEP.MAP_SEQUENCES,\n UPLOAD_STEP.CREATE_CASES,\n];\n\nexport const STEP_ORDER_BULK_EDIT = [\n UPLOAD_STEP.PREVIEW,\n UPLOAD_STEP.CREATE_CASES,\n];\n\nexport interface CreateUploadStoreInitialStateKwArg {\n caseRightsColMap?: { [colId: string]: string[] };\n casesForVerificationFromSourceData?: CaseDbCaseForUpload[];\n completeCaseType?: CaseDbCompleteCaseType;\n goBackFromFirstStepCallback?: () => void;\n goBackFromFirstStepLabel?: string;\n onUploadComplete?: (result: CaseDbCaseBatchUploadResult) => Promise<void> | void;\n stepOrder: UPLOAD_STEP[];\n uploadCompleteButtonCallback?: () => void;\n uploadCompleteButtonLabel?: string;\n}\n\nexport type CreateUploadStoreKwArgs = CreateUploadStoreInitialStateKwArg;\n\nexport type UploadStore = UploadStoreActions & UploadStoreState;\nexport interface UploadStoreActions {\n destroy: () => Promise<void>;\n findNextStep: (currentStep: UPLOAD_STEP) => UPLOAD_STEP;\n findPreviousStep: (currentStep: UPLOAD_STEP) => UPLOAD_STEP;\n goToNextStep: () => Promise<void>;\n goToPreviousStep: () => void;\n invalidateCaseValidationQuery: () => Promise<void>;\n reset: () => Promise<void>;\n setCaseTypeId: (caseTypeId: string) => void;\n setCols: (cols: CaseDbCol[]) => void;\n setCompleteCaseType: (completeCaseType: CaseDbCompleteCaseType) => void;\n setCreatedInDataCollectionId: (createdInDataCollectionId: string) => void;\n setDataCollectionOptions: (options: OptionBase<string>[]) => void;\n setFileList: (fileList: FileList) => Promise<void>;\n\n setMappedColumns: (mappedColumns: UploadMappedColumn[]) => Promise<void>;\n setRawData: (rawData: string[][]) => Promise<void>;\n setSequenceFilesDataTransfer: (dataTransfer: DataTransfer) => void;\n setSequenceMapping: (sequenceMapping: UploadSequenceMapping) => void;\n setSheet: (sheet: string) => Promise<void>;\n setSheetOptions: (sheetOptions: AutoCompleteOption<string>[]) => Promise<void>;\n}\n\nexport interface UploadStoreState {\n activeStep: UPLOAD_STEP;\n assemblyProtocolId: string;\n caseRightsColMap: { [colId: string]: string[] };\n casesForVerificationFromSourceData: CaseDbCaseForUpload[];\n caseTypeId: string;\n cols: CaseDbCol[];\n completeCaseType: CaseDbCompleteCaseType;\n createdInDataCollectionId: string;\n createdInDataCollectionOptions: AutoCompleteOption<string>[];\n dataCollectionOptions: OptionBase<string>[];\n fileList: FileList;\n fileName: string;\n fileParsingError: string;\n goBackFromFirstStepCallback: () => void;\n goBackFromFirstStepLabel: string;\n initError: unknown;\n isInitLoading: boolean;\n mappedColumns: UploadMappedColumn[];\n onUploadComplete: (result: CaseDbCaseBatchUploadResult) => Promise<void> | void;\n rawData: string[][];\n sampleIdColId: string;\n selectedIdsForUpload: string[];\n sequenceFilesDataTransfer: DataTransfer;\n sequenceMapping: UploadSequenceMapping;\n sequencingProtocolId: string;\n sheet: string;\n sheetOptions: AutoCompleteOption<string>[];\n shouldResetColumnMapping: boolean;\n shouldResetSequenceMapping: boolean;\n stepOrder: UPLOAD_STEP[];\n uploadCompleteButtonCallback: () => void;\n uploadCompleteButtonLabel: string;\n validateCasesQueryKey: string[];\n validatedCases: CaseDbCaseUploadResult[];\n}\n\n\nconst createEpiUploadStoreInitialState: (kwArgs: CreateUploadStoreKwArgs) => UploadStoreState = (kwArgs) => ({\n activeStep: kwArgs.stepOrder[0],\n assemblyProtocolId: null,\n caseRightsColMap: kwArgs.caseRightsColMap ?? {},\n casesForVerificationFromSourceData: kwArgs.casesForVerificationFromSourceData ?? [],\n caseTypeId: null,\n cols: [],\n completeCaseType: kwArgs.completeCaseType ?? null,\n createdInDataCollectionId: null,\n createdInDataCollectionOptions: [],\n dataCollectionOptions: [],\n fileList: null,\n fileName: null,\n fileParsingError: null,\n goBackFromFirstStepCallback: kwArgs.goBackFromFirstStepCallback ?? null,\n goBackFromFirstStepLabel: kwArgs.goBackFromFirstStepLabel ?? null,\n initError: null,\n isInitLoading: true,\n mappedColumns: [],\n onUploadComplete: kwArgs.onUploadComplete ?? null,\n rawData: null,\n sampleIdColId: null,\n selectedIdsForUpload: [],\n sequenceFilesDataTransfer: new DataTransfer(),\n sequenceMapping: {},\n sequencingProtocolId: null,\n sheet: null,\n sheetOptions: [],\n shouldResetColumnMapping: false,\n shouldResetSequenceMapping: false,\n stepOrder: kwArgs.stepOrder,\n uploadCompleteButtonCallback: kwArgs.uploadCompleteButtonCallback ?? null,\n uploadCompleteButtonLabel: kwArgs.uploadCompleteButtonLabel ?? null,\n validateCasesQueryKey: QueryClientService.getInstance().getGenericKey(CASEDB_QUERY_KEY.VALIDATE_CASES, StringUtil.createUuid()),\n validatedCases: [],\n});\n\nexport const createUploadStore = (kwArgs: CreateUploadStoreKwArgs) => {\n const initialStateParams = { ...kwArgs };\n const initialState = createEpiUploadStoreInitialState(initialStateParams);\n const STEP_ORDER = kwArgs.stepOrder;\n\n return createStore<UploadStore>()((set, get) => {\n return {\n ...initialState,\n destroy: async () => {\n const { invalidateCaseValidationQuery } = get();\n await invalidateCaseValidationQuery();\n },\n\n findNextStep: (currentStep: UPLOAD_STEP): UPLOAD_STEP => {\n const currentIndex = STEP_ORDER.indexOf(currentStep);\n if (currentIndex === -1 || currentIndex === STEP_ORDER.length - 1) {\n return null;\n }\n return STEP_ORDER[currentIndex + 1];\n },\n\n findPreviousStep: (currentStep: UPLOAD_STEP): UPLOAD_STEP => {\n const currentIndex = STEP_ORDER.indexOf(currentStep);\n if (currentIndex <= 0) {\n return null;\n }\n return STEP_ORDER[currentIndex - 1];\n },\n\n goToNextStep: async () => {\n const { activeStep, completeCaseType, createdInDataCollectionId, mappedColumns, rawData, sequenceFilesDataTransfer, sequenceMapping, setMappedColumns, shouldResetColumnMapping, shouldResetSequenceMapping, validatedCases } = get();\n\n let nextStep = get().findNextStep(activeStep);\n\n if (nextStep === UPLOAD_STEP.MAP_COLUMNS) {\n if (shouldResetColumnMapping && mappedColumns.length > 0) {\n NotificationService.getInstance().showNotification({\n isLoading: false,\n message: t`Column mappings have been reset due to changes in the selected case type or file.`,\n severity: 'info',\n });\n }\n if ((shouldResetColumnMapping && mappedColumns.length > 0) || mappedColumns.length === 0) {\n await setMappedColumns(UploadUtil.getInitialMappedColumns(completeCaseType, rawData));\n }\n }\n\n if (nextStep === UPLOAD_STEP.PREVIEW) {\n set({\n casesForVerificationFromSourceData: UploadUtil.getCasesForUpload({\n caseTypeId: completeCaseType.id,\n createdInDataCollectionId,\n mappedColumns,\n rawData,\n }),\n });\n }\n\n if (nextStep === UPLOAD_STEP.MAP_SEQUENCES) {\n if (shouldResetSequenceMapping && Object.keys(sequenceMapping).length > 0) {\n NotificationService.getInstance().showNotification({\n isLoading: false,\n message: t`Sequence mappings have been reset due to changes in the selected uploaded files.