@gen-epix/ui-client-casedb 4.0.0

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Files changed (832) hide show
  1. package/LICENSE +287 -0
  2. package/README.md +101 -0
  3. package/dist/@types/mui.d.ts +12 -0
  4. package/dist/@types/ui-casedb.d.ts +3 -0
  5. package/dist/@types/vite-env.d.ts +3 -0
  6. package/dist/_chunks/AddCasesToEventDialog.js +246 -0
  7. package/dist/_chunks/AddCasesToEventDialog.js.map +1 -0
  8. package/dist/_chunks/CaseContentForm.js +43 -0
  9. package/dist/_chunks/CaseContentForm.js.map +1 -0
  10. package/dist/_chunks/CaseDbDownloadUtil.js +2307 -0
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  12. package/dist/_chunks/CaseInfoDialog.js +509 -0
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  16. package/dist/_chunks/CaseTypeInfoDialog.js +470 -0
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  18. package/dist/_chunks/CasesAlreadyInCaseSetWarning.js +123 -0
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  20. package/dist/_chunks/CollectionIcon.js +18 -0
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  22. package/dist/_chunks/CompletCaseTypeLoader.js +53 -0
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  24. package/dist/_chunks/CreateEventDialogSuccessNotificationMessage.js +18 -0
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  26. package/dist/_chunks/CustomTabPanel.js +21 -0
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  28. package/dist/_chunks/Dashboard.js +2582 -0
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  32. package/dist/_chunks/DataCollectionAccessInfo.js +66 -0
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  34. package/dist/_chunks/EpiCurveUtil.js +378 -0
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  36. package/dist/_chunks/EpiCurveWidget.js +570 -0
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  38. package/dist/_chunks/FilterUtil.js +1537 -0
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  40. package/dist/_chunks/FindSimilarCasesDialog.js +439 -0
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  42. package/dist/_chunks/FindSimilarCasesUtil.js +100 -0
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  44. package/dist/_chunks/HomePageTrends.js +276 -0
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  138. package/dist/_chunks/yup.js +73 -0
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  140. package/dist/classes/errors/UploadError.d.ts +5 -0
  141. package/dist/classes/errors/index.d.ts +1 -0
  142. package/dist/classes/errors/index.js +11 -0
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  144. package/dist/classes/filters/SelectionFilter.d.ts +11 -0
  145. package/dist/classes/filters/TreeFilter.d.ts +11 -0
  146. package/dist/classes/services/DataService/DataService.d.ts +13 -0
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  150. package/dist/classes/services/EventBusService/EventBusService.d.ts +49 -0
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  154. package/dist/classes/services/LineListService/LineListCaseSetMembersService/LineListCaseSetMembersService.d.ts +9 -0
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  158. package/dist/classes/services/LineListService/LineListIsOwnCaseService/LineListIsOwnCaseService.d.ts +9 -0
  159. package/dist/classes/services/LineListService/LineListIsOwnCaseService/index.d.ts +1 -0
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  166. package/dist/components/app/CaseDbApp/CaseDbApp.d.ts +1 -0
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  170. package/dist/components/form/fields/ArrangementEditor/ArrangementEditor.d.ts +17 -0
  171. package/dist/components/form/fields/ArrangementEditor/index.d.ts +1 -0
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  173. package/dist/components/form/fields/ArrangementEditor/index.js.map +1 -0
  174. package/dist/components/ui/AddCasesToEventDialog/AddCasesToEventDialog.d.ts +10 -0
  175. package/dist/components/ui/AddCasesToEventDialog/AddCasesToEventDialogSuccessNotificationMessage.d.ts +6 -0
  176. package/dist/components/ui/AddCasesToEventDialog/index.d.ts +1 -0
  177. package/dist/components/ui/AddCasesToEventDialog/index.js +2 -0
  178. package/dist/components/ui/CaseContentForm/CaseContentForm.d.ts +10 -0
