@gen-epix/ui-casedb 2.0.1 → 2.1.0

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Files changed (362) hide show
  1. package/dist/index.d.ts +2 -2412
  2. package/dist/index.js +15603 -15632
  3. package/dist/index.js.map +1 -1
  4. package/dist/src/classes/errors/UploadError.d.ts +5 -0
  5. package/dist/src/classes/errors/index.d.ts +1 -0
  6. package/dist/src/classes/filters/SelectionFilter.d.ts +10 -0
  7. package/dist/src/classes/filters/TreeFilter.d.ts +10 -0
  8. package/dist/src/classes/managers/EpiDataManager/EpiDataManager.d.ts +14 -0
  9. package/dist/src/classes/managers/EpiDataManager/index.d.ts +1 -0
  10. package/dist/src/classes/managers/EpiEventBusManager/EpiEventBusManager.d.ts +48 -0
  11. package/dist/src/classes/managers/EpiEventBusManager/index.d.ts +1 -0
  12. package/dist/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.d.ts +9 -0
  13. package/dist/src/classes/managers/EpiHighlightingManager/index.d.ts +1 -0
  14. package/dist/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.d.ts +11 -0
  15. package/dist/src/classes/managers/EpiLineListCaseSetMembersManager/index.d.ts +1 -0
  16. package/dist/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.d.ts +11 -0
  17. package/dist/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.d.ts +6 -0
  18. package/dist/src/components/epi/EpiAddCasesToEventDialog/index.d.ts +1 -0
  19. package/dist/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.d.ts +10 -0
  20. package/dist/src/components/epi/EpiBulkEditCaseDialog/index.d.ts +1 -0
  21. package/dist/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.d.ts +6 -0
  22. package/dist/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.d.ts +6 -0
  23. package/dist/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.d.ts +9 -0
  24. package/dist/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.d.ts +10 -0
  25. package/dist/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.d.ts +9 -0
  26. package/dist/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.d.ts +3 -0
  27. package/dist/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.d.ts +6 -0
  28. package/dist/src/components/epi/EpiCaseInfoDialog/index.d.ts +1 -0
  29. package/dist/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.d.ts +6 -0
  30. package/dist/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.d.ts +6 -0
  31. package/dist/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.d.ts +8 -0
  32. package/dist/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.d.ts +11 -0
  33. package/dist/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.d.ts +10 -0
  34. package/dist/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.d.ts +3 -0
  35. package/dist/src/components/epi/EpiCaseSetInfoDialog/index.d.ts +1 -0
  36. package/dist/src/components/epi/EpiCaseSummary/EpiCaseSummary.d.ts +5 -0
  37. package/dist/src/components/epi/EpiCaseSummary/index.d.ts +1 -0
  38. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.d.ts +5 -0
  39. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.d.ts +4 -0
  40. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.d.ts +5 -0
  41. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.d.ts +8 -0
  42. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.d.ts +3 -0
  43. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.d.ts +9 -0
  44. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.d.ts +5 -0
  45. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.d.ts +5 -0
  46. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.d.ts +5 -0
  47. package/dist/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.d.ts +6 -0
  48. package/dist/src/components/epi/EpiCaseTypeInfoDialog/index.d.ts +10 -0
  49. package/dist/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.d.ts +5 -0
  50. package/dist/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.d.ts +5 -0
  51. package/dist/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.d.ts +1 -0
  52. package/dist/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.d.ts +7 -0
  53. package/dist/src/components/epi/EpiCompletCaseTypeLoader/index.d.ts +1 -0
  54. package/dist/src/components/epi/EpiContextMenu/EpiContextMenu.d.ts +20 -0
  55. package/dist/src/components/epi/EpiContextMenu/index.d.ts +1 -0
  56. package/dist/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.d.ts +11 -0
  57. package/dist/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.d.ts +6 -0
  58. package/dist/src/components/epi/EpiCreateEventDialog/index.d.ts +1 -0
  59. package/dist/src/components/epi/EpiCurveWidget/EpiCurveWidget.d.ts +1 -0
  60. package/dist/src/components/epi/EpiCurveWidget/index.d.ts +1 -0
  61. package/dist/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.d.ts +6 -0
  62. package/dist/src/components/epi/EpiCustomTabPanel/index.d.ts +1 -0
  63. package/dist/src/components/epi/EpiDashboard/EpiDashboard.d.ts +8 -0
  64. package/dist/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.d.ts +8 -0
  65. package/dist/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.d.ts +4 -0
  66. package/dist/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.d.ts +13 -0
  67. package/dist/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.d.ts +4 -0
  68. package/dist/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.d.ts +10 -0
  69. package/dist/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.d.ts +4 -0
  70. package/dist/src/components/epi/EpiDashboard/index.d.ts +1 -0
