@galaxy-tool-util/schema 1.14.0 → 1.15.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.d.ts +1 -1
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +1 -1
- package/dist/index.js.map +1 -1
- package/dist/user-tool-source/schema.generated.d.ts +1203 -266
- package/dist/user-tool-source/schema.generated.d.ts.map +1 -1
- package/dist/user-tool-source/schema.generated.js +1522 -367
- package/dist/user-tool-source/schema.generated.js.map +1 -1
- package/dist/workflow/index.d.ts +1 -1
- package/dist/workflow/index.d.ts.map +1 -1
- package/dist/workflow/index.js +1 -1
- package/dist/workflow/index.js.map +1 -1
- package/dist/workflow/input-parameter.d.ts +280 -0
- package/dist/workflow/input-parameter.d.ts.map +1 -0
- package/dist/workflow/input-parameter.js +38 -0
- package/dist/workflow/input-parameter.js.map +1 -0
- package/dist/workflow/lint.d.ts.map +1 -1
- package/dist/workflow/lint.js +156 -50
- package/dist/workflow/lint.js.map +1 -1
- package/dist/workflow/mermaid.d.ts.map +1 -1
- package/dist/workflow/mermaid.js +1 -0
- package/dist/workflow/mermaid.js.map +1 -1
- package/dist/workflow/normalized/native.js +5 -4
- package/dist/workflow/normalized/native.js.map +1 -1
- package/dist/workflow/normalized/toFormat2.d.ts +1 -0
- package/dist/workflow/normalized/toFormat2.d.ts.map +1 -1
- package/dist/workflow/normalized/toFormat2.js +24 -2
- package/dist/workflow/normalized/toFormat2.js.map +1 -1
- package/dist/workflow/normalized/toNative.d.ts +3 -1
- package/dist/workflow/normalized/toNative.d.ts.map +1 -1
- package/dist/workflow/normalized/toNative.js +32 -11
- package/dist/workflow/normalized/toNative.js.map +1 -1
- package/dist/workflow/raw/gxformat2-draft.d.ts +67 -9
- package/dist/workflow/raw/gxformat2-draft.d.ts.map +1 -1
- package/dist/workflow/raw/gxformat2-draft.effect.d.ts +1073 -161
- package/dist/workflow/raw/gxformat2-draft.effect.d.ts.map +1 -1
- package/dist/workflow/raw/gxformat2-draft.effect.js +184 -120
- package/dist/workflow/raw/gxformat2-draft.effect.js.map +1 -1
- package/dist/workflow/raw/gxformat2-draft.js +6 -0
- package/dist/workflow/raw/gxformat2-draft.js.map +1 -1
- package/dist/workflow/raw/gxformat2.d.ts +67 -9
- package/dist/workflow/raw/gxformat2.d.ts.map +1 -1
- package/dist/workflow/raw/gxformat2.effect.d.ts +591 -143
- package/dist/workflow/raw/gxformat2.effect.d.ts.map +1 -1
- package/dist/workflow/raw/gxformat2.effect.js +169 -105
- package/dist/workflow/raw/gxformat2.effect.js.map +1 -1
- package/dist/workflow/raw/gxformat2.js +6 -0
- package/dist/workflow/raw/gxformat2.js.map +1 -1
- package/dist/workflow/raw/native.d.ts +14 -0
- package/dist/workflow/raw/native.d.ts.map +1 -1
- package/dist/workflow/raw/native.effect.d.ts +45 -30
- package/dist/workflow/raw/native.effect.d.ts.map +1 -1
- package/dist/workflow/raw/native.effect.js +40 -26
- package/dist/workflow/raw/native.effect.js.map +1 -1
- package/dist/workflow/raw/native.js.map +1 -1
- package/dist/workflow/schema_rules.yml +9 -0
- package/dist/workflow/semantic-validators.d.ts.map +1 -1
- package/dist/workflow/semantic-validators.js +17 -8
- package/dist/workflow/semantic-validators.js.map +1 -1
- package/dist/workflow/strict-checks.d.ts.map +1 -1
- package/dist/workflow/strict-checks.js +2 -3
- package/dist/workflow/strict-checks.js.map +1 -1
- package/dist/workflow/validators.d.ts +7 -4
- package/dist/workflow/validators.d.ts.map +1 -1
- package/dist/workflow/validators.js +20 -9
- package/dist/workflow/validators.js.map +1 -1
- package/package.json +1 -1
|
@@ -16,7 +16,7 @@ export declare const PrimitiveTypeSchema: Schema.Literal<["null", "boolean", "in
|
|
|
16
16
|
export type PrimitiveType = typeof PrimitiveTypeSchema.Type;
|
|
17
17
|
/**
|
|
18
18
|
* Extends primitive types with the native Galaxy concepts such as datasets and collections.
|
|
19
|
-
Normalized gxformat2 workflow input declaration spellings are ``data``, ``collection``, ``string``, ``int``, ``float``, and ``
|
|
19
|
+
Normalized gxformat2 workflow input declaration spellings are ``data``, ``collection``, ``string``, ``int``, ``float``, ``boolean``, ``color``, and ``directory_uri``. Other spellings are accepted as compatibility aliases on import but normalized gxformat2 output emits the normalized spellings.
|
|
20
20
|
data: one Galaxy dataset input. Native Galaxy ``data_input`` converts to this spelling.
|
|
21
21
|
File: accepted alias for ``data``, but normalized gxformat2 output emits ``data``. Note: workflow **test job** YAML uses ``type: File`` to mean 'stage this file as test input data', which is a separate concept from workflow input declaration.
|
|
22
22
|
collection: one Galaxy dataset collection input. Native Galaxy ``data_collection_input`` converts to this spelling.
|
|
@@ -24,8 +24,10 @@ string: normalized gxformat2 spelling for native Galaxy text workflow parameters
|
|
|
24
24
|
text: accepted alias for ``string`` because native Galaxy parameter state and Galaxy tool XML terminology use ``text``.
|
|
25
25
|
int: normalized gxformat2 spelling for native Galaxy integer workflow parameters.
|
|
26
26
|
integer: accepted alias for ``int`` because native Galaxy parameter state and Galaxy tool XML terminology use ``integer``.
|
|
27
|
+
color: native Galaxy color workflow parameter; the value is a color string such as ``#ff0000``.
|
|
28
|
+
directory_uri: native Galaxy directory URI workflow parameter; the value is a URI string such as ``s3://bucket/path/``.
|
|
27
29
|
*/
|
|
28
|
-
export declare const GalaxyTypeSchema: Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>;
|
|
30
|
+
export declare const GalaxyTypeSchema: Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>;
|
|
29
31
|
export type GalaxyType = typeof GalaxyTypeSchema.Type;
|
|
30
32
|
/**
|
|
31
33
|
* Module types used by Galaxy steps. Galaxy's native format allows additional types such as data_input, data_input_collection, and parameter_type
|
|
@@ -207,25 +209,6 @@ export declare const OutputParameterSchema: Schema.Struct<{
|
|
|
207
209
|
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
208
210
|
}>;
|
|
209
211
|
export type OutputParameter = typeof OutputParameterSchema.Type;
|
|
210
|
-
/**
|
|
211
|
-
* Describe an output parameter of a workflow. The parameter must be
|
|
212
|
-
connected to one parameter defined in the workflow that
|
|
213
|
-
will provide the value of the output parameter. It is legal to
|
|
214
|
-
connect a WorkflowInputParameter to a WorkflowOutputParameter.
|
|
215
|
-
*/
|
|
216
|
-
export declare const WorkflowOutputParameterSchema: Schema.Struct<{
|
|
217
|
-
/** The unique identifier for this object. */
|
|
218
|
-
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
219
|
-
/** A short, human-readable label of this object. */
|
|
220
|
-
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
221
|
-
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
222
|
-
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
223
|
-
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
224
|
-
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
225
|
-
/** Specify valid types of data that may be assigned to this parameter. */
|
|
226
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
227
|
-
}>;
|
|
228
|
-
export type WorkflowOutputParameter = typeof WorkflowOutputParameterSchema.Type;
|
|
229
212
|
/**
|
|
230
213
|
* This field specifies the location of the step's node when rendered in the workflow editor.
|
|
231
214
|
*/
|
|
@@ -263,10 +246,19 @@ export declare const BaseInputParameterSchema: Schema.Struct<{
|
|
|
263
246
|
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
264
247
|
}>;
|
|
265
248
|
export type BaseInputParameter = typeof BaseInputParameterSchema.Type;
|
|
249
|
+
export declare const MinMaxSchema: Schema.Struct<{
|
|
250
|
+
/** Minimum allowed value (inclusive). */
|
|
251
|
+
min: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
252
|
+
/** Maximum allowed value (inclusive). */
|
|
253
|
+
max: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
254
|
+
}>;
|
|
255
|
+
export type MinMax = typeof MinMaxSchema.Type;
|
|
266
256
|
/**
|
|
267
|
-
* A
|
|
257
|
+
* A scalar integer workflow parameter. Normalized gxformat2 output uses
|
|
258
|
+
``type: int``. ``type: integer`` is accepted for compatibility with native
|
|
259
|
+
Galaxy parameter state and Galaxy tool XML terminology.