  179. package/dist/components/ui/CaseContentForm/index.d.ts +1 -0
  180. package/dist/components/ui/CaseContentForm/index.js +2 -0
  181. package/dist/components/ui/CaseContentFormDialog/CaseContentFormDialog.d.ts +9 -0
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  185. package/dist/components/ui/CaseInfoDialog/CaseCaseSetInfo.d.ts +6 -0
  186. package/dist/components/ui/CaseInfoDialog/CaseContent.d.ts +6 -0
  187. package/dist/components/ui/CaseInfoDialog/CaseInfoDialog.d.ts +15 -0
  188. package/dist/components/ui/CaseInfoDialog/CaseInfoForm.d.ts +10 -0
  189. package/dist/components/ui/CaseInfoDialog/CaseSharingForm.d.ts +9 -0
  190. package/dist/components/ui/CaseInfoDialog/CaseSharingInfo.d.ts +3 -0
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  218. package/dist/components/ui/CasesAlreadyInCaseSetWarning/CasesAlreadyInCaseSetWarning.d.ts +5 -0
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@@ -0,0 +1,1110 @@
1
+ import { CaseSetCategoryAdminPage as e } from "../pages/CaseSetCategoryAdminPage/index.js";
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+ import { CaseSetStatusAdminPage as t } from "../pages/CaseSetStatusAdminPage/index.js";
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+ import { CaseTypesAdminPage as n } from "../pages/CaseTypesAdminPage/index.js";
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+ import { CaseTypeSetCategoriesAdminPage as r } from "../pages/CaseTypeSetCategoriesAdminPage/index.js";
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+ import { CaseTypeSetsAdminPage as i } from "../pages/CaseTypeSetsAdminPage/index.js";
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+ import { ColsAdminPage as a } from "../pages/ColsAdminPage/index.js";
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+ import { ColSetsAdminPage as o } from "../pages/ColSetsAdminPage/index.js";
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+ import { ConceptRelationsAdminPage as s } from "../pages/ConceptRelationsAdminPage/index.js";
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+ import { ConceptsAdminPage as c } from "../pages/ConceptsAdminPage/index.js";
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+ import { ConceptSetsAdminPage as l } from "../pages/ConceptSetsAdminPage/index.js";
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+ import { DataCollectionsAdminPage as u } from "../pages/DataCollectionsAdminPage/index.js";
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+ import { DataCollectionSetsAdminPage as d } from "../pages/DataCollectionSetsAdminPage/index.js";
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+ import { DataCollectionVisualizationPage as f } from "../pages/DataCollectionVisualizationPage/index.js";
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+ import { DimsAdminPage as p } from "../pages/DimsAdminPage/index.js";
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+ import { DiseasesAdminPage as m } from "../pages/DiseasesAdminPage/index.js";
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+ import { EtiologicalAgentsAdminPage as h } from "../pages/EtiologicalAgentsAdminPage/index.js";
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+ import { EtiologiesAdminPage as g } from "../pages/EtiologiesAdminPage/index.js";
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+ import { OrganizationAccessCasePoliciesAdminPage as _ } from "../pages/OrganizationAccessCasePoliciesAdminPage/index.js";
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+ import { OrganizationShareCasePoliciesAdminPage as v } from "../pages/OrganizationShareCasePoliciesAdminPage/index.js";
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+ import { RefColsAdminPage as y } from "../pages/RefColsAdminPage/index.js";
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+ import { RefDimsAdminPage as b } from "../pages/RefDimsAdminPage/index.js";
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+ import { RegionRelationsAdminPage as x } from "../pages/RegionRelationsAdminPage/index.js";
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+ import { RegionsAdminPage as S } from "../pages/RegionsAdminPage/index.js";
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+ import { RegionSetsAdminPage as C } from "../pages/RegionSetsAdminPage/index.js";