  71. package/dist/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.d.ts +7 -0
  72. package/dist/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.d.ts +8 -0
  73. package/dist/src/components/epi/EpiDashboardStoreLoader/index.d.ts +2 -0
  74. package/dist/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.d.ts +4 -0
  75. package/dist/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.d.ts +1 -0
  76. package/dist/src/components/epi/EpiDataCollectionAccessInfo/index.d.ts +1 -0
  77. package/dist/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.d.ts +12 -0
  78. package/dist/src/components/epi/EpiFindSimilarCasesDialog/index.d.ts +1 -0
  79. package/dist/src/components/epi/EpiLegendaItem/EpiLegendaItem.d.ts +10 -0
  80. package/dist/src/components/epi/EpiLegendaItem/index.d.ts +1 -0
  81. package/dist/src/components/epi/EpiLineListWidget/EpiLineListWidget.d.ts +10 -0
  82. package/dist/src/components/epi/EpiLineListWidget/EpiLineListWidgetPrimaryMenu.d.ts +5 -0
  83. package/dist/src/components/epi/EpiLineListWidget/EpiLineListWidgetSecondaryMenu.d.ts +4 -0
  84. package/dist/src/components/epi/EpiLineListWidget/EpiLineListWidgetTitle.d.ts +1 -0
  85. package/dist/src/components/epi/EpiLineListWidget/index.d.ts +1 -0
  86. package/dist/src/components/epi/EpiLineListWidget/useEpiLineListWidgetEmitDownloadOptions.d.ts +1 -0
  87. package/dist/src/components/epi/EpiMapWidget/EpiMapWidget.d.ts +1 -0
  88. package/dist/src/components/epi/EpiMapWidget/index.d.ts +1 -0
  89. package/dist/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.d.ts +11 -0
  90. package/dist/src/components/epi/EpiRemoveCasesFromEventDialog/index.d.ts +1 -0
  91. package/dist/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.d.ts +10 -0
  92. package/dist/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.d.ts +11 -0
  93. package/dist/src/components/epi/EpiSequenceDownloadDialog/index.d.ts +1 -0
  94. package/dist/src/components/epi/EpiStratification/EpiStratification.d.ts +1 -0
  95. package/dist/src/components/epi/EpiStratification/index.d.ts +1 -0
  96. package/dist/src/components/epi/EpiTreeDescription/EpiTreeDescription.d.ts +5 -0
  97. package/dist/src/components/epi/EpiTreeDescription/index.d.ts +1 -0
  98. package/dist/src/components/epi/EpiTreeWidget/EpiTreeWidget.d.ts +14 -0
  99. package/dist/src/components/epi/EpiTreeWidget/index.d.ts +1 -0
  100. package/dist/src/components/epi/EpiUpload/EpiUpload.d.ts +1 -0
  101. package/dist/src/components/epi/EpiUpload/EpiUploadCaseResultTable.d.ts +13 -0
  102. package/dist/src/components/epi/EpiUpload/EpiUploadCreateCases.d.ts +1 -0
  103. package/dist/src/components/epi/EpiUpload/EpiUploadMapColumns.d.ts +1 -0
  104. package/dist/src/components/epi/EpiUpload/EpiUploadMapSequences.d.ts +1 -0
  105. package/dist/src/components/epi/EpiUpload/EpiUploadNavigation.d.ts +10 -0
  106. package/dist/src/components/epi/EpiUpload/EpiUploadSelectFile.d.ts +2 -0
  107. package/dist/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.d.ts +1 -0
  108. package/dist/src/components/epi/EpiUpload/EpiUploadValidate.d.ts +2 -0
  109. package/dist/src/components/epi/EpiUpload/EpiUploadValidateNavigation.d.ts +5 -0
  110. package/dist/src/components/epi/EpiUpload/index.d.ts +1 -0
  111. package/dist/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.d.ts +10 -0
  112. package/dist/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.d.ts +5 -0
  113. package/dist/src/components/epi/EpiUserRightsDialog/index.d.ts +1 -0
  114. package/dist/src/components/epi/EpiWarning/EpiWarning.d.ts +4 -0
  115. package/dist/src/components/epi/EpiWarning/index.d.ts +1 -0
  116. package/dist/src/components/epi/EpiWidget/EpiWidget.d.ts +13 -0
  117. package/dist/src/components/epi/EpiWidget/index.d.ts +1 -0
  118. package/dist/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.d.ts +5 -0
  119. package/dist/src/components/epi/EpiWidgetHeaderIconButton/index.d.ts +1 -0
  120. package/dist/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.d.ts +6 -0
  121. package/dist/src/components/epi/EpiWidgetMenu/index.d.ts +1 -0
  122. package/dist/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.d.ts +6 -0
  123. package/dist/src/components/epi/EpiWidgetUnavailable/index.d.ts +1 -0
  124. package/dist/src/components/ui/FileSelector/FileSelector.d.ts +7 -0
  125. package/dist/src/components/ui/FileSelector/index.d.ts +1 -0
  126. package/dist/src/components/ui/HomePageTrends/HomePageTrendCard.d.ts +9 -0
  127. package/dist/src/components/ui/HomePageTrends/HomePageTrends.d.ts +4 -0
  128. package/dist/src/components/ui/HomePageTrends/index.d.ts +1 -0
  129. package/dist/src/components/ui/PhylogeneticTreeComponent/PhylogeneticTreeComponent.d.ts +41 -0
  130. package/dist/src/components/ui/PhylogeneticTreeComponent/index.d.ts +1 -0
  131. package/dist/src/components/ui/UsersEffectiveRightsDetailsDialog/UsersEffectiveRightsDetailsDialog.d.ts +14 -0
  132. package/dist/src/components/ui/UsersEffectiveRightsDetailsDialog/index.d.ts +1 -0
  133. package/dist/src/context/caseAbac/CaseAbacContext.d.ts +15 -0
  134. package/dist/src/context/caseAbac/CaseAbacContextProvider.d.ts +6 -0
  135. package/dist/src/context/caseAbac/index.d.ts +3 -0
  136. package/dist/src/context/caseAbac/useCaseAbacContext.d.ts +2 -0
  137. package/dist/src/context/caseTypeAbac/CaseTypeAbacContext.d.ts +15 -0
  138. package/dist/src/context/caseTypeAbac/CaseTypeAbacContextProvider.d.ts +6 -0
  139. package/dist/src/context/caseTypeAbac/index.d.ts +3 -0