|
|
268
260
|
*/
|
|
269
|
-
export declare const
|
|
261
|
+
export declare const WorkflowIntegerParameterSchema: Schema.Struct<{
|
|
270
262
|
/** The unique identifier for this object. */
|
|
271
263
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
272
264
|
/** A short, human-readable label of this object. */
|
|
@@ -281,11 +273,13 @@ export declare const WorkflowBooleanParameterSchema: Schema.Struct<{
|
|
|
281
273
|
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
282
274
|
left: typeof Schema.Number;
|
|
283
275
|
}>]>>;
|
|
284
|
-
/** Must be ``
|
|
285
|
-
type: Schema.Literal<["
|
|
276
|
+
/** Must be ``integer`` or ``int``. */
|
|
277
|
+
type: Schema.Literal<["integer", "int"]>;
|
|
278
|
+
min: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
279
|
+
max: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
286
280
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
287
281
|
}>;
|
|
288
|
-
export type
|
|
282
|
+
export type WorkflowIntegerParameter = typeof WorkflowIntegerParameterSchema.Type;
|
|
289
283
|
export declare const BaseDataParameterSchema: Schema.Struct<{
|
|
290
284
|
/** The unique identifier for this object. */
|
|
291
285
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -306,50 +300,6 @@ export declare const BaseDataParameterSchema: Schema.Struct<{
|
|
|
306
300
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
307
301
|
}>;
|
|
308
302
|
export type BaseDataParameter = typeof BaseDataParameterSchema.Type;
|
|
309
|
-
/**
|
|
310
|
-
* A data input parameter for a Galaxy workflow. Represents one Galaxy dataset.
|
|
311
|
-
Normalized gxformat2 output uses ``type: data``. ``type: File`` is accepted as
|
|
312
|
-
an alias, but should not be confused with workflow test job syntax where
|
|
313
|
-
``type: File`` means stage a file as test input data.
|
|
314
|
-
*/
|
|
315
|
-
export declare const WorkflowDataParameterSchema: Schema.Struct<{
|
|
316
|
-
/** The unique identifier for this object. */
|
|
317
|
-
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
318
|
-
/** A short, human-readable label of this object. */
|
|
319
|
-
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
320
|
-
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
321
|
-
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
322
|
-
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
323
|
-
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
324
|
-
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
325
|
-
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
326
|
-
top: typeof Schema.Number;
|
|
327
|
-
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
328
|
-
left: typeof Schema.Number;
|
|
329
|
-
}>]>>;
|
|
330
|
-
/** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
|
|
331
|
-
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
332
|
-
/** Specify valid types of data that may be assigned to this parameter. */
|
|
333
|
-
type: Schema.optional<Schema.Union<[Schema.Literal<["data", "File"]>, typeof Schema.Null]>>;
|
|
334
|
-
format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
|
|
335
|
-
}>;
|
|
336
|
-
export type WorkflowDataParameter = typeof WorkflowDataParameterSchema.Type;
|
|
337
|
-
/**
|
|
338
|
-
* Describes one field of a `record` collection input.
|
|
339
|
-
Used in `fields` on a `collection_type` containing `record` (e.g.
|
|
340
|
-
`record`, `list:record`, `sample_sheet:record`). Mirrors a subset of
|
|
341
|
-
the CWL `InputRecordSchema` shape that Galaxy persists on
|
|
342
|
-
`DatasetCollection.fields`.
|
|
343
|
-
*/
|
|
344
|
-
export declare const RecordFieldDefinitionSchema: Schema.Struct<{
|
|
345
|
-
/** Field name. Must equal the corresponding element identifier in the materialized record collection. */
|
|
346
|
-
name: typeof Schema.String;
|
|
347
|
-
/** Field value type. A subset of the CWL primitive types: `File`, `null`, `boolean`, `int`, `float`, `string`. May be a list to express a union (e.g. `["File", "null"]` for an optional file). */
|
|
348
|
-
type: Schema.Union<[Schema.Literal<["File", "null", "boolean", "int", "float", "string"]>, Schema.Array$<Schema.Literal<["File", "null", "boolean", "int", "float", "string"]>>]>;
|
|
349
|
-
/** Optional Galaxy datatype hint for `File`-typed fields. */
|
|
350
|
-
format: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
351
|
-
}>;
|
|
352
|
-
export type RecordFieldDefinition = typeof RecordFieldDefinitionSchema.Type;
|
|
353
303
|
/**
|
|
354
304
|
* Describes one column of a sample-sheet collection input.
|
|
355
305
|
Used in `column_definitions` on a `collection_type: sample_sheet[:<type>]`
|
|
@@ -374,6 +324,22 @@ export declare const SampleSheetColumnDefinitionSchema: Schema.Struct<{
|
|
|
374
324
|
suggestions: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number, typeof Schema.Number, typeof Schema.Boolean]>>]>>;
|
|
375
325
|
}>;
|
|
376
326
|
export type SampleSheetColumnDefinition = typeof SampleSheetColumnDefinitionSchema.Type;
|
|
327
|
+
/**
|
|
328
|
+
* Describes one field of a `record` collection input.
|
|
329
|
+
Used in `fields` on a `collection_type` containing `record` (e.g.
|
|
330
|
+
`record`, `list:record`, `sample_sheet:record`). Mirrors a subset of
|
|
331
|
+
the CWL `InputRecordSchema` shape that Galaxy persists on
|
|
332
|
+
`DatasetCollection.fields`.
|
|
333
|
+
*/
|
|
334
|
+
export declare const RecordFieldDefinitionSchema: Schema.Struct<{
|
|
335
|
+
/** Field name. Must equal the corresponding element identifier in the materialized record collection. */
|
|
336
|
+
name: typeof Schema.String;
|
|
337
|
+
/** Field value type. A subset of the CWL primitive types: `File`, `null`, `boolean`, `int`, `float`, `string`. May be a list to express a union (e.g. `["File", "null"]` for an optional file). */
|
|
338
|
+
type: Schema.Union<[Schema.Literal<["File", "null", "boolean", "int", "float", "string"]>, Schema.Array$<Schema.Literal<["File", "null", "boolean", "int", "float", "string"]>>]>;
|
|
339
|
+
/** Optional Galaxy datatype hint for `File`-typed fields. */
|
|
340
|
+
format: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
341
|
+
}>;
|
|
342
|
+
export type RecordFieldDefinition = typeof RecordFieldDefinitionSchema.Type;
|
|
377
343
|
/**
|
|
378
344
|
* A collection input parameter for a Galaxy workflow - represents a dataset collection.
|
|
379
345
|
*/
|
|
@@ -429,13 +395,6 @@ export declare const WorkflowCollectionParameterSchema: Schema.Struct<{
|
|
|
429
395
|
format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
|
|
430
396
|
}>;
|
|
431
397
|
export type WorkflowCollectionParameter = typeof WorkflowCollectionParameterSchema.Type;
|
|
432
|
-
export declare const MinMaxSchema: Schema.Struct<{
|
|
433
|
-
/** Minimum allowed value (inclusive). */
|
|
434
|
-
min: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
435
|
-
/** Maximum allowed value (inclusive). */
|
|
436
|
-
max: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
437
|
-
}>;
|
|
438
|
-
export type MinMax = typeof MinMaxSchema.Type;
|
|
439
398
|
/**
|
|
440
399
|
* A float input parameter for a Galaxy workflow.
|
|
441
400
|
*/
|
|
@@ -473,6 +432,21 @@ export declare const WorkflowTextOptionSchema: Schema.Struct<{
|
|
|
473
432
|
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
474
433
|
}>;
|
|
475
434
|
export type WorkflowTextOption = typeof WorkflowTextOptionSchema.Type;
|
|
435
|
+
/**
|
|
436
|
+
* A validator restricting values of a text workflow parameter. Persisted
|
|
437
|
+
in native Galaxy as an entry of the input step's `tool_state.validators`.
|
|
438
|
+
*/
|
|
439
|
+
export declare const WorkflowTextValidatorSchema: Schema.Struct<{
|
|
440
|
+
/** Validator type. Only `regex` is supported. */
|
|
441
|
+
type: Schema.Literal<["regex"]>;
|
|
442
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
443
|
+
expression: typeof Schema.String;
|
|
444
|
+
/** Message shown when a value fails validation. */
|
|
445
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
446
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
447
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
448
|
+
}>;
|
|
449
|
+
export type WorkflowTextValidator = typeof WorkflowTextValidatorSchema.Type;
|
|
476
450
|
/**
|
|
477
451
|
* A scalar text workflow parameter. Normalized gxformat2 output uses
|
|
478
452
|
``type: string``. ``type: text`` is accepted for compatibility with native
|
|
@@ -511,15 +485,27 @@ export declare const WorkflowTextParameterSchema: Schema.Struct<{
|
|
|
511
485
|
}>]>>]>>;
|
|
512
486
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
513
487
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
488
|
+
/** Validators applied to values supplied for this input. */
|
|
489
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
490
|
+
/** Validator type. Only `regex` is supported. */
|
|
491
|
+
type: Schema.Literal<["regex"]>;
|
|
492
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
493
|
+
expression: typeof Schema.String;
|
|
494
|
+
/** Message shown when a value fails validation. */
|
|
495
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
496
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
497
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
498
|
+
}>>]>>;
|
|
514
499
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
515
500
|
}>;
|
|
516
501
|
export type WorkflowTextParameter = typeof WorkflowTextParameterSchema.Type;
|
|
517
502
|
/**
|
|
518
|
-
* A
|
|
519
|
-
``type:
|
|
520
|
-
|
|
503
|
+
* A data input parameter for a Galaxy workflow. Represents one Galaxy dataset.
|
|
504
|
+
Normalized gxformat2 output uses ``type: data``. ``type: File`` is accepted as
|
|
505
|
+
an alias, but should not be confused with workflow test job syntax where
|
|
506
|
+
``type: File`` means stage a file as test input data.