`,\n severity: 'info',\n });\n }\n if ((shouldResetSequenceMapping && sequenceMapping) || !sequenceMapping) {\n set({ sequenceMapping: UploadUtil.getEpiUploadSequenceMapping(completeCaseType, validatedCases, sequenceFilesDataTransfer) });\n }\n if (UploadUtil.getSequenceMappingStats(get().sequenceMapping, sequenceFilesDataTransfer).numberOfFilesToMap === 0) {\n nextStep = get().findNextStep(nextStep);\n }\n }\n\n if (nextStep !== null) {\n set({ activeStep: nextStep, shouldResetColumnMapping: false, shouldResetSequenceMapping: false });\n }\n },\n\n goToPreviousStep: () => {\n const { activeStep, sequenceFilesDataTransfer, sequenceMapping } = get();\n let previousStep = get().findPreviousStep(activeStep);\n if (previousStep === UPLOAD_STEP.MAP_SEQUENCES && UploadUtil.getSequenceMappingStats(sequenceMapping, sequenceFilesDataTransfer).numberOfFilesToMap === 0) {\n previousStep = get().findPreviousStep(previousStep);\n }\n\n if (previousStep !== null) {\n set({ activeStep: previousStep });\n }\n },\n\n invalidateCaseValidationQuery: async () => {\n const { validateCasesQueryKey } = get();\n\n await QueryClientService.getInstance().invalidateQueryKeys([validateCasesQueryKey]);\n QueryClientService.getInstance().removeQueries([validateCasesQueryKey]);\n },\n\n reset: async () => {\n const { invalidateCaseValidationQuery } = get();\n await invalidateCaseValidationQuery();\n set(createEpiUploadStoreInitialState(initialStateParams));\n },\n\n setCaseTypeId: (caseTypeId: string) => {\n set({ caseTypeId });\n },\n\n setCols: (cols: CaseDbCol[]) => {\n set({ cols });\n },\n\n setCompleteCaseType: async (completeCaseType: CaseDbCompleteCaseType) => {\n const { completeCaseType: oldCompleteCaseType, createdInDataCollectionId, dataCollectionOptions, invalidateCaseValidationQuery } = get();\n set({ completeCaseType });\n if (completeCaseType && completeCaseType.id !== oldCompleteCaseType?.id) {\n await invalidateCaseValidationQuery();\n set({ shouldResetColumnMapping: true });\n const createdInDataCollectionOptions = dataCollectionOptions.filter(option => {\n const dataCollectionId = option.value;\n return completeCaseType.case_type_access_abacs[dataCollectionId]?.is_private && completeCaseType.case_type_access_abacs[dataCollectionId]?.add_case_set;\n });\n set({ createdInDataCollectionOptions });\n if (createdInDataCollectionOptions.length === 1) {\n set({ createdInDataCollectionId: createdInDataCollectionOptions[0].value });\n }\n\n // If the current createdInDataCollectionId is not valid for the new completeCaseType, reset it\n if (createdInDataCollectionId) {\n const isValid = createdInDataCollectionOptions.some(option => option.value === createdInDataCollectionId);\n if (!isValid) {\n set({ createdInDataCollectionId: null });\n }\n }\n }\n },\n\n setCreatedInDataCollectionId: (createdInDataCollectionId: string) => {\n set({ createdInDataCollectionId });\n },\n\n setDataCollectionOptions: (options: OptionBase<string>[]) => {\n set({ dataCollectionOptions: options });\n },\n\n setFileList: async (fileList: FileList) => {\n const { setRawData, setSheet, setSheetOptions } = get();\n\n const file = fileList?.length > 0 ? fileList[0] : null;\n set({ fileName: file?.name ?? null, fileParsingError: null, rawData: null, sheet: null });\n\n if (!file) {\n await setSheet(null);\n await setRawData(null);\n set({ fileList: null });\n return;\n }\n\n set({ fileList });\n try {\n if (!UploadUtil.isXlsxFile(file.name)) {\n const data = await UploadUtil.readRawData(fileList);\n await setRawData(data);\n }\n const sheetOptions = await UploadUtil.getSheetNameOptions(fileList);\n await setSheetOptions(sheetOptions);\n } catch (error) {\n console.log(error);\n await setSheet(null);\n await setSheetOptions([]);\n set({ fileList: null, fileParsingError: t('Error reading file') });\n }\n },\n\n setMappedColumns: async (mappedColumns: UploadMappedColumn[]) => {\n const { invalidateCaseValidationQuery } = get();\n await invalidateCaseValidationQuery();\n set({ mappedColumns });\n },\n\n setRawData: async (rawData: string[][]) => {\n const { cols, invalidateCaseValidationQuery, rawData: oldRawData, setCaseTypeId } = get();\n if (JSON.stringify(oldRawData) !== JSON.stringify(rawData)) {\n set({ shouldResetColumnMapping: true });\n await invalidateCaseValidationQuery();\n }\n set({ rawData });\n if (!rawData || rawData.length === 0) {\n return;\n }\n const bestMatchingCaseType = UploadUtil.getCaseTypeFromColumnLabels(cols, rawData[0]);\n if (bestMatchingCaseType) {\n setCaseTypeId(bestMatchingCaseType.id);\n }\n },\n\n setSequenceFilesDataTransfer: (dataTransfer: DataTransfer) => {\n const { sequenceFilesDataTransfer, sequenceMapping } = get();\n if (dataTransfer === sequenceFilesDataTransfer) {\n return;\n }\n set({ sequenceFilesDataTransfer: dataTransfer });\n if (sequenceMapping) {\n set({ shouldResetSequenceMapping: true });\n }\n },\n\n setSequenceMapping: (sequenceMapping: UploadSequenceMapping) => {\n set({ sequenceMapping });\n },\n\n setSheet: async (sheet: string) => {\n const { fileList, setRawData } = get();\n set({ fileParsingError: null, rawData: null, sheet });\n\n if (!sheet) {\n return;\n }\n try {\n // Call the callback with parsed data\n await setRawData(await UploadUtil.readRawData(fileList, sheet));\n } catch (error) {\n console.error('Error reading sheet', error);\n set({ sheet: null });\n set({ fileParsingError: t('Error reading sheet') });\n await setRawData(null);\n return;\n }\n },\n\n setSheetOptions: async (sheetOptions: AutoCompleteOption<string>[]) => {\n const { setSheet } = get();\n set({ sheetOptions });\n if (sheetOptions.length === 1) {\n await setSheet(sheetOptions[0].value);\n }\n },\n };\n });\n};\n","import { createContext } from 'react';\nimport type { StoreApi } from 'zustand';\n\nimport type { UploadStore } from './uploadStore';\n\nexport const UploadStoreContext = 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package/dist/stores/uploadStore/uploadStore.d.ts ADDED Viewed

@@ -0,0 +1,80 @@
+import { CaseDbCaseBatchUploadResult, CaseDbCaseForUpload, CaseDbCaseUploadResult, CaseDbCol, CaseDbCompleteCaseType } from '@gen-epix/api-casedb';
+import { AutoCompleteOption, OptionBase } from '@gen-epix/ui-form/models/form';
+import { UploadMappedColumn, UploadSequenceMapping, UPLOAD_STEP } from '../../models/upload';
+export declare const STEP_ORDER_UPLOAD: UPLOAD_STEP[];
+export declare const STEP_ORDER_BULK_EDIT: UPLOAD_STEP[];
+export interface CreateUploadStoreInitialStateKwArg {
+    caseRightsColMap?: {
+        [colId: string]: string[];
+    };
+    casesForVerificationFromSourceData?: CaseDbCaseForUpload[];
+    completeCaseType?: CaseDbCompleteCaseType;
+    goBackFromFirstStepCallback?: () => void;
+    goBackFromFirstStepLabel?: string;