  140. package/dist/src/context/caseTypeAbac/useCaseTypeAbacContext.d.ts +2 -0
  141. package/dist/src/data/query.d.ts +61 -0
  142. package/dist/src/dataHooks/useAssemblyProtocolsQuery/index.d.ts +1 -0
  143. package/dist/src/dataHooks/useAssemblyProtocolsQuery/useAssemblyProtocolsQuery.d.ts +6 -0
  144. package/dist/src/dataHooks/useCaseRightsQuery/index.d.ts +1 -0
  145. package/dist/src/dataHooks/useCaseRightsQuery/useCaseRightsQuery.d.ts +3 -0
  146. package/dist/src/dataHooks/useCaseSetCategoriesQuery/index.d.ts +1 -0
  147. package/dist/src/dataHooks/useCaseSetCategoriesQuery/useCaseSetCategoriesQuery.d.ts +6 -0
  148. package/dist/src/dataHooks/useCaseSetRightsQuery/index.d.ts +1 -0
  149. package/dist/src/dataHooks/useCaseSetRightsQuery/useCaseSetRightsQuery.d.ts +3 -0
  150. package/dist/src/dataHooks/useCaseSetStatsQuery/index.d.ts +1 -0
  151. package/dist/src/dataHooks/useCaseSetStatsQuery/useCaseSetStatsQuery.d.ts +5 -0
  152. package/dist/src/dataHooks/useCaseSetStatusesQuery/index.d.ts +1 -0
  153. package/dist/src/dataHooks/useCaseSetStatusesQuery/useCaseSetStatusesQuery.d.ts +6 -0
  154. package/dist/src/dataHooks/useCaseSetsQuery/index.d.ts +1 -0
  155. package/dist/src/dataHooks/useCaseSetsQuery/useCaseSetsQuery.d.ts +6 -0
  156. package/dist/src/dataHooks/useCaseTypeSetCategoriesQuery/index.d.ts +1 -0
  157. package/dist/src/dataHooks/useCaseTypeSetCategoriesQuery/useCaseTypeSetCategoriesQuery.d.ts +6 -0
  158. package/dist/src/dataHooks/useCaseTypeSetCategoryPurposeQuery/index.d.ts +1 -0
  159. package/dist/src/dataHooks/useCaseTypeSetCategoryPurposeQuery/useCaseTypeSetCategoryPurposeQuery.d.ts +4 -0
  160. package/dist/src/dataHooks/useCaseTypeSetMembersQuery/index.d.ts +1 -0
  161. package/dist/src/dataHooks/useCaseTypeSetMembersQuery/useCaseTypeSetMembersQuery.d.ts +3 -0
  162. package/dist/src/dataHooks/useCaseTypeSetsQuery/index.d.ts +1 -0
  163. package/dist/src/dataHooks/useCaseTypeSetsQuery/useCaseTypeSetsQuery.d.ts +7 -0
  164. package/dist/src/dataHooks/useCaseTypeStatsQuery/index.d.ts +1 -0
  165. package/dist/src/dataHooks/useCaseTypeStatsQuery/useCaseTypeStatsQuery.d.ts +3 -0
  166. package/dist/src/dataHooks/useCaseTypesQuery/index.d.ts +1 -0
  167. package/dist/src/dataHooks/useCaseTypesQuery/useCaseTypesQuery.d.ts +9 -0
  168. package/dist/src/dataHooks/useColSetMembersQuery/index.d.ts +1 -0
  169. package/dist/src/dataHooks/useColSetMembersQuery/useColSetMembersQuery.d.ts +3 -0
  170. package/dist/src/dataHooks/useColSetsQuery/index.d.ts +1 -0
  171. package/dist/src/dataHooks/useColSetsQuery/useColSetsQuery.d.ts +6 -0
  172. package/dist/src/dataHooks/useColTypesQuery/index.d.ts +1 -0
  173. package/dist/src/dataHooks/useColTypesQuery/useColTypesQuery.d.ts +4 -0
  174. package/dist/src/dataHooks/useColsQuery/index.d.ts +1 -0
  175. package/dist/src/dataHooks/useColsQuery/useColsQuery.d.ts +7 -0
  176. package/dist/src/dataHooks/useConceptQuery/index.d.ts +1 -0
  177. package/dist/src/dataHooks/useConceptQuery/useConceptQuery.d.ts +7 -0
  178. package/dist/src/dataHooks/useConceptRelationTypeQuery/index.d.ts +1 -0
  179. package/dist/src/dataHooks/useConceptRelationTypeQuery/useConceptRelationTypeQuery.d.ts +4 -0
  180. package/dist/src/dataHooks/useConceptSetTypeQuery/index.d.ts +1 -0
  181. package/dist/src/dataHooks/useConceptSetTypeQuery/useConceptSetTypeQuery.d.ts +4 -0
  182. package/dist/src/dataHooks/useConceptSetsQuery/index.d.ts +1 -0
  183. package/dist/src/dataHooks/useConceptSetsQuery/useConceptSetsQuery.d.ts +6 -0
  184. package/dist/src/dataHooks/useDataCollectionSetMembersQuery/index.d.ts +1 -0
  185. package/dist/src/dataHooks/useDataCollectionSetMembersQuery/useDataCollectionSetMembersQuery.d.ts +3 -0
  186. package/dist/src/dataHooks/useDataCollectionsQuery/index.d.ts +1 -0
  187. package/dist/src/dataHooks/useDataCollectionsQuery/useDataCollectionsQuery.d.ts +6 -0
  188. package/dist/src/dataHooks/useDimTypesQuery/index.d.ts +1 -0
  189. package/dist/src/dataHooks/useDimTypesQuery/useDimTypesQuery.d.ts +4 -0
  190. package/dist/src/dataHooks/useDimsQuery/index.d.ts +1 -0
  191. package/dist/src/dataHooks/useDimsQuery/useDimsQuery.d.ts +7 -0
  192. package/dist/src/dataHooks/useDiseasesQuery/index.d.ts +1 -0
  193. package/dist/src/dataHooks/useDiseasesQuery/useDiseasesQuery.d.ts +6 -0
  194. package/dist/src/dataHooks/useEtiologicalAgentsQuery/index.d.ts +1 -0
  195. package/dist/src/dataHooks/useEtiologicalAgentsQuery/useEtiologicalAgentsQuery.d.ts +6 -0
  196. package/dist/src/dataHooks/useGeneticDistanceProtocolsQuery/index.d.ts +1 -0
  197. package/dist/src/dataHooks/useGeneticDistanceProtocolsQuery/useGeneticDistanceProtocolsQuery.d.ts +5 -0
  198. package/dist/src/dataHooks/useOrganizationAccessCasePoliciesQuery/index.d.ts +1 -0
  199. package/dist/src/dataHooks/useOrganizationAccessCasePoliciesQuery/useOrganizationAccessCasePoliciesQuery.d.ts +3 -0
  200. package/dist/src/dataHooks/useOrganizationShareCasePoliciesQuery/index.d.ts +1 -0
  201. package/dist/src/dataHooks/useOrganizationShareCasePoliciesQuery/useOrganizationShareCasePoliciesQuery.d.ts +3 -0
  202. package/dist/src/dataHooks/useRefColsQuery/index.d.ts +1 -0
  203. package/dist/src/dataHooks/useRefColsQuery/useRefColsQuery.d.ts +6 -0
  204. package/dist/src/dataHooks/useRefColsValidationRulesQuery/index.d.ts +1 -0
  205. package/dist/src/dataHooks/useRefColsValidationRulesQuery/useRefColsValidationRulesQuery.d.ts +3 -0
  206. package/dist/src/dataHooks/useRefDimsQuery/index.d.ts +1 -0