|
|
521
507
|
*/
|
|
522
|
-
export declare const
|
|
508
|
+
export declare const WorkflowDataParameterSchema: Schema.Struct<{
|
|
523
509
|
/** The unique identifier for this object. */
|
|
524
510
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
525
511
|
/** A short, human-readable label of this object. */
|
|
@@ -534,13 +520,114 @@ export declare const WorkflowIntegerParameterSchema: Schema.Struct<{
|
|
|
534
520
|
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
535
521
|
left: typeof Schema.Number;
|
|
536
522
|
}>]>>;
|
|
537
|
-
/**
|
|
538
|
-
type: Schema.Literal<["integer", "int"]>;
|
|
539
|
-
min: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
540
|
-
max: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
523
|
+
/** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
|
|
541
524
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
525
|
+
/** Specify valid types of data that may be assigned to this parameter. */
|
|
526
|
+
type: Schema.optional<Schema.Union<[Schema.Literal<["data", "File"]>, typeof Schema.Null]>>;
|
|
527
|
+
format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
|
|
542
528
|
}>;
|
|
543
|
-
export type
|
|
529
|
+
export type WorkflowDataParameter = typeof WorkflowDataParameterSchema.Type;
|
|
530
|
+
/**
|
|
531
|
+
* A color input parameter for a Galaxy workflow. The value is a color
|
|
532
|
+
string such as ``#ff0000``.
|
|
533
|
+
*/
|
|
534
|
+
export declare const WorkflowColorParameterSchema: Schema.Struct<{
|
|
535
|
+
/** The unique identifier for this object. */
|
|
536
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
537
|
+
/** A short, human-readable label of this object. */
|
|
538
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
539
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
540
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
541
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
542
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
543
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
544
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
545
|
+
top: typeof Schema.Number;
|
|
546
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
547
|
+
left: typeof Schema.Number;
|
|
548
|
+
}>]>>;
|
|
549
|
+
/** Must be ``color``. */
|
|
550
|
+
type: Schema.Literal<["color"]>;
|
|
551
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
552
|
+
}>;
|
|
553
|
+
export type WorkflowColorParameter = typeof WorkflowColorParameterSchema.Type;
|
|
554
|
+
/**
|
|
555
|
+
* A directory URI input parameter for a Galaxy workflow. The value is a
|
|
556
|
+
URI string such as ``s3://bucket/path/``.
|
|
557
|
+
*/
|
|
558
|
+
export declare const WorkflowDirectoryUriParameterSchema: Schema.Struct<{
|
|
559
|
+
/** The unique identifier for this object. */
|
|
560
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
561
|
+
/** A short, human-readable label of this object. */
|
|
562
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
563
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
564
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
565
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
566
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
567
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
568
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
569
|
+
top: typeof Schema.Number;
|
|
570
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
571
|
+
left: typeof Schema.Number;
|
|
572
|
+
}>]>>;
|
|
573
|
+
/** Must be ``directory_uri``. */
|
|
574
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
575
|
+
/** Validators applied to values supplied for this input. */
|
|
576
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
577
|
+
/** Validator type. Only `regex` is supported. */
|
|
578
|
+
type: Schema.Literal<["regex"]>;
|
|
579
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
580
|
+
expression: typeof Schema.String;
|
|
581
|
+
/** Message shown when a value fails validation. */
|
|
582
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
583
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
584
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
585
|
+
}>>]>>;
|
|
586
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
587
|
+
}>;
|
|
588
|
+
export type WorkflowDirectoryUriParameter = typeof WorkflowDirectoryUriParameterSchema.Type;
|
|
589
|
+
/**
|
|
590
|
+
* Describe an output parameter of a workflow. The parameter must be
|
|
591
|
+
connected to one parameter defined in the workflow that
|
|
592
|
+
will provide the value of the output parameter. It is legal to
|
|
593
|
+
connect a WorkflowInputParameter to a WorkflowOutputParameter.
|
|
594
|
+
*/
|
|
595
|
+
export declare const WorkflowOutputParameterSchema: Schema.Struct<{
|
|
596
|
+
/** The unique identifier for this object. */
|
|
597
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
598
|
+
/** A short, human-readable label of this object. */
|
|
599
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
600
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
601
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
602
|
+
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
603
|
+
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
604
|
+
/** Specify valid types of data that may be assigned to this parameter. */
|
|
605
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
606
|
+
}>;
|
|
607
|
+
export type WorkflowOutputParameter = typeof WorkflowOutputParameterSchema.Type;
|
|
608
|
+
/**
|
|
609
|
+
* A boolean input parameter for a Galaxy workflow.
|
|
610
|
+
*/
|
|
611
|
+
export declare const WorkflowBooleanParameterSchema: Schema.Struct<{
|
|
612
|
+
/** The unique identifier for this object. */
|
|
613
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
614
|
+
/** A short, human-readable label of this object. */
|
|
615
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
616
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
617
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
618
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
619
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
620
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
621
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
622
|
+
top: typeof Schema.Number;
|
|
623
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
624
|
+
left: typeof Schema.Number;
|
|
625
|
+
}>]>>;
|
|
626
|
+
/** Must be ``boolean``. */
|
|
627
|
+
type: Schema.Literal<["boolean"]>;
|
|
628
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
629
|
+
}>;
|
|
630
|
+
export type WorkflowBooleanParameter = typeof WorkflowBooleanParameterSchema.Type;
|
|
544
631
|
/**
|
|
545
632
|
* The base executable type in CWL is the `Process` object defined by the
|
|
546
633
|
document. Note that the `Process` object is abstract and cannot be
|
|
@@ -691,6 +778,17 @@ export declare const ProcessSchema: Schema.Struct<{
|
|
|
691
778
|
}>]>>]>>;
|
|
692
779
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
693
780
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
781
|
+
/** Validators applied to values supplied for this input. */
|
|
782
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
783
|
+
/** Validator type. Only `regex` is supported. */
|
|
784
|
+
type: Schema.Literal<["regex"]>;
|
|
785
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
786
|
+
expression: typeof Schema.String;
|
|
787
|
+
/** Message shown when a value fails validation. */
|
|
788
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
789
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
790
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
791
|
+
}>>]>>;
|
|
694
792
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
695
793
|
}>, Schema.Struct<{
|
|
696
794
|
/** The unique identifier for this object. */
|
|
@@ -710,6 +808,53 @@ export declare const ProcessSchema: Schema.Struct<{
|
|
|
710
808
|
/** Must be ``boolean``. */
|
|
711
809
|
type: Schema.Literal<["boolean"]>;
|
|
712
810
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
811
|
+
}>, Schema.Struct<{
|
|
812
|
+
/** The unique identifier for this object. */
|
|
813
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
814
|
+
/** A short, human-readable label of this object. */
|
|
815
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
816
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
817
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
818
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
819
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
820
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
821
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
822
|
+
top: typeof Schema.Number;
|
|
823
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
824
|
+
left: typeof Schema.Number;
|
|
825
|
+
}>]>>;
|
|
826
|
+
/** Must be ``color``. */
|
|
827
|
+
type: Schema.Literal<["color"]>;
|
|
828
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
829
|
+
}>, Schema.Struct<{
|
|
830
|
+
/** The unique identifier for this object. */
|
|
831
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
832
|
+
/** A short, human-readable label of this object. */
|
|
833
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
834
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
835
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
836
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
837
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
838
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
839
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
840
|
+
top: typeof Schema.Number;
|
|
841
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
842
|
+
left: typeof Schema.Number;
|
|
843
|
+
}>]>>;
|
|
844
|
+
/** Must be ``directory_uri``. */
|
|
845
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
846
|
+
/** Validators applied to values supplied for this input. */
|
|
847
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
848
|
+
/** Validator type. Only `regex` is supported. */
|
|
849
|
+
type: Schema.Literal<["regex"]>;
|
|
850
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
851
|
+
expression: typeof Schema.String;
|
|
852
|
+
/** Message shown when a value fails validation. */
|
|
853
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
854
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
855
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
856
|
+
}>>]>>;
|
|
857
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
713
858
|
}>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
714
859
|
/** The unique identifier for this object. */
|
|
715
860
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -853,6 +998,17 @@ export declare const ProcessSchema: Schema.Struct<{
|
|
|
853
998
|
}>]>>]>>;
|
|
854
999
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
855
1000
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1001
|
+
/** Validators applied to values supplied for this input. */
|
|
1002
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
1003
|
+
/** Validator type. Only `regex` is supported. */
|
|
1004
|
+
type: Schema.Literal<["regex"]>;
|
|
1005
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
1006
|
+
expression: typeof Schema.String;
|
|
1007
|
+
/** Message shown when a value fails validation. */
|
|
1008
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1009
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
1010
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1011
|
+
}>>]>>;
|
|
856
1012
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
857
1013
|
}>, Schema.Struct<{
|
|
858
1014
|
/** The unique identifier for this object. */
|
|
@@ -872,6 +1028,53 @@ export declare const ProcessSchema: Schema.Struct<{
|
|
|
872
1028
|
/** Must be ``boolean``. */
|
|
873
1029
|
type: Schema.Literal<["boolean"]>;
|
|
874
1030
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
1031
|
+
}>, Schema.Struct<{
|
|
1032
|
+
/** The unique identifier for this object. */
|
|
1033
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1034
|
+
/** A short, human-readable label of this object. */
|
|
1035
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1036
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
1037
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
1038