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+ import { RegionSetShapesAdminPage as w } from "../pages/RegionSetShapesAdminPage/index.js";
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+ import { UserAccessCasePoliciesAdminPage as T } from "../pages/UserAccessCasePoliciesAdminPage/index.js";
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+ import { UserEffectiveRightsAdminPage as E } from "../pages/UserEffectiveRightsAdminPage/index.js";
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+ import { UserEffectiveRightsTesterAdminPage as D } from "../pages/UserEffectiveRightsTesterAdminPage/index.js";
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+ import { UserShareCasePoliciesAdminPage as O } from "../pages/UserShareCasePoliciesAdminPage/index.js";
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+ import { CaseDbUsersAdminPage as k } from "../pages/CaseDbUsersAdminPage/index.js";
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+ import { CasesDetailPage as A } from "../pages/CasesDetailPage/index.js";
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+ import { CasesPage as j } from "../pages/CasesPage/index.js";
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+ import { EventsDetailPage as M } from "../pages/EventsDetailPage/index.js";
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+ import { EventsPage as N } from "../pages/EventsPage/index.js";
35
+ import { TrendsPage as P } from "../pages/TrendsPage/index.js";
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+ import { UploadPage as F } from "../pages/UploadPage/index.js";
37
+ import { t as I } from "i18next";
38
+ import { CaseDbCommandName as L, CaseDbPermissionType as R } from "@gen-epix/api-casedb";
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+ import { jsx as z } from "react/jsx-runtime";
40
+ import { ADMIN_PAGE_CATEGORY as B } from "@gen-epix/ui/models/admin";
41
+ import { createAdminRoutes as V, createRoutes as H } from "@gen-epix/ui/routes";
42
+ import { RouterErrorPage as U } from "@gen-epix/ui/pages/RouterErrorPage";
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+ //#region src/routes/adminRoutes.tsx
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+ var W = () => [{
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+ Component: E,
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+ errorElement: /* @__PURE__ */ z(U, {}),
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+ handle: {
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+ requiredPermissions: [
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+ {
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+ command_name: L.ColSetMemberCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.CaseTypeSetCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.ColSetCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.CaseTypeSetMemberCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.CaseTypeSetCategoryCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.DataCollectionCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.OrganizationAccessCasePolicyCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.OrganizationShareCasePolicyCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.UserAccessCasePolicyCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.UserShareCasePolicyCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.ColCrudCommand,
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+ permission_type: R.READ
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+ }
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+ ],
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+ requiresUserProfile: !0,
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+ title: I`Effective rights`
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+ },
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+ path: "/management/users/:userId/effective-rights"
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+ }, {
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+ Component: D,
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+ errorElement: /* @__PURE__ */ z(U, {}),
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+ handle: {