  207. package/dist/src/dataHooks/useRefDimsQuery/useRefDimsQuery.d.ts +6 -0
  208. package/dist/src/dataHooks/useRegionQuery/index.d.ts +1 -0
  209. package/dist/src/dataHooks/useRegionQuery/useRegionQuery.d.ts +7 -0
  210. package/dist/src/dataHooks/useRegionRelationTypeQuery/index.d.ts +1 -0
  211. package/dist/src/dataHooks/useRegionRelationTypeQuery/useRegionRelationTypeQuery.d.ts +4 -0
  212. package/dist/src/dataHooks/useRegionSetsQuery/index.d.ts +1 -0
  213. package/dist/src/dataHooks/useRegionSetsQuery/useRegionSetsQuery.d.ts +6 -0
  214. package/dist/src/dataHooks/useSequencingProtocolsQuery/index.d.ts +1 -0
  215. package/dist/src/dataHooks/useSequencingProtocolsQuery/useSequencingProtocolsQuery.d.ts +6 -0
  216. package/dist/src/dataHooks/useTreeAlgorithmCodesQuery/index.d.ts +1 -0
  217. package/dist/src/dataHooks/useTreeAlgorithmCodesQuery/useTreeAlgorithmCodesQuery.d.ts +4 -0
  218. package/dist/src/dataHooks/useUserAccessCasePoliciesQuery/index.d.ts +1 -0
  219. package/dist/src/dataHooks/useUserAccessCasePoliciesQuery/useUserAccessCasePoliciesQuery.d.ts +3 -0
  220. package/dist/src/dataHooks/useUserEffectiveRightsQuery/index.d.ts +1 -0
  221. package/dist/src/dataHooks/useUserEffectiveRightsQuery/useUserEffectiveRightsQuery.d.ts +16 -0
  222. package/dist/src/dataHooks/useUserShareCasePoliciesQuery/index.d.ts +1 -0
  223. package/dist/src/dataHooks/useUserShareCasePoliciesQuery/useUserShareCasePoliciesQuery.d.ts +3 -0
  224. package/dist/src/hooks/useOrganizationCasePolicyNameFactory/index.d.ts +1 -0
  225. package/dist/src/hooks/useOrganizationCasePolicyNameFactory/useOrganizationCasePolicyNameFactory.d.ts +3 -0
  226. package/dist/src/hooks/useUserCasePolicyNameFactory/index.d.ts +1 -0
  227. package/dist/src/hooks/useUserCasePolicyNameFactory/useUserCasePolicyNameFactory.d.ts +3 -0
  228. package/dist/src/index.d.ts +154 -0
  229. package/dist/src/models/caseAccess.d.ts +15 -0
  230. package/dist/src/models/config.d.ts +54 -0
  231. package/dist/src/models/epi.d.ts +185 -0
  232. package/dist/src/models/theme.d.ts +17 -0
  233. package/dist/src/models/tree.d.ts +55 -0
  234. package/dist/src/pages/CaseDbUsersAdminPage/CaseDbUsersAdminPage.d.ts +1 -0
  235. package/dist/src/pages/CaseDbUsersAdminPage/index.d.ts +1 -0
  236. package/dist/src/pages/CaseSetCategoryAdminPage/CaseSetCategoryAdminPage.d.ts +1 -0
  237. package/dist/src/pages/CaseSetCategoryAdminPage/index.d.ts +1 -0
  238. package/dist/src/pages/CaseSetStatusAdminPage/CaseSetStatusAdminPage.d.ts +1 -0
  239. package/dist/src/pages/CaseSetStatusAdminPage/index.d.ts +1 -0
  240. package/dist/src/pages/CaseTypeSetCategoriesAdminPage/CaseTypeSetCategoriesAdminPage.d.ts +1 -0
  241. package/dist/src/pages/CaseTypeSetCategoriesAdminPage/index.d.ts +1 -0
  242. package/dist/src/pages/CaseTypeSetsAdminPage/CaseTypeSetsAdminPage.d.ts +1 -0
  243. package/dist/src/pages/CaseTypeSetsAdminPage/index.d.ts +1 -0
  244. package/dist/src/pages/CaseTypesAdminPage/CaseTypesAdminPage.d.ts +1 -0
  245. package/dist/src/pages/CaseTypesAdminPage/index.d.ts +1 -0
  246. package/dist/src/pages/CasesDetailPage/CasesDetailPage.d.ts +1 -0
  247. package/dist/src/pages/CasesDetailPage/index.d.ts +1 -0
  248. package/dist/src/pages/CasesPage/CasesPage.d.ts +1 -0
  249. package/dist/src/pages/CasesPage/index.d.ts +1 -0
  250. package/dist/src/pages/ColSetsAdminPage/ColSetsAdminPage.d.ts +1 -0
  251. package/dist/src/pages/ColSetsAdminPage/index.d.ts +1 -0
  252. package/dist/src/pages/ColsAdminPage/ColsAdminPage.d.ts +1 -0
  253. package/dist/src/pages/ColsAdminPage/index.d.ts +1 -0
  254. package/dist/src/pages/ConceptRelationsAdminPage/ConceptRelationsAdminPage.d.ts +1 -0
  255. package/dist/src/pages/ConceptRelationsAdminPage/index.d.ts +1 -0
  256. package/dist/src/pages/ConceptSetsAdminPage/ConceptSetsAdminPage.d.ts +1 -0
  257. package/dist/src/pages/ConceptSetsAdminPage/index.d.ts +1 -0
  258. package/dist/src/pages/ConceptsAdminPage/ConceptsAdminPage.d.ts +1 -0
  259. package/dist/src/pages/ConceptsAdminPage/index.d.ts +1 -0
  260. package/dist/src/pages/DataCollectionSetsAdminPage/DataCollectionSetsAdminPage.d.ts +1 -0
  261. package/dist/src/pages/DataCollectionSetsAdminPage/index.d.ts +1 -0
  262. package/dist/src/pages/DataCollectionVisualizationPage/DataCollectionVisualizationPage.d.ts +1 -0
  263. package/dist/src/pages/DataCollectionVisualizationPage/index.d.ts +1 -0
  264. package/dist/src/pages/DataCollectionsAdminPage/DataCollectionsAdminPage.d.ts +1 -0
  265. package/dist/src/pages/DataCollectionsAdminPage/index.d.ts +1 -0
  266. package/dist/src/pages/DimsAdminPage/DimsAdminPage.d.ts +1 -0
  267. package/dist/src/pages/DimsAdminPage/index.d.ts +1 -0
  268. package/dist/src/pages/DiseasesAdminPage/DiseasesAdminPage.d.ts +1 -0
  269. package/dist/src/pages/DiseasesAdminPage/index.d.ts +1 -0
  270. package/dist/src/pages/EtiologicalAgentsAdminPage/EtiologicalAgentsAdminPage.d.ts +1 -0
  271. package/dist/src/pages/EtiologicalAgentsAdminPage/index.d.ts +1 -0
  272. package/dist/src/pages/EtiologiesAdminPage/EtiologiesAdminPage.d.ts +1 -0
  273. package/dist/src/pages/EtiologiesAdminPage/index.d.ts +1 -0
  274. package/dist/src/pages/EventsDetailPage/EventsDetailPage.d.ts +1 -0
  275. package/dist/src/pages/EventsDetailPage/index.d.ts +1 -0
  276. package/dist/src/pages/EventsPage/EventsPage.d.ts +1 -0
  277. package/dist/src/pages/EventsPage/index.d.ts +1 -0
  278. package/dist/src/pages/HomePage/HomePage.d.ts +1 -0