+    onUploadComplete?: (result: CaseDbCaseBatchUploadResult) => Promise<void> | void;
+    stepOrder: UPLOAD_STEP[];
+    uploadCompleteButtonCallback?: () => void;
+    uploadCompleteButtonLabel?: string;
+}
+export type CreateUploadStoreKwArgs = CreateUploadStoreInitialStateKwArg;
+export type UploadStore = UploadStoreActions & UploadStoreState;
+export interface UploadStoreActions {
+    destroy: () => Promise<void>;
+    findNextStep: (currentStep: UPLOAD_STEP) => UPLOAD_STEP;
+    findPreviousStep: (currentStep: UPLOAD_STEP) => UPLOAD_STEP;
+    goToNextStep: () => Promise<void>;
+    goToPreviousStep: () => void;
+    invalidateCaseValidationQuery: () => Promise<void>;
+    reset: () => Promise<void>;
+    setCaseTypeId: (caseTypeId: string) => void;
+    setCols: (cols: CaseDbCol[]) => void;
+    setCompleteCaseType: (completeCaseType: CaseDbCompleteCaseType) => void;
+    setCreatedInDataCollectionId: (createdInDataCollectionId: string) => void;
+    setDataCollectionOptions: (options: OptionBase<string>[]) => void;
+    setFileList: (fileList: FileList) => Promise<void>;
+    setMappedColumns: (mappedColumns: UploadMappedColumn[]) => Promise<void>;
+    setRawData: (rawData: string[][]) => Promise<void>;
+    setSequenceFilesDataTransfer: (dataTransfer: DataTransfer) => void;
+    setSequenceMapping: (sequenceMapping: UploadSequenceMapping) => void;
+    setSheet: (sheet: string) => Promise<void>;
+    setSheetOptions: (sheetOptions: AutoCompleteOption<string>[]) => Promise<void>;
+}
+export interface UploadStoreState {
+    activeStep: UPLOAD_STEP;
+    assemblyProtocolId: string;
+    caseRightsColMap: {
+        [colId: string]: string[];
+    };
+    casesForVerificationFromSourceData: CaseDbCaseForUpload[];
+    caseTypeId: string;
+    cols: CaseDbCol[];
+    completeCaseType: CaseDbCompleteCaseType;
+    createdInDataCollectionId: string;
+    createdInDataCollectionOptions: AutoCompleteOption<string>[];
+    dataCollectionOptions: OptionBase<string>[];
+    fileList: FileList;
+    fileName: string;
+    fileParsingError: string;
+    goBackFromFirstStepCallback: () => void;
+    goBackFromFirstStepLabel: string;
+    initError: unknown;
+    isInitLoading: boolean;
+    mappedColumns: UploadMappedColumn[];
+    onUploadComplete: (result: CaseDbCaseBatchUploadResult) => Promise<void> | void;
+    rawData: string[][];
+    sampleIdColId: string;
+    selectedIdsForUpload: string[];
+    sequenceFilesDataTransfer: DataTransfer;
+    sequenceMapping: UploadSequenceMapping;
+    sequencingProtocolId: string;
+    sheet: string;
+    sheetOptions: AutoCompleteOption<string>[];
+    shouldResetColumnMapping: boolean;
+    shouldResetSequenceMapping: boolean;
+    stepOrder: UPLOAD_STEP[];
+    uploadCompleteButtonCallback: () => void;
+    uploadCompleteButtonLabel: string;
+    validateCasesQueryKey: string[];
+    validatedCases: CaseDbCaseUploadResult[];
+}
+export declare const createUploadStore: (kwArgs: CreateUploadStoreKwArgs) => import('zustand').StoreApi<UploadStore>;

package/dist/stores/uploadStore/uploadStoreContext.d.ts ADDED Viewed

@@ -0,0 +1,3 @@
+import { StoreApi } from 'zustand';
+import { UploadStore } from './uploadStore';
+export declare const UploadStoreContext: import('react').Context<StoreApi<UploadStore>>;

package/dist/stores/userProfileStore/index.d.ts ADDED Viewed

	@@ -0,0 +1 @@
1	+ export * from './userProfileStore';