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
1039
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
1040
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
1041
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
1042
|
+
top: typeof Schema.Number;
|
|
1043
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
1044
|
+
left: typeof Schema.Number;
|
|
1045
|
+
}>]>>;
|
|
1046
|
+
/** Must be ``color``. */
|
|
1047
|
+
type: Schema.Literal<["color"]>;
|
|
1048
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
1049
|
+
}>, Schema.Struct<{
|
|
1050
|
+
/** The unique identifier for this object. */
|
|
1051
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1052
|
+
/** A short, human-readable label of this object. */
|
|
1053
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1054
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
1055
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
1056
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
1057
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
1058
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
1059
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
1060
|
+
top: typeof Schema.Number;
|
|
1061
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
1062
|
+
left: typeof Schema.Number;
|
|
1063
|
+
}>]>>;
|
|
1064
|
+
/** Must be ``directory_uri``. */
|
|
1065
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
1066
|
+
/** Validators applied to values supplied for this input. */
|
|
1067
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
1068
|
+
/** Validator type. Only `regex` is supported. */
|
|
1069
|
+
type: Schema.Literal<["regex"]>;
|
|
1070
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
1071
|
+
expression: typeof Schema.String;
|
|
1072
|
+
/** Message shown when a value fails validation. */
|
|
1073
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1074
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
1075
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1076
|
+
}>>]>>;
|
|
1077
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
875
1078
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
876
1079
|
/** Defines the parameters representing the output of the process. May be used to generate and/or validate the output object. */
|
|
877
1080
|
outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
|
|
@@ -884,7 +1087,7 @@ export declare const ProcessSchema: Schema.Struct<{
|
|
|
884
1087
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
885
1088
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
886
1089
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
887
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
1090
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
888
1091
|
}>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
889
1092
|
/** The unique identifier for this object. */
|
|
890
1093
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -895,7 +1098,7 @@ export declare const ProcessSchema: Schema.Struct<{
|
|
|
895
1098
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
896
1099
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
897
1100
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
898
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
1101
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
899
1102
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
900
1103
|
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
901
1104
|
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -964,7 +1167,7 @@ export declare const WorkflowInputParameterSchema: Schema.Struct<{
|
|
|
964
1167
|
/** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
|
|
965
1168
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
966
1169
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
967
|
-
type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>>]>>;
|
|
1170
|
+
type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>>]>>;
|
|
968
1171
|
/** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
|
|
969
1172
|
collection_type: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
970
1173
|
/** Column schema for sample-sheet collection inputs. Only meaningful when `collection_type` begins with `sample_sheet`. */
|
|
@@ -1011,11 +1214,38 @@ export declare const WorkflowInputParameterSchema: Schema.Struct<{
|
|
|
1011
1214
|
}>]>>]>>;
|
|
1012
1215
|
/** For text-typed inputs - derive runtime choices from connected tool/subworkflow select inputs. */
|
|
1013
1216
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1217
|
+
/** Validators for text-typed and ``directory_uri`` inputs. See `WorkflowTextParameter.validators`. */
|
|
1218
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
1219
|
+
/** Validator type. Only `regex` is supported. */
|
|
1220
|
+
type: Schema.Literal<["regex"]>;
|
|
1221
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
1222
|
+
expression: typeof Schema.String;
|
|
1223
|
+
/** Message shown when a value fails validation. */
|
|
1224
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1225
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
1226
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1227
|
+
}>>]>>;
|
|
1014
1228
|
min: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
1015
1229
|
max: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
|
|
1016
1230
|
format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
|
|
1017
1231
|
}>;
|
|
1018
|
-
export type WorkflowInputParameter = typeof WorkflowInputParameterSchema.Type;
|
|
1232
|
+
export type WorkflowInputParameter = typeof WorkflowInputParameterSchema.Type;
|
|
1233
|
+
export declare const SinkSchema: Schema.Struct<{
|
|
1234
|
+
/** Specifies one or more workflow parameters that will provide input to the underlying step parameter. */
|
|
1235
|
+
source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
1236
|
+
}>;
|
|
1237
|
+
export type Sink = typeof SinkSchema.Type;
|
|
1238
|
+
/**
|
|
1239
|
+
* TODO:
|
|
1240
|
+
*/
|
|
1241
|
+
export declare const WorkflowStepInputSchema: Schema.Struct<{
|
|
1242
|
+
/** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`. The default must be applied prior to scattering or evaluating `va... */
|
|
1243
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
1244
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1245
|
+
source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
1246
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1247
|
+
}>;
|
|
1248
|
+
export type WorkflowStepInput = typeof WorkflowStepInputSchema.Type;
|
|
1019
1249
|
/**
|
|
1020
1250
|
* Associate an output parameter of the underlying process with a workflow
|
|
1021
1251
|
parameter. The workflow parameter (given in the `id` field) be may be used
|
|
@@ -1095,41 +1325,19 @@ export declare const BaseCommentSchema: Schema.Struct<{
|
|
|
1095
1325
|
}>;
|
|
1096
1326
|
export type BaseComment = typeof BaseCommentSchema.Type;
|
|
1097
1327
|
/**
|
|
1098
|
-
* A
|
|
1328
|
+
* A Markdown-rendered annotation in the workflow editor.
|
|
1099
1329
|
*/
|
|
1100
|
-
export declare const
|
|
1101
|
-
/** Comment type (``
|
|
1102
|
-
type: Schema.Literal<["
|
|
1103
|
-
/**
|
|
1330
|
+
export declare const MarkdownCommentSchema: Schema.Struct<{
|
|
1331
|
+
/** Comment type (``markdown``). */
|
|
1332
|
+
type: Schema.Literal<["markdown"]>;
|
|
1333
|
+
/** Markdown content. */
|
|
1104
1334
|
text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1105
|
-
/** Whether the text is displayed in bold. */
|
|
1106
|
-
bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1107
|
-
/** Whether the text is displayed in italic. */
|
|
1108
|
-
italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1109
|
-
/** Font size of the text. */
|
|
1110
|
-
text_size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
|
|
1111
|
-
position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
|
|
1112
|
-
size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
|
|
1113
|
-
color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1114
|
-
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1115
|
-
}>;
|
|
1116
|
-
export type TextComment = typeof TextCommentSchema.Type;
|
|
1117
|
-
/**
|
|
1118
|
-
* A freehand drawn line on the editor canvas.
|
|
1119
|
-
*/
|
|
1120
|
-
export declare const FreehandCommentSchema: Schema.Struct<{
|
|
1121
|
-
/** Comment type (``freehand``). */
|
|
1122
|
-
type: Schema.Literal<["freehand"]>;
|
|
1123
|
-
/** Line thickness. */
|
|
1124
|
-
thickness: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
|
|
1125
|
-
/** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
|
|
1126
|
-
line: Schema.optional<Schema.Union<[Schema.Array$<Schema.Array$<typeof Schema.Number>>, typeof Schema.Null]>>;
|
|
1127
1335
|
position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
|
|
1128
1336
|
size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
|
|
1129
1337
|
color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1130
1338
|
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1131
1339
|
}>;
|
|
1132
|
-
export type
|
|
1340
|
+
export type MarkdownComment = typeof MarkdownCommentSchema.Type;
|
|
1133
1341
|
/**
|
|
1134
1342
|
* A person who created or contributed to the workflow.
|
|
1135
1343
|
Corresponds to a `schema.org Person <https://schema.org/Person>`_.
|
|
@@ -1158,6 +1366,26 @@ export declare const CreatorPersonSchema: Schema.Struct<{
|
|
|
1158
1366
|
faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1159
1367
|
}>;
|
|
1160
1368
|
export type CreatorPerson = typeof CreatorPersonSchema.Type;
|
|
1369
|
+
/**
|
|
1370
|
+
* A plain text annotation in the workflow editor.
|
|
1371
|
+
*/
|
|
1372
|
+
export declare const TextCommentSchema: Schema.Struct<{
|
|
1373
|
+
/** Comment type (``text``). */
|
|
1374
|
+
type: Schema.Literal<["text"]>;
|
|
1375
|
+
/** The text content. */
|
|
1376
|
+
text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1377
|
+
/** Whether the text is displayed in bold. */
|
|
1378
|
+
bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1379
|
+
/** Whether the text is displayed in italic. */
|
|
1380
|
+
italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1381
|
+
/** Font size of the text. */
|
|
1382
|
+
text_size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
|
|
1383
|
+
position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
|
|
1384
|
+
size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
|
|
1385
|
+
color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1386
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1387
|
+
}>;
|
|
1388
|
+
export type TextComment = typeof TextCommentSchema.Type;
|
|
1161
1389
|
/**
|
|
1162
1390
|
* Definition of an invocation report for this workflow. Currently the only
|
|
1163
1391
|
field is 'markdown'.
|
|
@@ -1186,19 +1414,21 @@ export declare const FrameCommentSchema: Schema.Struct<{
|
|
|
1186
1414
|
}>;
|
|
1187
1415
|
export type FrameComment = typeof FrameCommentSchema.Type;
|
|
1188
1416
|
/**
|
|
1189
|
-
* A
|
|
1417
|
+
* A freehand drawn line on the editor canvas.
|
|
1190
1418
|
*/
|
|
1191
|
-
export declare const
|
|
1192
|
-
/** Comment type (``
|
|
1193
|
-
type: Schema.Literal<["
|
|
1194
|
-
/**
|
|
1195
|
-
|
|
1419
|
+
export declare const FreehandCommentSchema: Schema.Struct<{
|
|
1420
|
+
/** Comment type (``freehand``). */
|
|
1421
|
+
type: Schema.Literal<["freehand"]>;
|
|
1422
|
+
/** Line thickness. */
|
|
1423
|
+
thickness: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
|
|
1424
|
+
/** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
|
|
1425
|
+
line: Schema.optional<Schema.Union<[Schema.Array$<Schema.Array$<typeof Schema.Number>>, typeof Schema.Null]>>;
|
|
1196
1426
|
position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
|
|
1197
1427
|
size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
|
|
1198
1428
|
color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1199
1429
|
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1200
1430
|
}>;
|
|
1201
|
-
export type
|
|
1431
|
+
export type FreehandComment = typeof FreehandCommentSchema.Type;
|
|
1202
1432
|
/**
|
|
1203
1433
|
* A Galaxy workflow description. This record corresponds to the description of a workflow that should be executable
|
|
1204
1434
|
on a Galaxy server that includes the contained tool definitions.