  279. package/dist/src/pages/HomePage/index.d.ts +1 -0
  280. package/dist/src/pages/OrganizationAccessCasePoliciesAdminPage/OrganizationAccessCasePoliciesAdminPage.d.ts +1 -0
  281. package/dist/src/pages/OrganizationAccessCasePoliciesAdminPage/index.d.ts +1 -0
  282. package/dist/src/pages/OrganizationShareCasePoliciesAdminPage/OrganizationShareCasePoliciesAdminPage.d.ts +1 -0
  283. package/dist/src/pages/OrganizationShareCasePoliciesAdminPage/index.d.ts +1 -0
  284. package/dist/src/pages/RefColsAdminPage/RefColsAdminPage.d.ts +1 -0
  285. package/dist/src/pages/RefColsAdminPage/index.d.ts +1 -0
  286. package/dist/src/pages/RefDimsAdminPage/RefDimsAdminPage.d.ts +1 -0
  287. package/dist/src/pages/RefDimsAdminPage/index.d.ts +1 -0
  288. package/dist/src/pages/RegionRelationsAdminPage/RegionRelationsAdminPage.d.ts +1 -0
  289. package/dist/src/pages/RegionRelationsAdminPage/index.d.ts +1 -0
  290. package/dist/src/pages/RegionSetShapesAdminPage/RegionSetShapesAdminPage.d.ts +1 -0
  291. package/dist/src/pages/RegionSetShapesAdminPage/index.d.ts +1 -0
  292. package/dist/src/pages/RegionSetsAdminPage/RegionSetsAdminPage.d.ts +1 -0
  293. package/dist/src/pages/RegionSetsAdminPage/index.d.ts +1 -0
  294. package/dist/src/pages/RegionsAdminPage/RegionsAdminPage.d.ts +1 -0
  295. package/dist/src/pages/RegionsAdminPage/index.d.ts +1 -0
  296. package/dist/src/pages/TrendsPage/TrendsPage.d.ts +1 -0
  297. package/dist/src/pages/TrendsPage/index.d.ts +1 -0
  298. package/dist/src/pages/UploadPage/UploadPage.d.ts +1 -0
  299. package/dist/src/pages/UploadPage/index.d.ts +1 -0
  300. package/dist/src/pages/UserAccessCasePoliciesAdminPage/UserAccessCasePoliciesAdminPage.d.ts +1 -0
  301. package/dist/src/pages/UserAccessCasePoliciesAdminPage/index.d.ts +1 -0
  302. package/dist/src/pages/UserEffectiveRightsAdminPage/UserEffectiveRightsAdminPage.d.ts +1 -0
  303. package/dist/src/pages/UserEffectiveRightsAdminPage/index.d.ts +1 -0
  304. package/dist/src/pages/UserEffectiveRightsTesterAdminPage/UserEffectiveRightsTesterAdminPage.d.ts +1 -0
  305. package/dist/src/pages/UserEffectiveRightsTesterAdminPage/index.d.ts +1 -0
  306. package/dist/src/pages/UserShareCasePoliciesAdminPage/UserShareCasePoliciesAdminPage.d.ts +1 -0
  307. package/dist/src/pages/UserShareCasePoliciesAdminPage/index.d.ts +1 -0
  308. package/dist/src/routes/adminRoutes.d.ts +6 -0
  309. package/dist/src/routes/index.d.ts +2 -0
  310. package/dist/src/routes/routes.d.ts +6 -0
  311. package/dist/src/setup/index.d.ts +1 -0
  312. package/dist/src/setup/setup.d.ts +1 -0
  313. package/dist/src/stores/epiDashboardStore/epiDashboardStore.d.ts +99 -0
  314. package/dist/src/stores/epiDashboardStore/epiDashboardStoreContext.d.ts +4 -0
  315. package/dist/src/stores/epiDashboardStore/index.d.ts +2 -0
  316. package/dist/src/stores/epiUploadStore/epiUploadStore.d.ts +57 -0
  317. package/dist/src/stores/epiUploadStore/epiUploadStoreContext.d.ts +4 -0
  318. package/dist/src/stores/epiUploadStore/index.d.ts +2 -0
  319. package/dist/src/stores/userProfileStore/index.d.ts +1 -0
  320. package/dist/src/stores/userProfileStore/userProfileStore.d.ts +42 -0
  321. package/dist/src/test/lib/CaseDbDemoConfigUtil.d.ts +4 -0
  322. package/dist/src/test/lib/index.d.ts +1 -0
  323. package/dist/src/theme/demoTheme/index.d.ts +2 -0
  324. package/dist/src/utils/AbacUtil/AbacUtil.d.ts +7 -0
  325. package/dist/src/utils/AbacUtil/index.d.ts +1 -0
  326. package/dist/src/utils/CaseDbDataUtil/CaseDbDataUtil.d.ts +30 -0
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  328. package/dist/src/utils/CaseDbDownloadUtil/CaseDbDownloadUtil.d.ts +17 -0
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  330. package/dist/src/utils/CaseDbTableUtil/CaseDbTableUtil.d.ts +6 -0
  331. package/dist/src/utils/CaseDbTableUtil/index.d.ts +1 -0
  332. package/dist/src/utils/CaseSelectionUtil/CaseSelectionUtil.d.ts +8 -0
  333. package/dist/src/utils/CaseSelectionUtil/index.d.ts +1 -0
  334. package/dist/src/utils/CaseSetUtil/CaseSetUtil.d.ts +4 -0
  335. package/dist/src/utils/CaseSetUtil/index.d.ts +1 -0
  336. package/dist/src/utils/CaseTypeUtil/CaseTypeUtil.d.ts +38 -0
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  338. package/dist/src/utils/CaseUtil/CaseUtil.d.ts +25 -0
  339. package/dist/src/utils/CaseUtil/index.d.ts +1 -0
  340. package/dist/src/utils/DashboardUtil/DashboardUtil.d.ts +9 -0
  341. package/dist/src/utils/DashboardUtil/index.d.ts +1 -0
  342. package/dist/src/utils/DataSetUtil/DataSetUtil.d.ts +17 -0
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  344. package/dist/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.d.ts +29 -0
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  346. package/dist/src/utils/EpiCurveUtil/EpiCurveUtil.d.ts +28 -0
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  348. package/dist/src/utils/EpiFilterUtil/EpiFilterUtil.d.ts +9 -0
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  350. package/dist/src/utils/EpiLineListUtil/EpiLineListUtil.d.ts +5 -0
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  352. package/dist/src/utils/EpiMapUtil/EpiMapUtil.d.ts +25 -0
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  354. package/dist/src/utils/EpiTreeUtil/EpiTreeUtil.d.ts +481 -0
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  356. package/dist/src/utils/EpiUploadUtil/EpiUploadUtil.d.ts +110 -0
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  358. package/dist/src/utils/FileUtil/FileUtil.d.ts +5 -0