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+ requiredPermissions: [
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+ {
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+ command_name: L.ColSetMemberCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.CaseTypeSetCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.ColSetCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.CaseTypeSetMemberCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.CaseTypeSetCategoryCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.DataCollectionCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.OrganizationAccessCasePolicyCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.OrganizationShareCasePolicyCrudCommand,
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+ permission_type: R.READ
134
+ },
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+ {
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+ command_name: L.UserAccessCasePolicyCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.UserShareCasePolicyCrudCommand,
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+ permission_type: R.READ
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+ },
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+ {
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+ command_name: L.ColCrudCommand,
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+ permission_type: R.READ
146
+ }
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+ ],
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+ requiresUserProfile: !0,
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+ requiresUserProfile: !0,
823
+ subTitle: I`View all dimensions`,
824
+ title: I`Dimensions (all)`
825
+ },
826
+ index: !0,
827
+ path: "/management/dimensions"
828
+ }, {
829
+ Component: a,
830
+ errorElement: /* @__PURE__ */ z(U, {}),
831
+ handle: {
832
+ category: B.HELPERS,
833
+ requiredPermissions: [
834
+ {
835
+ command_name: L.ColCrudCommand,
836
+ permission_type: R.READ
837
+ },
838
+ {
839
+ command_name: L.RefColCrudCommand,
840
+ permission_type: R.READ
841
+ },
842
+ {
843
+ command_name: L.TreeAlgorithmCrudCommand,
844
+ permission_type: R.READ
845
+ },
846
+ {
847
+ command_name: L.CaseTypeCrudCommand,
848
+ permission_type: R.READ
849
+ }
850
+ ],
851
+ requiresUserProfile: !0,
852
+ subTitle: I`Manage columns`,
853
+ title: I`Columns`
854
+ },
855
+ path: "/management/dimensions/:dimId/columns"
856
+ }],
857
+ errorElement: /* @__PURE__ */ z(U, {}),
858
+ handle: {
859
+ requiredPermissions: [],
860
+ requirePermissionForChildRoute: !0,
861
+ requiresUserProfile: !0,
862
+ title: I`Dimensions (all)`
863
+ },
864
+ path: "/management/dimensions"
865
+ },
866
+ {
867
+ Component: a,
868
+ errorElement: /* @__PURE__ */ z(U, {}),
869
+ handle: {
870
+ category: B.HELPERS,
871
+ requiredPermissions: [
872
+ {
873
+ command_name: L.ColCrudCommand,
874
+ permission_type: R.READ
875
+ },
876
+ {
877
+ command_name: L.RefColCrudCommand,
878
+ permission_type: R.READ
879
+ },
880
+ {
881
+ command_name: L.TreeAlgorithmCrudCommand,
882
+ permission_type: R.READ
883
+ },
884
+ {
885
+ command_name: L.CaseTypeCrudCommand,
886
+ permission_type: R.READ
887
+ }
888
+ ],
889
+ requiresUserProfile: !0,
890
+ subTitle: I`View all columns`,
891
+ title: I`Columns (all)`
892
+ },
893
+ path: "/management/columns"
894
+ },
895
+ {
896
+ Component: f,
897
+ errorElement: /* @__PURE__ */ z(U, {}),
898
+ handle: {
899
+ category: B.HELPERS,
900
+ requiredPermissions: [],
901
+ requiresUserProfile: !0,
902
+ subTitle: I`View data collection visualization`,
903
+ title: I`Data collection visualization`
904
+ },
905
+ path: "/management/data-collection-visualization-page"
906
+ }
907
+ ], K = [
908
+ {
909
+ command_name: L.CaseTypeCrudCommand,
910
+ permission_type: R.READ
911
+ },
912
+ {
913
+ command_name: L.ConceptSetCrudCommand,
914
+ permission_type: R.READ
915
+ },
916
+ {
917
+ command_name: L.OrganizationCrudCommand,
918
+ permission_type: R.READ
919
+ },
920
+ {
921
+ command_name: L.RegionSetCrudCommand,
922
+ permission_type: R.READ
923
+ },
924
+ {
925
+ command_name: L.RetrieveCasesByIdCommand,
926
+ permission_type: R.EXECUTE
927
+ },
928
+ {
929
+ command_name: L.RetrieveCasesByQueryCommand,