|
|
@@ -1512,6 +1742,17 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
|
|
|
1512
1742
|
}>]>>]>>;
|
|
1513
1743
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
1514
1744
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1745
|
+
/** Validators applied to values supplied for this input. */
|
|
1746
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
1747
|
+
/** Validator type. Only `regex` is supported. */
|
|
1748
|
+
type: Schema.Literal<["regex"]>;
|
|
1749
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
1750
|
+
expression: typeof Schema.String;
|
|
1751
|
+
/** Message shown when a value fails validation. */
|
|
1752
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1753
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
1754
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1755
|
+
}>>]>>;
|
|
1515
1756
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
1516
1757
|
}>, Schema.Struct<{
|
|
1517
1758
|
/** The unique identifier for this object. */
|
|
@@ -1531,6 +1772,53 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
|
|
|
1531
1772
|
/** Must be ``boolean``. */
|
|
1532
1773
|
type: Schema.Literal<["boolean"]>;
|
|
1533
1774
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
1775
|
+
}>, Schema.Struct<{
|
|
1776
|
+
/** The unique identifier for this object. */
|
|
1777
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1778
|
+
/** A short, human-readable label of this object. */
|
|
1779
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1780
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
1781
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
1782
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
1783
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
1784
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
1785
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
1786
|
+
top: typeof Schema.Number;
|
|
1787
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
1788
|
+
left: typeof Schema.Number;
|
|
1789
|
+
}>]>>;
|
|
1790
|
+
/** Must be ``color``. */
|
|
1791
|
+
type: Schema.Literal<["color"]>;
|
|
1792
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
1793
|
+
}>, Schema.Struct<{
|
|
1794
|
+
/** The unique identifier for this object. */
|
|
1795
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1796
|
+
/** A short, human-readable label of this object. */
|
|
1797
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1798
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
1799
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
1800
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
1801
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
1802
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
1803
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
1804
|
+
top: typeof Schema.Number;
|
|
1805
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
1806
|
+
left: typeof Schema.Number;
|
|
1807
|
+
}>]>>;
|
|
1808
|
+
/** Must be ``directory_uri``. */
|
|
1809
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
1810
|
+
/** Validators applied to values supplied for this input. */
|
|
1811
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
1812
|
+
/** Validator type. Only `regex` is supported. */
|
|
1813
|
+
type: Schema.Literal<["regex"]>;
|
|
1814
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
1815
|
+
expression: typeof Schema.String;
|
|
1816
|
+
/** Message shown when a value fails validation. */
|
|
1817
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1818
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
1819
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1820
|
+
}>>]>>;
|
|
1821
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
1534
1822
|
}>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
1535
1823
|
/** The unique identifier for this object. */
|
|
1536
1824
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -1674,6 +1962,17 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
|
|
|
1674
1962
|
}>]>>]>>;
|
|
1675
1963
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
1676
1964
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1965
|
+
/** Validators applied to values supplied for this input. */
|
|
1966
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
1967
|
+
/** Validator type. Only `regex` is supported. */
|
|
1968
|
+
type: Schema.Literal<["regex"]>;
|
|
1969
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
1970
|
+
expression: typeof Schema.String;
|
|
1971
|
+
/** Message shown when a value fails validation. */
|
|
1972
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1973
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
1974
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
1975
|
+
}>>]>>;
|
|
1677
1976
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
1678
1977
|
}>, Schema.Struct<{
|
|
1679
1978
|
/** The unique identifier for this object. */
|
|
@@ -1693,6 +1992,53 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
|
|
|
1693
1992
|
/** Must be ``boolean``. */
|
|
1694
1993
|
type: Schema.Literal<["boolean"]>;
|
|
1695
1994
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
1995
|
+
}>, Schema.Struct<{
|
|
1996
|
+
/** The unique identifier for this object. */
|
|
1997
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1998
|
+
/** A short, human-readable label of this object. */
|
|
1999
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2000
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
2001
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
2002
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
2003
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
2004
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
2005
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
2006
|
+
top: typeof Schema.Number;
|
|
2007
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
2008
|
+
left: typeof Schema.Number;
|
|
2009
|
+
}>]>>;
|
|
2010
|
+
/** Must be ``color``. */
|
|
2011
|
+
type: Schema.Literal<["color"]>;
|
|
2012
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2013
|
+
}>, Schema.Struct<{
|
|
2014
|
+
/** The unique identifier for this object. */
|
|
2015
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2016
|
+
/** A short, human-readable label of this object. */
|
|
2017
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2018
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
2019
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
2020
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
2021
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
2022
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
2023
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
2024
|
+
top: typeof Schema.Number;
|
|
2025
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
2026
|
+
left: typeof Schema.Number;
|
|
2027
|
+
}>]>>;
|
|
2028
|
+
/** Must be ``directory_uri``. */
|
|
2029
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
2030
|
+
/** Validators applied to values supplied for this input. */
|
|
2031
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
2032
|
+
/** Validator type. Only `regex` is supported. */
|
|
2033
|
+
type: Schema.Literal<["regex"]>;
|
|
2034
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
2035
|
+
expression: typeof Schema.String;
|
|
2036
|
+
/** Message shown when a value fails validation. */
|
|
2037
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2038
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
2039
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
2040
|
+
}>>]>>;
|
|
2041
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
1696
2042
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
1697
2043
|
outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
|
|
1698
2044
|
/** The unique identifier for this object. */
|
|
@@ -1704,7 +2050,7 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
|
|
|
1704
2050
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
1705
2051
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1706
2052
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
1707
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
2053
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
1708
2054
|
}>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
1709
2055
|
/** The unique identifier for this object. */
|
|
1710
2056
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -1715,26 +2061,10 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
|
|
|
1715
2061
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
1716
2062
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1717
2063
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
1718
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
2064
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
1719
2065
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
1720
2066
|
}>;
|
|
1721
2067
|
export type GalaxyWorkflow = typeof GalaxyWorkflowSchema.Type;
|
|
1722
|
-
export declare const SinkSchema: Schema.Struct<{
|
|
1723
|
-
/** Specifies one or more workflow parameters that will provide input to the underlying step parameter. */
|
|
1724
|
-
source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
1725
|
-
}>;
|
|
1726
|
-
export type Sink = typeof SinkSchema.Type;
|
|
1727
|
-
/**
|
|
1728
|
-
* TODO:
|
|
1729
|
-
*/
|
|
1730
|
-
export declare const WorkflowStepInputSchema: Schema.Struct<{
|
|
1731
|
-
/** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`. The default must be applied prior to scattering or evaluating `va... */
|
|
1732
|
-
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
1733
|
-
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1734
|
-
source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
1735
|
-
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
1736
|
-
}>;
|
|
1737
|
-
export type WorkflowStepInput = typeof WorkflowStepInputSchema.Type;
|
|
1738
2068
|
/**
|
|
1739
2069
|
* This represents a non-input step a Galaxy Workflow.
|
|
1740
2070
|
|
|
@@ -2095,6 +2425,17 @@ export declare const WorkflowStepSchema: Schema.Struct<{
|
|
|
2095
2425
|
}>]>>]>>;
|
|
2096
2426
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
2097
2427
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
2428
|
+
/** Validators applied to values supplied for this input. */
|
|
2429
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
2430
|
+
/** Validator type. Only `regex` is supported. */
|
|
2431
|
+
type: Schema.Literal<["regex"]>;
|
|
2432
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
2433
|
+
expression: typeof Schema.String;
|
|
2434
|
+
/** Message shown when a value fails validation. */
|
|
2435
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2436
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
2437
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
2438
|
+
}>>]>>;
|
|
2098
2439
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2099
2440
|
}>, Schema.Struct<{
|
|
2100
2441
|
/** The unique identifier for this object. */
|
|
@@ -2114,6 +2455,53 @@ export declare const WorkflowStepSchema: Schema.Struct<{
|
|
|
2114
2455
|
/** Must be ``boolean``. */
|
|
2115
2456
|
type: Schema.Literal<["boolean"]>;
|
|
2116
2457
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2458
|
+
}>, Schema.Struct<{
|
|
2459
|
+
/** The unique identifier for this object. */
|
|
2460
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2461
|
+
/** A short, human-readable label of this object. */
|
|
2462
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2463
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
2464
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
2465
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
2466
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
2467
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
2468
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
2469
|
+
top: typeof Schema.Number;
|
|
2470
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
2471
|
+
left: typeof Schema.Number;
|
|
2472
|
+
}>]>>;
|
|
2473
|
+
/** Must be ``color``. */
|
|
2474
|
+
type: Schema.Literal<["color"]>;
|
|
2475
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2476
|
+
}>, Schema.Struct<{
|
|
2477
|
+
/** The unique identifier for this object. */
|
|
2478
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2479
|
+
/** A short, human-readable label of this object. */
|
|
2480
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2481
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
2482
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
2483
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
2484
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
2485
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
2486
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
2487
|
+
top: typeof Schema.Number;
|
|
2488
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
2489
|
+
left: typeof Schema.Number;
|
|
2490
|
+
}>]>>;
|
|
2491
|
+
/** Must be ``directory_uri``. */
|
|
2492
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
2493
|
+
/** Validators applied to values supplied for this input. */
|
|
2494
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
2495
|
+
/** Validator type. Only `regex` is supported. */
|
|
2496
|
+
type: Schema.Literal<["regex"]>;
|
|
2497
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
2498
|
+
expression: typeof Schema.String;
|
|
2499
|
+
/** Message shown when a value fails validation. */
|
|
2500
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2501
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
2502
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
2503
|
+
}>>]>>;
|
|
2504
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2117
2505
|
}>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
2118
2506
|
/** The unique identifier for this object. */
|
|
2119
2507
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -2257,6 +2645,17 @@ export declare const WorkflowStepSchema: Schema.Struct<{
|
|
|
2257
2645
|
}>]>>]>>;
|
|
2258
2646
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
2259
2647
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
2648
|
+
/** Validators applied to values supplied for this input. */
|
|
2649
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
2650
|
+
/** Validator type. Only `regex` is supported. */
|
|
2651
|
+