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  360. package/dist/src/utils/NewickUtil/NewickUtil.d.ts +5 -0
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  362. package/package.json +45 -45
@@ -0,0 +1,54 @@
1
+ import { TFunction } from 'i18next';
2
+ import { CaseDbColType } from '@gen-epix/api-casedb';
3
+ import { ConfigBase } from '@gen-epix/ui';
4
+ import { EPI_ZONE, EpiDashboardLayoutConfig } from './epi';
5
+ export interface CaseDbConfig extends ConfigBase {
6
+ epi: {
7
+ ALLOWED_COL_TYPES_FOR_STRATIFICATION: CaseDbColType[];
8
+ DATA_MISSING_CHARACTER: string;
9
+ DOWNLOAD_SECTION_ORDER: EPI_ZONE[];
10
+ INITIAL_NUM_VISIBLE_ATTRIBUTES_IN_CASE_SUMMARY: number;
11
+ SEQDB_MAX_STORED_DISTANCE_FALLBACK: number;
12
+ STRATIFICATION_COLOR_ITEM_MISSING: string;
13
+ STRATIFICATION_COLORS: string[];
14
+ };
15
+ epiDashboard: {
16
+ LAYOUTS: EpiDashboardLayoutConfig[];
17
+ MIN_PANEL_HEIGHT: number;
18
+ MIN_PANEL_WIDTH: number;
19
+ };
20
+ epiLineList: {
21
+ CASE_SET_MEMBERS_FETCH_DEBOUNCE_DELAY_MS: number;
22
+ MAX_COLUMN_WIDTH: number;
23
+ REQUIRED_EXTRA_CELL_PADDING_TO_FIT_CONTENT: number;
24
+ TABLE_ROW_HEIGHT: number;
25
+ };
26
+ epiMap: {
27
+ MIN_PIE_CHART_RADIUS: number;
28
+ };
29
+ epiTree: {
30
+ ANCESTOR_DOT_RADIUS: number;
31
+ HEADER_HEIGHT: number;
32
+ INITIAL_UNLINKED_ZOOM_LEVEL: number;
33
+ LEAF_DOT_RADIUS: number;
34
+ LINKED_SCROLL_DEBOUNCE_DELAY_MS: number;
35
+ MAX_SCALE_WIDTH_PX: number;
36
+ MAX_ZOOM_LEVEL: number;
37
+ MAX_ZOOM_SPEED: number;
38
+ MIN_SCALE_WIDTH_PX: number;
39
+ MIN_ZOOM_LEVEL: number;
40
+ MIN_ZOOM_SPEED: number;
41
+ MINIMUM_DISTANCE_PERCENTAGE_TO_SHOW_LABEL: number;
42
+ PANNING_THRESHOLD: number;
43
+ REGULAR_FILL_COLOR_SUPPORT_LINE: string;
44
+ SCALE_INCREMENTS: number[];
45
+ TAKING_LONGER_TIMEOUT_MS: number;
46
+ TREE_PADDING: number;
47
+ };
48
+ trends: {
49
+ homePage: {
50
+ getSinceDate: () => string;
51
+ getSinceLabel: (t: TFunction<'translation', undefined>) => string;
52
+ };
53
+ };
54
+ }
@@ -0,0 +1,185 @@
1
+ import { CaseDbCaseUploadResult, CaseDbCol, CaseDbColType, CaseDbConcept, CaseDbConceptSet, CaseDbDataCollection, CaseDbGeneticDistanceProtocol, CaseDbOrganization, CaseDbRefCol, CaseDbRegion, CaseDbRegionSet, CaseDbTreeAlgorithm } from '@gen-epix/api-casedb';
2
+ export declare enum EPI_UPLOAD_STEP {
3
+ SELECT_FILE = 0,
4
+ MAP_COLUMNS = 1,
5
+ VALIDATE = 2,
6
+ SELECT_SEQUENCE_FILES = 3,
7
+ MAP_SEQUENCES = 4,
8
+ CREATE_CASES = 5
9
+ }
10
+ export declare enum EPI_ZONE {
11
+ EPI_CURVE = "EPI_CURVE",
12
+ LEGENDA = "LEGENDA",
13
+ LINE_LIST = "LINE_LIST",
14
+ MAP = "MAP",
15
+ TREE = "TREE"
16
+ }
17
+ export declare enum FILTER_TYPE {
18
+ DATE = "DATE",
19
+ GEO = "GEO",
20
+ MULTI_SELECT = "MULTI_SELECT",
21
+ NUMBER = "NUMBER",
22
+ STRING = "STRING"
23
+ }
24
+ export declare enum STRATIFICATION_MODE {
25
+ FIELD = "FIELD",
26
+ SELECTION = "SELECTION"
27
+ }
28
+ export declare enum STRATIFICATION_SELECTED {
29
+ SELECTED = "SELECTED",
30
+ UNSELECTED = "UNSELECTED"
31
+ }
32
+ export type CaseTypeRowValue = {
33
+ full: string;
34
+ isMissing?: boolean;
35
+ long: string;
36
+ raw: string;
37
+ short: string;
38
+ };
39
+ export type CaseUploadResultWithGeneratedId = {
40
+ generatedId: string;
41
+ } & CaseDbCaseUploadResult;
42
+ export type EpiCaseHasCaseSet = {
43
+ [caseId: string]: boolean;
44
+ };
45
+ export type EpiDashboardLayout = [EpiDashboardLayoutPanelOrientation, ...EpiDashboardLayoutFirstAxisPanel[]];
46
+ export type EpiDashboardLayoutConfig = {
47
+ layouts: EpiDashboardLayout[];
48
+ zones: EPI_ZONE[];
49
+ };
50
+ export type EpiDashboardLayoutFirstAxisPanel = [100 | 30 | 50 | 70, ...EpiDashboardLayoutSecondAxisPanel[]];
51
+ export type EpiDashboardLayoutPanelOrientation = 'horizontal' | 'vertical';
52
+ export type EpiDashboardLayoutSecondAxisPanel = [100 | 30 | 50 | 70, EPI_ZONE];
53
+ export type EpiDashboardLayoutUserConfig = {
54
+ arrangement: number;
55
+ zones: {
56
+ [EPI_ZONE.EPI_CURVE]: boolean;
57
+ [EPI_ZONE.LINE_LIST]: boolean;
58
+ [EPI_ZONE.MAP]: boolean;
59
+ [EPI_ZONE.TREE]: boolean;
60
+ };
61
+ };
62
+ export type EpiData = {
63
+ conceptsById: {
64
+ [id: string]: CaseDbConcept;
65
+ };
66
+ conceptsBySetId: {
67
+ [id: string]: CaseDbConcept[];
68
+ };
69
+ conceptSets: {
70
+ [id: string]: CaseDbConceptSet;
71
+ };
72
+ conceptsIdsBySetId: {
73
+ [id: string]: string[];
74
+ };
75
+ organizations: CaseDbOrganization[];
76
+ organizationsById: {
77
+ [id: string]: CaseDbOrganization;
78
+ };
79
+ regionsById: {
80
+ [id: string]: CaseDbRegion;
81
+ };
82
+ regionsByRegionSetId: {
83
+ [id: string]: CaseDbRegion[];
84
+ };
85
+ regionSets: {
86
+ [id: string]: CaseDbRegionSet;
87
+ };
88
+ treeAlgorithms: CaseDbTreeAlgorithm[];
89
+ userDataCollections: CaseDbDataCollection[];
90
+ userDataCollectionsById: {
91
+ [id: string]: CaseDbDataCollection;
92
+ };
93
+ };
94
+ export type EpiLineListRangeSubjectValue = {
95
+ endIndex: number;
96
+ startIndex: number;
97
+ };
98
+ export type EpiLinkedScrollSubjectValue = {
99
+ origin: HTMLElement;
100
+ position: number;
101
+ };
102
+ export type EpiUploadCompleteColStats = {
103
+ readsColumns: CaseDbCol[];
104
+ sampleIdColumns: CaseDbCol[];
105
+ sequenceColumns: CaseDbCol[];
106
+ writableColumns: CaseDbCol[];
107
+ };
108
+ /**
109
+ * File assignment result for genetic file uploads
110
+ */
111
+ export interface EpiUploadFileColumnAssignment {
112
+ col: CaseDbCol;
113
+ file: File;
114
+ }