930
+ permission_type: R.EXECUTE
931
+ },
932
+ {
933
+ command_name: L.RetrievePhylogeneticTreeByCasesCommand,
934
+ permission_type: R.EXECUTE
935
+ }
936
+ ], q = (e = G()) => H({
937
+ adminRoutes: e,
938
+ rootChildren: [
939
+ {
940
+ children: [{
941
+ Component: j,
942
+ errorElement: /* @__PURE__ */ z(U, {}),
943
+ handle: {
944
+ hidden: !1,
945
+ requiredPermissions: [
946
+ {
947
+ command_name: L.CaseTypeSetCategoryCrudCommand,
948
+ permission_type: R.READ
949
+ },
950
+ {
951
+ command_name: L.CaseTypeSetCrudCommand,
952
+ permission_type: R.READ
953
+ },
954
+ {
955
+ command_name: L.CaseTypeSetMemberCrudCommand,
956
+ permission_type: R.READ
957
+ },
958
+ {
959
+ command_name: L.RetrieveCaseTypeStatsCommand,
960
+ permission_type: R.EXECUTE
961
+ }
962
+ ],
963
+ requiresUserProfile: !0,
964
+ title: I`Cases`
965
+ },
966
+ index: !0,
967
+ path: "/cases"
968
+ }, {
969
+ Component: A,
970
+ errorElement: /* @__PURE__ */ z(U, {}),
971
+ handle: {
972
+ hidden: !1,
973
+ requiredPermissions: [...K],
974
+ requiresUserProfile: !0,
975
+ title: I`Case type`
976
+ },
977
+ path: "/cases/:slug/:caseTypeId"
978
+ }],
979
+ errorElement: /* @__PURE__ */ z(U, {}),
980
+ handle: {
981
+ hidden: !1,
982
+ requiredPermissions: [],
983
+ requiresUserProfile: !0,
984
+ title: I`Cases`
985
+ },
986
+ path: "/cases"
987
+ },
988
+ {
989
+ children: [{
990
+ Component: N,
991
+ errorElement: /* @__PURE__ */ z(U, {}),
992
+ handle: {
993
+ hidden: !1,
994
+ requiredPermissions: [
995
+ {
996
+ command_name: L.CaseTypeSetCategoryCrudCommand,
997
+ permission_type: R.READ
998
+ },
999
+ {
1000
+ command_name: L.CaseSetCrudCommand,
1001
+ permission_type: R.READ
1002
+ },
1003
+ {
1004
+ command_name: L.CaseSetStatusCrudCommand,
1005
+ permission_type: R.READ
1006
+ },
1007
+ {
1008
+ command_name: L.CaseSetCategoryCrudCommand,
1009
+ permission_type: R.READ
1010
+ },
1011
+ {
1012
+ command_name: L.CaseTypeCrudCommand,
1013
+ permission_type: R.READ
1014
+ },
1015
+ {
1016
+ command_name: L.CaseTypeSetCrudCommand,
1017
+ permission_type: R.READ
1018
+ },
1019
+ {
1020
+ command_name: L.CaseTypeSetMemberCrudCommand,
1021
+ permission_type: R.READ
1022
+ },
1023
+ {
1024
+ command_name: L.RetrieveCaseSetStatsCommand,
1025
+ permission_type: R.EXECUTE
1026
+ }
1027
+ ],
1028
+ requiresUserProfile: !0,
1029
+ title: I`Events`
1030
+ },
1031
+ index: !0
1032
+ }, {
1033
+ Component: M,
1034
+ errorElement: /* @__PURE__ */ z(U, {}),
1035
+ handle: {
1036
+ hidden: !1,
1037
+ requiredPermissions: [{
1038
+ command_name: L.CaseSetCrudCommand,
1039
+ permission_type: R.READ
1040
+ }, ...K],
1041
+ requiresUserProfile: !0,
1042
+ title: I`Event`
1043
+ },
1044
+ path: "/events/:slug/:caseSetId"
1045
+ }],
1046
+ errorElement: /* @__PURE__ */ z(U, {}),
1047
+ handle: {
1048
+ hidden: !1,
1049
+ requiredPermissions: [],
1050
+ requiresUserProfile: !0,
1051
+ title: I`Events`
1052
+ },
1053
+ path: "/events"
1054
+ },
1055
+ {
1056
+ Component: P,
1057
+ errorElement: /* @__PURE__ */ z(U, {}),
1058
+ handle: {
1059
+ disabled: !0,
1060
+ requiredPermissions: [],
1061
+ requiresUserProfile: !0,
1062
+ title: I`Trends`
1063
+ },
1064
+ path: "/trends"
1065
+ },
1066
+ {
1067
+ Component: F,
1068
+ errorElement: /* @__PURE__ */ z(U, {}),
1069
+ handle: {
1070
+ requiredPermissions: [
1071
+ {
1072
+ command_name: L.CaseTypeCrudCommand,
1073
+ permission_type: R.READ
1074
+ },
1075
+ {
1076
+ command_name: L.DataCollectionCrudCommand,
1077
+ permission_type: R.READ
1078
+ },
1079
+ {
1080
+ command_name: L.ColCrudCommand,
1081
+ permission_type: R.READ
1082
+ },
1083
+ {
1084
+ command_name: L.RetrieveProtocolsCommand,
1085
+ permission_type: R.EXECUTE
1086
+ },
1087
+ {
1088
+ command_name: L.CreateFileForReadSetCommand,
1089
+ permission_type: R.EXECUTE
1090
+ },
1091
+ {
1092
+ command_name: L.CreateFileForSeqCommand,
1093
+ permission_type: R.EXECUTE
1094
+ },
1095
+ {
1096
+ command_name: L.UploadCasesCommand,
1097
+ permission_type: R.EXECUTE
1098
+ }
1099
+ ],
1100
+ requiresUserProfile: !0,
1101
+ title: I`Upload`
1102
+ },
1103
+ path: "/upload"
1104
+ }
1105
+ ]
1106
+ });
1107
+ //#endregion
1108
+ export { G as createAdminRoutes, q as createRoutes };
1109
+
1110
+ //# sourceMappingURL=index.js.map