type: Schema.Literal<["regex"]>;
|
|
2652
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
2653
|
+
expression: typeof Schema.String;
|
|
2654
|
+
/** Message shown when a value fails validation. */
|
|
2655
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2656
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
2657
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
2658
|
+
}>>]>>;
|
|
2260
2659
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2261
2660
|
}>, Schema.Struct<{
|
|
2262
2661
|
/** The unique identifier for this object. */
|
|
@@ -2276,6 +2675,53 @@ export declare const WorkflowStepSchema: Schema.Struct<{
|
|
|
2276
2675
|
/** Must be ``boolean``. */
|
|
2277
2676
|
type: Schema.Literal<["boolean"]>;
|
|
2278
2677
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2678
|
+
}>, Schema.Struct<{
|
|
2679
|
+
/** The unique identifier for this object. */
|
|
2680
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2681
|
+
/** A short, human-readable label of this object. */
|
|
2682
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2683
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
2684
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
2685
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
2686
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
2687
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
2688
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
2689
|
+
top: typeof Schema.Number;
|
|
2690
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
2691
|
+
left: typeof Schema.Number;
|
|
2692
|
+
}>]>>;
|
|
2693
|
+
/** Must be ``color``. */
|
|
2694
|
+
type: Schema.Literal<["color"]>;
|
|
2695
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2696
|
+
}>, Schema.Struct<{
|
|
2697
|
+
/** The unique identifier for this object. */
|
|
2698
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2699
|
+
/** A short, human-readable label of this object. */
|
|
2700
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2701
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
2702
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
2703
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
2704
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
2705
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
2706
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
2707
|
+
top: typeof Schema.Number;
|
|
2708
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
2709
|
+
left: typeof Schema.Number;
|
|
2710
|
+
}>]>>;
|
|
2711
|
+
/** Must be ``directory_uri``. */
|
|
2712
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
2713
|
+
/** Validators applied to values supplied for this input. */
|
|
2714
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
2715
|
+
/** Validator type. Only `regex` is supported. */
|
|
2716
|
+
type: Schema.Literal<["regex"]>;
|
|
2717
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
2718
|
+
expression: typeof Schema.String;
|
|
2719
|
+
/** Message shown when a value fails validation. */
|
|
2720
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2721
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
2722
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
2723
|
+
}>>]>>;
|
|
2724
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2279
2725
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
2280
2726
|
outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
|
|
2281
2727
|
/** The unique identifier for this object. */
|
|
@@ -2287,7 +2733,7 @@ export declare const WorkflowStepSchema: Schema.Struct<{
|
|
|
2287
2733
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
2288
2734
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2289
2735
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
2290
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
2736
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
2291
2737
|
}>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
2292
2738
|
/** The unique identifier for this object. */
|
|
2293
2739
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -2298,7 +2744,7 @@ export declare const WorkflowStepSchema: Schema.Struct<{
|
|
|
2298
2744
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
2299
2745
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2300
2746
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
2301
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
2747
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
2302
2748
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
2303
2749
|
}>, typeof Schema.String, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
|
|
2304
2750
|
runtime_inputs: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
|
|
@@ -2710,6 +3156,53 @@ export declare const DraftWorkflowStepSchema: Schema.Struct<{
|
|
|
2710
3156
|
}>]>>]>>;
|
|
2711
3157
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
2712
3158
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
3159
|
+
/** Validators applied to values supplied for this input. */
|
|
3160
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
3161
|
+
/** Validator type. Only `regex` is supported. */
|
|
3162
|
+
type: Schema.Literal<["regex"]>;
|
|
3163
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
3164
|
+
expression: typeof Schema.String;
|
|
3165
|
+
/** Message shown when a value fails validation. */
|
|
3166
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3167
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
3168
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
3169
|
+
}>>]>>;
|
|
3170
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3171
|
+
}>, Schema.Struct<{
|
|
3172
|
+
/** The unique identifier for this object. */
|
|
3173
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3174
|
+
/** A short, human-readable label of this object. */
|
|
3175
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3176
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
3177
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
3178
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
3179
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
3180
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
3181
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
3182
|
+
top: typeof Schema.Number;
|
|
3183
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
3184
|
+
left: typeof Schema.Number;
|
|
3185
|
+
}>]>>;
|
|
3186
|
+
/** Must be ``boolean``. */
|
|
3187
|
+
type: Schema.Literal<["boolean"]>;
|
|
3188
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3189
|
+
}>, Schema.Struct<{
|
|
3190
|
+
/** The unique identifier for this object. */
|
|
3191
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3192
|
+
/** A short, human-readable label of this object. */
|
|
3193
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3194
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
3195
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
3196
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
3197
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
3198
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
3199
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
3200
|
+
top: typeof Schema.Number;
|
|
3201
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
3202
|
+
left: typeof Schema.Number;
|
|
3203
|
+
}>]>>;
|
|
3204
|
+
/** Must be ``color``. */
|
|
3205
|
+
type: Schema.Literal<["color"]>;
|
|
2713
3206
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2714
3207
|
}>, Schema.Struct<{
|
|
2715
3208
|
/** The unique identifier for this object. */
|
|
@@ -2726,8 +3219,19 @@ export declare const DraftWorkflowStepSchema: Schema.Struct<{
|
|
|
2726
3219
|
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
2727
3220
|
left: typeof Schema.Number;
|
|
2728
3221
|
}>]>>;
|
|
2729
|
-
/** Must be ``
|
|
2730
|
-
type: Schema.Literal<["
|
|
3222
|
+
/** Must be ``directory_uri``. */
|
|
3223
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
3224
|
+
/** Validators applied to values supplied for this input. */
|
|
3225
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
3226
|
+
/** Validator type. Only `regex` is supported. */
|
|
3227
|
+
type: Schema.Literal<["regex"]>;
|
|
3228
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
3229
|
+
expression: typeof Schema.String;
|
|
3230
|
+
/** Message shown when a value fails validation. */
|
|
3231
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3232
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
3233
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
3234
|
+
}>>]>>;
|
|
2731
3235
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2732
3236
|
}>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
2733
3237
|
/** The unique identifier for this object. */
|
|
@@ -2872,6 +3376,17 @@ export declare const DraftWorkflowStepSchema: Schema.Struct<{
|
|
|
2872
3376
|
}>]>>]>>;
|
|
2873
3377
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
2874
3378
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
3379
|
+
/** Validators applied to values supplied for this input. */
|
|
3380
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
3381
|
+
/** Validator type. Only `regex` is supported. */
|
|
3382
|
+
type: Schema.Literal<["regex"]>;
|
|
3383
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
3384
|
+
expression: typeof Schema.String;
|
|
3385
|
+
/** Message shown when a value fails validation. */
|
|
3386
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3387
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
3388
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
3389
|
+
}>>]>>;
|
|
2875
3390
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2876
3391
|
}>, Schema.Struct<{
|
|
2877
3392
|
/** The unique identifier for this object. */
|
|
@@ -2891,6 +3406,53 @@ export declare const DraftWorkflowStepSchema: Schema.Struct<{
|
|
|
2891
3406
|
/** Must be ``boolean``. */
|
|
2892
3407
|
type: Schema.Literal<["boolean"]>;
|
|
2893
3408
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3409
|
+
}>, Schema.Struct<{
|
|
3410
|
+
/** The unique identifier for this object. */
|
|
3411
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3412
|
+
/** A short, human-readable label of this object. */
|
|
3413
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3414
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
3415
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
3416
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
3417
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
3418
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
3419
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
3420
|
+
top: typeof Schema.Number;
|
|
3421
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
3422
|
+
left: typeof Schema.Number;
|
|
3423
|
+
}>]>>;
|
|
3424
|
+
/** Must be ``color``. */
|
|
3425
|
+
type: Schema.Literal<["color"]>;
|
|
3426
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3427
|
+
}>, Schema.Struct<{
|
|
3428
|
+
/** The unique identifier for this object. */
|
|
3429
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3430
|
+
/** A short, human-readable label of this object. */
|
|
3431
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3432
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
3433
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
3434
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
3435
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
3436
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
3437
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
3438
|
+
top: typeof Schema.Number;
|
|
3439
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
3440
|
+
left: typeof Schema.Number;
|
|
3441
|
+
}>]>>;
|
|
3442
|
+
/** Must be ``directory_uri``. */
|
|
3443
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
3444
|
+
/** Validators applied to values supplied for this input. */
|
|
3445
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
3446
|
+
/** Validator type. Only `regex` is supported. */
|
|
3447
|
+
type: Schema.Literal<["regex"]>;
|
|
3448
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
3449
|
+
expression: typeof Schema.String;
|
|
3450
|
+
/** Message shown when a value fails validation. */
|
|
3451
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3452
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
3453
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
3454
|
+
}>>]>>;
|
|
3455
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
2894
3456
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
2895
3457
|
outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
|
|
2896
3458
|
/** The unique identifier for this object. */
|
|
@@ -2902,7 +3464,7 @@ export declare const DraftWorkflowStepSchema: Schema.Struct<{
|
|
|
2902
3464
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
2903
3465
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2904
3466
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
2905
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
3467
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
2906
3468
|
}>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
2907
3469
|
/** The unique identifier for this object. */
|
|
2908
3470
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -2913,7 +3475,7 @@ export declare const DraftWorkflowStepSchema: Schema.Struct<{
|
|
|
2913
3475
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
2914
3476
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
2915
3477
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
2916
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
3478
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
2917
3479
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
2918
3480
|
}>, typeof Schema.String, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
|
|
2919
3481
|
runtime_inputs: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
|
|
@@ -3310,6 +3872,17 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
3310
3872
|
}>]>>]>>;
|
|
3311
3873
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
3312
3874
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
3875
|
+
/** Validators applied to values supplied for this input. */
|
|
3876
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
3877
|
+
/** Validator type. Only `regex` is supported. */
|
|
3878
|
+
type: Schema.Literal<["regex"]>;