115
+ export type EpiUploadMappedColumn = {
116
+ col: CaseDbCol;
117
+ isCaseIdColumn?: boolean;
118
+ isCol?: boolean;
119
+ isSampleIdColumn?: boolean;
120
+ originalIndex: number;
121
+ originalLabel: string;
122
+ sampleIdentifierIssuerId?: string;
123
+ };
124
+ export type EpiUploadMappedColumnsFormFields = {
125
+ [key: string]: string;
126
+ };
127
+ export type EpiUploadSequenceMapping = {
128
+ [caseId: string]: EpiUploadSequenceMappingForCaseId;
129
+ };
130
+ export type EpiUploadSequenceMappingForCaseId = {
131
+ readsFileNames: {
132
+ [colId: string]: {
133
+ fwd: string;
134
+ rev: string;
135
+ };
136
+ };
137
+ sequenceFileNames: {
138
+ [colId: string]: string;
139
+ };
140
+ };
141
+ export type EpiUploadTableRow = {
142
+ [key: string]: string;
143
+ };
144
+ export type FindSimilarCasesResult = {
145
+ colId: string;
146
+ distance: number;
147
+ key: string;
148
+ originalCaseIds: string[];
149
+ similarCaseIds: string[];
150
+ };
151
+ export type Highlighting = {
152
+ caseIds: string[];
153
+ origin: EPI_ZONE;
154
+ };
155
+ export type Stratification = {
156
+ caseIdColors: {
157
+ [key: string]: string;
158
+ };
159
+ col?: CaseDbCol;
160
+ legendaItems?: StratificationLegendaItem[];
161
+ legendaItemsByColor?: {
162
+ [key: string]: StratificationLegendaItem;
163
+ };
164
+ legendaItemsByValue?: {
165
+ [key: string]: StratificationLegendaItem;
166
+ };
167
+ mode: STRATIFICATION_MODE;
168
+ };
169
+ export type StratificationLegendaItem = {
170
+ caseIds: string[];
171
+ color: string;
172
+ columnType?: CaseDbColType;
173
+ rowValue: CaseTypeRowValue;
174
+ };
175
+ export type TreeConfiguration = {
176
+ col: CaseDbCol;
177
+ computedId: string;
178
+ geneticDistanceProtocol: CaseDbGeneticDistanceProtocol;
179
+ refCol: CaseDbRefCol;
180
+ treeAlgorithm: CaseDbTreeAlgorithm;
181
+ };
182
+ export type TreeFocus = {
183
+ leafs: string[];
184
+ root: string;
185
+ };
@@ -0,0 +1,17 @@
1
+ import { GenEpixUiTheme } from '@gen-epix/ui';
2
+ export interface GenEpixCaseDbUiTheme extends GenEpixUiTheme {
3
+ 'gen-epix-ui-casedb': {
4
+ lineList: {
5
+ font: string;
6
+ fontVariationSettings?: string;
7
+ };
8
+ tree: {
9
+ color: string;
10
+ dimFn: (color: string) => string;
11
+ font: string;
12
+ fontVariationSettings?: string;
13
+ supportLineColorLinked: string;
14
+ supportLineColorUnlinked: string;
15
+ };
16
+ };
17
+ }
@@ -0,0 +1,55 @@
1
+ import { default as Decimal } from 'decimal.js';
2
+ export type TreeAssembly = {
3
+ ancestorNodes: Array<{
4
+ nodeNames: string[];
5
+ shape: Path2D;
6
+ }>;
7
+ distanceTexts: Array<{
8
+ nodeNames: string[];
9
+ text: string;
10
+ x: number;
11
+ y: number;
12
+ }>;
13
+ horizontalAncestorTreeLines: Array<{
14
+ nodeNames: string[];
15
+ shape: Path2D;
16
+ }>;
17
+ horizontalLinePathPropertiesMap: TreeAssemblyPathPropertiesMap;
18
+ leafNodes: Array<{
19
+ nodeName: string;
20
+ shape: Path2D;
21
+ }>;
22
+ leafTreeLines: Array<{
23
+ nodeName: string;
24
+ shape: Path2D;
25
+ }>;
26
+ nodePathPropertiesMap: TreeAssemblyPathPropertiesMap;
27
+ supportLines: Array<{
28
+ fromX: number;
29
+ fromY: number;
30
+ nodeName: string;
31
+ toX: number;
32
+ toY: number;
33
+ }>;
34
+ verticalAncestorTreeLines: Array<{
35
+ nodeNames: string[];
36
+ shape: Path2D;
37
+ }>;
38
+ verticalLinePathPropertiesMap: TreeAssemblyPathPropertiesMap;
39
+ };
40
+ export type TreeNode = {
41
+ address?: string;
42
+ branchLength?: Decimal;
43
+ children?: TreeNode[];
44
+ maxBranchLength?: Decimal;
45
+ name?: string;
46
+ size?: number;
47
+ subTreeLeaveNames?: string[];
48
+ subTreeNames?: string[];
49
+ };
50
+ export type TreePathProperties = {
51
+ subTreeLeaveNames: string[];
52
+ treeNode?: TreeNode;
53
+ };
54
+ type TreeAssemblyPathPropertiesMap = Map<Path2D, TreePathProperties>;
55
+ export {};
@@ -0,0 +1 @@
1
+ export declare const CaseDbUsersAdminPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './CaseDbUsersAdminPage';
@@ -0,0 +1 @@
1
+ export declare const CaseSetCategoryAdminPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './CaseSetCategoryAdminPage';
@@ -0,0 +1 @@
1
+ export declare const CaseSetStatusAdminPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './CaseSetStatusAdminPage';
@@ -0,0 +1 @@
1
+ export declare const CaseTypeSetCategoriesAdminPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './CaseTypeSetCategoriesAdminPage';
@@ -0,0 +1 @@
1
+ export declare const CaseTypeSetsAdminPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './CaseTypeSetsAdminPage';
@@ -0,0 +1 @@
1
+ export declare const CaseTypesAdminPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './CaseTypesAdminPage';
@@ -0,0 +1 @@
1
+ export declare const CasesDetailPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './CasesDetailPage';
@@ -0,0 +1 @@
1
+ export declare const CasesPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './CasesPage';
@@ -0,0 +1 @@
1
+ export declare const ColSetsAdminPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './ColSetsAdminPage';
@@ -0,0 +1 @@
1
+ export declare const ColsAdminPage: () => import("react/jsx-runtime").JSX.Element;
@@ -0,0 +1 @@
1
+ export * from './ColsAdminPage';
@@ -0,0 +1 @@
1
+ export declare const ConceptRelationsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './ConceptRelationsAdminPage';
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+ export declare const ConceptSetsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './ConceptSetsAdminPage';