|
|
3879
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
3880
|
+
expression: typeof Schema.String;
|
|
3881
|
+
/** Message shown when a value fails validation. */
|
|
3882
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3883
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
3884
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
3885
|
+
}>>]>>;
|
|
3313
3886
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3314
3887
|
}>, Schema.Struct<{
|
|
3315
3888
|
/** The unique identifier for this object. */
|
|
@@ -3329,6 +3902,53 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
3329
3902
|
/** Must be ``boolean``. */
|
|
3330
3903
|
type: Schema.Literal<["boolean"]>;
|
|
3331
3904
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3905
|
+
}>, Schema.Struct<{
|
|
3906
|
+
/** The unique identifier for this object. */
|
|
3907
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3908
|
+
/** A short, human-readable label of this object. */
|
|
3909
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3910
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
3911
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
3912
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
3913
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
3914
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
3915
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
3916
|
+
top: typeof Schema.Number;
|
|
3917
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
3918
|
+
left: typeof Schema.Number;
|
|
3919
|
+
}>]>>;
|
|
3920
|
+
/** Must be ``color``. */
|
|
3921
|
+
type: Schema.Literal<["color"]>;
|
|
3922
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3923
|
+
}>, Schema.Struct<{
|
|
3924
|
+
/** The unique identifier for this object. */
|
|
3925
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3926
|
+
/** A short, human-readable label of this object. */
|
|
3927
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3928
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
3929
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
3930
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
3931
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
3932
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
3933
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
3934
|
+
top: typeof Schema.Number;
|
|
3935
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
3936
|
+
left: typeof Schema.Number;
|
|
3937
|
+
}>]>>;
|
|
3938
|
+
/** Must be ``directory_uri``. */
|
|
3939
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
3940
|
+
/** Validators applied to values supplied for this input. */
|
|
3941
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
3942
|
+
/** Validator type. Only `regex` is supported. */
|
|
3943
|
+
type: Schema.Literal<["regex"]>;
|
|
3944
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
3945
|
+
expression: typeof Schema.String;
|
|
3946
|
+
/** Message shown when a value fails validation. */
|
|
3947
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3948
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
3949
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
3950
|
+
}>>]>>;
|
|
3951
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3332
3952
|
}>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
3333
3953
|
/** The unique identifier for this object. */
|
|
3334
3954
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -3472,6 +4092,17 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
3472
4092
|
}>]>>]>>;
|
|
3473
4093
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
3474
4094
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
4095
|
+
/** Validators applied to values supplied for this input. */
|
|
4096
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
4097
|
+
/** Validator type. Only `regex` is supported. */
|
|
4098
|
+
type: Schema.Literal<["regex"]>;
|
|
4099
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
4100
|
+
expression: typeof Schema.String;
|
|
4101
|
+
/** Message shown when a value fails validation. */
|
|
4102
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4103
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
4104
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
4105
|
+
}>>]>>;
|
|
3475
4106
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3476
4107
|
}>, Schema.Struct<{
|
|
3477
4108
|
/** The unique identifier for this object. */
|
|
@@ -3491,6 +4122,53 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
3491
4122
|
/** Must be ``boolean``. */
|
|
3492
4123
|
type: Schema.Literal<["boolean"]>;
|
|
3493
4124
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4125
|
+
}>, Schema.Struct<{
|
|
4126
|
+
/** The unique identifier for this object. */
|
|
4127
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4128
|
+
/** A short, human-readable label of this object. */
|
|
4129
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4130
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
4131
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
4132
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
4133
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
4134
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
4135
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
4136
|
+
top: typeof Schema.Number;
|
|
4137
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
4138
|
+
left: typeof Schema.Number;
|
|
4139
|
+
}>]>>;
|
|
4140
|
+
/** Must be ``color``. */
|
|
4141
|
+
type: Schema.Literal<["color"]>;
|
|
4142
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4143
|
+
}>, Schema.Struct<{
|
|
4144
|
+
/** The unique identifier for this object. */
|
|
4145
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4146
|
+
/** A short, human-readable label of this object. */
|
|
4147
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4148
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
4149
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
4150
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
4151
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
4152
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
4153
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
4154
|
+
top: typeof Schema.Number;
|
|
4155
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
4156
|
+
left: typeof Schema.Number;
|
|
4157
|
+
}>]>>;
|
|
4158
|
+
/** Must be ``directory_uri``. */
|
|
4159
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
4160
|
+
/** Validators applied to values supplied for this input. */
|
|
4161
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
4162
|
+
/** Validator type. Only `regex` is supported. */
|
|
4163
|
+
type: Schema.Literal<["regex"]>;
|
|
4164
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
4165
|
+
expression: typeof Schema.String;
|
|
4166
|
+
/** Message shown when a value fails validation. */
|
|
4167
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4168
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
4169
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
4170
|
+
}>>]>>;
|
|
4171
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3494
4172
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
3495
4173
|
outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
|
|
3496
4174
|
/** The unique identifier for this object. */
|
|
@@ -3502,7 +4180,7 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
3502
4180
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
3503
4181
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3504
4182
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
3505
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
4183
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
3506
4184
|
}>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
3507
4185
|
/** The unique identifier for this object. */
|
|
3508
4186
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -3513,7 +4191,7 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
3513
4191
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
3514
4192
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
3515
4193
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
3516
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
4194
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
3517
4195
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
3518
4196
|
}>, typeof Schema.String, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
|
|
3519
4197
|
runtime_inputs: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
|
|
@@ -3893,6 +4571,17 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
3893
4571
|
}>]>>]>>;
|
|
3894
4572
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
3895
4573
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
4574
|
+
/** Validators applied to values supplied for this input. */
|
|
4575
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
4576
|
+
/** Validator type. Only `regex` is supported. */
|
|
4577
|
+
type: Schema.Literal<["regex"]>;
|
|
4578
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
4579
|
+
expression: typeof Schema.String;
|
|
4580
|
+
/** Message shown when a value fails validation. */
|
|
4581
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4582
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
4583
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
4584
|
+
}>>]>>;
|
|
3896
4585
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3897
4586
|
}>, Schema.Struct<{
|
|
3898
4587
|
/** The unique identifier for this object. */
|
|
@@ -3912,6 +4601,53 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
3912
4601
|
/** Must be ``boolean``. */
|
|
3913
4602
|
type: Schema.Literal<["boolean"]>;
|
|
3914
4603
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4604
|
+
}>, Schema.Struct<{
|
|
4605
|
+
/** The unique identifier for this object. */
|
|
4606
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4607
|
+
/** A short, human-readable label of this object. */
|
|
4608
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4609
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
4610
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
4611
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
4612
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
4613
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
4614
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
4615
|
+
top: typeof Schema.Number;
|
|
4616
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
4617
|
+
left: typeof Schema.Number;
|
|
4618
|
+
}>]>>;
|
|
4619
|
+
/** Must be ``color``. */
|
|
4620
|
+
type: Schema.Literal<["color"]>;
|
|
4621
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4622
|
+
}>, Schema.Struct<{
|
|
4623
|
+
/** The unique identifier for this object. */
|
|
4624
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4625
|
+
/** A short, human-readable label of this object. */
|
|
4626
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4627
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
4628
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
4629
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
4630
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
4631
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
4632
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
4633
|
+
top: typeof Schema.Number;
|
|
4634
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
4635
|
+
left: typeof Schema.Number;
|
|
4636
|
+
}>]>>;
|
|
4637
|
+
/** Must be ``directory_uri``. */
|
|
4638
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
4639
|
+
/** Validators applied to values supplied for this input. */
|
|
4640
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
4641
|
+
/** Validator type. Only `regex` is supported. */
|
|
4642
|
+
type: Schema.Literal<["regex"]>;
|
|
4643
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
4644
|
+
expression: typeof Schema.String;
|
|
4645
|
+
/** Message shown when a value fails validation. */
|
|
4646
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4647
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
4648
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
4649
|
+
}>>]>>;
|
|
4650
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
3915
4651
|
}>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
3916
4652
|
/** The unique identifier for this object. */
|
|
3917
4653
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -4055,6 +4791,17 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4055
4791
|
}>]>>]>>;
|
|
4056
4792
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
4057
4793
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
4794
|
+
/** Validators applied to values supplied for this input. */
|
|
4795
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
4796
|
+
/** Validator type. Only `regex` is supported. */
|
|
4797
|
+
type: Schema.Literal<["regex"]>;
|
|
4798
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
4799
|
+
expression: typeof Schema.String;
|
|
4800
|
+
/** Message shown when a value fails validation. */
|
|
4801
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4802
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
4803
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
4804
|
+
}>>]>>;
|
|
4058
4805
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4059
4806
|
}>, Schema.Struct<{
|
|
4060
4807
|
/** The unique identifier for this object. */
|
|
@@ -4074,6 +4821,53 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4074
4821
|
/** Must be ``boolean``. */
|
|
4075
4822
|
type: Schema.Literal<["boolean"]>;
|
|
4076
4823
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4824
|
+
}>, Schema.Struct<{
|
|
4825
|
+
/** The unique identifier for this object. */
|
|
4826
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4827
|
+
/** A short, human-readable label of this object. */
|
|
4828
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4829
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
4830
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
4831
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
4832
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
4833
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
4834
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
4835
|
+
top: typeof Schema.Number;
|
|
4836
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
4837
|
+
left: typeof Schema.Number;
|
|
4838
|
+
}>]>>;
|
|
4839
|
+
/** Must be ``color``. */
|
|
4840
|
+
type: Schema.Literal<["color"]>;
|
|
4841
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4842
|
+
}>, Schema.Struct<{
|
|
4843
|
+
/** The unique identifier for this object. */
|
|
4844
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4845
|
+
/** A short, human-readable label of this object. */
|
|
4846
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4847
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
4848
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
4849
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
4850
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
4851
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
4852
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
4853
|
+
top: typeof Schema.Number;
|
|
4854
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
4855
|
+
left: typeof Schema.Number;
|
|
4856
|
+
}>]>>;
|
|
4857
|
+
/** Must be ``directory_uri``. */
|
|
4858
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
4859
|
+
/** Validators applied to values supplied for this input. */
|
|
4860
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
4861
|
+
/** Validator type. Only `regex` is supported. */
|
|
4862
|
+
type: Schema.Literal<["regex"]>;
|
|
4863
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
4864
|
+
expression: typeof Schema.String;
|
|
4865
|
+
/** Message shown when a value fails validation. */
|
|
4866
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4867
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
4868
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
4869
|
+
}>>]>>;
|
|
4870
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4077
4871
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
4078
4872
|
outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
|
|
4079
4873
|
/** The unique identifier for this object. */
|
|
@@ -4085,7 +4879,7 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4085
4879
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
4086
4880
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4087
4881
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
4088
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
4882
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
4089
4883
|
}>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
4090
4884
|
/** The unique identifier for this object. */
|
|
4091
4885
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -4096,7 +4890,7 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4096
4890
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
4097
4891
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4098
4892
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
4099
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
4893
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
4100
4894
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
4101
4895
|
}>, typeof Schema.String, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
|
|
4102
4896
|
runtime_inputs: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
|
|
@@ -4391,6 +5185,17 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4391
5185
|
}>]>>]>>;
|
|
4392
5186
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
4393
5187
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
5188
|
+
/** Validators applied to values supplied for this input. */
|
|
5189
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
5190
|
+
/** Validator type. Only `regex` is supported. */
|
|
5191
|
+
type: Schema.Literal<["regex"]>;
|
|
5192
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
5193
|
+
expression: typeof Schema.String;
|
|
5194
|
+
/** Message shown when a value fails validation. */
|
|
5195
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5196
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
5197
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
5198
|
+
}>>]>>;
|
|
4394
5199
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4395
5200
|
}>, Schema.Struct<{
|
|
4396
5201
|
/** The unique identifier for this object. */
|
|
@@ -4410,6 +5215,53 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4410
5215
|
/** Must be ``boolean``. */
|
|
4411
5216
|
type: Schema.Literal<["boolean"]>;
|
|
4412
5217
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
5218
|
+
}>, Schema.Struct<{
|
|
5219
|
+
/** The unique identifier for this object. */
|
|
5220
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5221
|
+
/** A short, human-readable label of this object. */
|
|
5222
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5223
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
5224
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
5225
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
5226
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
5227
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
5228
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
5229
|
+
top: typeof Schema.Number;
|
|
5230
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
5231
|
+
left: typeof Schema.Number;
|
|
5232
|
+
}>]>>;
|
|
5233
|
+
/** Must be ``color``. */
|
|
5234
|
+
type: Schema.Literal<["color"]>;
|
|
5235
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
5236
|
+
}>, Schema.Struct<{
|
|
5237
|
+
/** The unique identifier for this object. */
|
|
5238
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5239
|
+
/** A short, human-readable label of this object. */
|
|
5240
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5241
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
5242
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
5243
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
5244
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
5245
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
5246
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
5247
|
+
top: typeof Schema.Number;
|
|
5248
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
5249
|
+
left: typeof Schema.Number;
|
|
5250
|
+
}>]>>;
|
|
5251
|
+
/** Must be ``directory_uri``. */
|
|
5252
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
5253
|
+
/** Validators applied to values supplied for this input. */
|
|
5254
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
5255
|
+
/** Validator type. Only `regex` is supported. */
|
|
5256
|
+
type: Schema.Literal<["regex"]>;
|
|
5257
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
5258
|
+
expression: typeof Schema.String;
|
|
5259
|
+
/** Message shown when a value fails validation. */
|
|
5260
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5261
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
5262
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
5263
|
+
}>>]>>;
|
|
5264
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4413
5265
|
}>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
4414
5266
|
/** The unique identifier for this object. */
|
|
4415
5267
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -4553,6 +5405,17 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4553
5405
|
}>]>>]>>;
|
|
4554
5406
|
/** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
|
|
4555
5407
|
restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
5408
|
+
/** Validators applied to values supplied for this input. */
|
|
5409
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
5410
|
+
/** Validator type. Only `regex` is supported. */
|
|
5411
|
+
type: Schema.Literal<["regex"]>;
|
|
5412
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
5413
|
+
expression: typeof Schema.String;
|
|
5414
|
+
/** Message shown when a value fails validation. */
|
|
5415
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5416
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
5417
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
5418
|
+
}>>]>>;
|
|
4556
5419
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4557
5420
|
}>, Schema.Struct<{
|
|
4558
5421
|
/** The unique identifier for this object. */
|
|
@@ -4572,6 +5435,53 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4572
5435
|
/** Must be ``boolean``. */
|
|
4573
5436
|
type: Schema.Literal<["boolean"]>;
|
|
4574
5437
|
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
5438
|
+
}>, Schema.Struct<{
|
|
5439
|
+
/** The unique identifier for this object. */
|
|
5440
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5441
|
+
/** A short, human-readable label of this object. */
|
|
5442
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5443
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
5444
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
5445
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
5446
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
5447
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
5448
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
5449
|
+
top: typeof Schema.Number;
|
|
5450
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
5451
|
+
left: typeof Schema.Number;
|
|
5452
|
+
}>]>>;
|
|
5453
|
+
/** Must be ``color``. */
|
|
5454
|
+
type: Schema.Literal<["color"]>;
|
|
5455
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
5456
|
+
}>, Schema.Struct<{
|
|
5457
|
+
/** The unique identifier for this object. */
|
|
5458
|
+
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5459
|
+
/** A short, human-readable label of this object. */
|
|
5460
|
+
label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5461
|
+
/** A documentation string for this object, or an array of strings which should be concatenated. */
|
|
5462
|
+
doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
|
|
5463
|
+
/** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
|
|
5464
|
+
default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
|
|
5465
|
+
position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
|
|
5466
|
+
/** Relative vertical position of the step's node when rendered in the workflow editor. */
|
|
5467
|
+
top: typeof Schema.Number;
|
|
5468
|
+
/** Relative horizontal position of the step's node when rendered in the workflow editor. */
|
|
5469
|
+
left: typeof Schema.Number;
|
|
5470
|
+
}>]>>;
|
|
5471
|
+
/** Must be ``directory_uri``. */
|
|
5472
|
+
type: Schema.Literal<["directory_uri"]>;
|
|
5473
|
+
/** Validators applied to values supplied for this input. */
|
|
5474
|
+
validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
|
|
5475
|
+
/** Validator type. Only `regex` is supported. */
|
|
5476
|
+
type: Schema.Literal<["regex"]>;
|
|
5477
|
+
/** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
|
|
5478
|
+
expression: typeof Schema.String;
|
|
5479
|
+
/** Message shown when a value fails validation. */
|
|
5480
|
+
message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
5481
|
+
/** Reject matching values instead of values that do not match. Defaults to `false`. */
|
|
5482
|
+
negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
|
|
5483
|
+
}>>]>>;
|
|
5484
|
+
optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
|
|
4575
5485
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
4576
5486
|
outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
|
|
4577
5487
|
/** The unique identifier for this object. */
|
|
@@ -4583,7 +5493,7 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4583
5493
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
4584
5494
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4585
5495
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
4586
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
5496
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
4587
5497
|
}>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
|
|
4588
5498
|
/** The unique identifier for this object. */
|
|
4589
5499
|
id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
@@ -4594,14 +5504,16 @@ export declare const GalaxyWorkflowDraftSchema: Schema.Struct<{
|
|
|
4594
5504
|
/** Specifies workflow parameter that supply the value of to the output parameter. */
|
|
4595
5505
|
outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
|
|
4596
5506
|
/** Specify valid types of data that may be assigned to this parameter. */
|
|
4597
|
-
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
|
|
5507
|
+
type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
|
|
4598
5508
|
}>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
|
|
4599
5509
|
}>;
|
|
4600
5510
|
export type GalaxyWorkflowDraft = typeof GalaxyWorkflowDraftSchema.Type;
|
|
4601
|
-
export declare function isWorkflowDataParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowDataParameter;
|
|
4602
|
-
export declare function isWorkflowCollectionParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowCollectionParameter;
|
|
4603
|
-
export declare function isWorkflowIntegerParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowIntegerParameter;
|
|
4604
|
-
export declare function isWorkflowTextParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowTextParameter;
|
|
4605
|
-
export declare function isWorkflowFloatParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowFloatParameter;
|
|
4606
|
-
export declare function isWorkflowBooleanParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowBooleanParameter;
|
|
5511
|
+
export declare function isWorkflowDataParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowDataParameter;
|
|
5512
|
+
export declare function isWorkflowCollectionParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowCollectionParameter;
|
|
5513
|
+
export declare function isWorkflowIntegerParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowIntegerParameter;
|
|
5514
|
+
export declare function isWorkflowTextParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowTextParameter;
|
|
5515
|
+
export declare function isWorkflowFloatParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowFloatParameter;
|
|
5516
|
+
export declare function isWorkflowBooleanParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowBooleanParameter;
|
|
5517
|
+
export declare function isWorkflowColorParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowColorParameter;
|
|
5518
|
+
export declare function isWorkflowDirectoryUriParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowDirectoryUriParameter;
|
|
4607
5519
|
//# sourceMappingURL=gxformat2-draft.effect.d.ts.map
|