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+ export declare const ConceptsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './ConceptsAdminPage';
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+ export declare const DataCollectionSetsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './DataCollectionSetsAdminPage';
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+ export declare const DataCollectionVisualizationPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './DataCollectionVisualizationPage';
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+ export declare const DataCollectionsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './DataCollectionsAdminPage';
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+ export declare const DimsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './DimsAdminPage';
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+ export declare const DiseasesAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './DiseasesAdminPage';
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+ export declare const EtiologicalAgentsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './EtiologicalAgentsAdminPage';
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+ export declare const EtiologiesAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './EtiologiesAdminPage';
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+ export declare const EventsDetailPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './EventsDetailPage';
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+ export declare const EventsPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './EventsPage';
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+ export declare const HomePage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './HomePage';
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+ export declare const OrganizationAccessCasePoliciesAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './OrganizationAccessCasePoliciesAdminPage';
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+ export declare const OrganizationShareCasePoliciesAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './OrganizationShareCasePoliciesAdminPage';
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+ export declare const RefColsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './RefColsAdminPage';
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+ export declare const RefDimsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './RefDimsAdminPage';
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+ export declare const RegionRelationsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './RegionRelationsAdminPage';
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+ export declare const RegionSetShapesAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './RegionSetShapesAdminPage';
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+ export declare const RegionSetsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './RegionSetsAdminPage';
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+ export declare const RegionsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './RegionsAdminPage';
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+ export declare const TrendsPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './TrendsPage';
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+ export declare const UploadPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './UploadPage';
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+ export declare const UserAccessCasePoliciesAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './UserAccessCasePoliciesAdminPage';
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+ export declare const UserEffectiveRightsAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './UserEffectiveRightsAdminPage';
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+ export declare const UserEffectiveRightsTesterAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './UserEffectiveRightsTesterAdminPage';
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+ export declare const UserShareCasePoliciesAdminPage: () => import("react/jsx-runtime").JSX.Element;
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+ export * from './UserShareCasePoliciesAdminPage';
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+ import { CaseDbApiPermission } from '@gen-epix/api-casedb';
2
+ import { MyNonIndexRouteObject } from '@gen-epix/ui';
3
+ import { CommonDbApiPermission } from '@gen-epix/api-commondb';
4
+ type RoutePermission = CaseDbApiPermission | CommonDbApiPermission;
5
+ export declare const createAdminRoutes: () => MyNonIndexRouteObject<RoutePermission>[];
6
+ export {};
@@ -0,0 +1,2 @@
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+ export * from './adminRoutes';
2
+ export * from './routes';
@@ -0,0 +1,6 @@
1
+ import { CaseDbApiPermission } from '@gen-epix/api-casedb';
2
+ import { CommonDbApiPermission } from '@gen-epix/api-commondb';
3
+ import { MyNonIndexRouteObject } from '@gen-epix/ui';
4
+ type RoutePermission = CaseDbApiPermission | CommonDbApiPermission;
5
+ export declare const createRoutes: (adminRoutes?: MyNonIndexRouteObject<RoutePermission>[]) => MyNonIndexRouteObject<RoutePermission>[];
6
+ export {};
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+ export * from './setup';
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+ export declare const setupCaseDb: () => void;