@galaxy-tool-util/schema 1.14.0 → 1.15.0

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Files changed (67) hide show
  1. package/dist/index.d.ts +1 -1
  2. package/dist/index.d.ts.map +1 -1
  3. package/dist/index.js +1 -1
  4. package/dist/index.js.map +1 -1
  5. package/dist/user-tool-source/schema.generated.d.ts +1203 -266
  6. package/dist/user-tool-source/schema.generated.d.ts.map +1 -1
  7. package/dist/user-tool-source/schema.generated.js +1522 -367
  8. package/dist/user-tool-source/schema.generated.js.map +1 -1
  9. package/dist/workflow/index.d.ts +1 -1
  10. package/dist/workflow/index.d.ts.map +1 -1
  11. package/dist/workflow/index.js +1 -1
  12. package/dist/workflow/index.js.map +1 -1
  13. package/dist/workflow/input-parameter.d.ts +280 -0
  14. package/dist/workflow/input-parameter.d.ts.map +1 -0
  15. package/dist/workflow/input-parameter.js +38 -0
  16. package/dist/workflow/input-parameter.js.map +1 -0
  17. package/dist/workflow/lint.d.ts.map +1 -1
  18. package/dist/workflow/lint.js +156 -50
  19. package/dist/workflow/lint.js.map +1 -1
  20. package/dist/workflow/mermaid.d.ts.map +1 -1
  21. package/dist/workflow/mermaid.js +1 -0
  22. package/dist/workflow/mermaid.js.map +1 -1
  23. package/dist/workflow/normalized/native.js +5 -4
  24. package/dist/workflow/normalized/native.js.map +1 -1
  25. package/dist/workflow/normalized/toFormat2.d.ts +1 -0
  26. package/dist/workflow/normalized/toFormat2.d.ts.map +1 -1
  27. package/dist/workflow/normalized/toFormat2.js +24 -2
  28. package/dist/workflow/normalized/toFormat2.js.map +1 -1
  29. package/dist/workflow/normalized/toNative.d.ts +3 -1
  30. package/dist/workflow/normalized/toNative.d.ts.map +1 -1
  31. package/dist/workflow/normalized/toNative.js +32 -11
  32. package/dist/workflow/normalized/toNative.js.map +1 -1
  33. package/dist/workflow/raw/gxformat2-draft.d.ts +67 -9
  34. package/dist/workflow/raw/gxformat2-draft.d.ts.map +1 -1
  35. package/dist/workflow/raw/gxformat2-draft.effect.d.ts +1073 -161
  36. package/dist/workflow/raw/gxformat2-draft.effect.d.ts.map +1 -1
  37. package/dist/workflow/raw/gxformat2-draft.effect.js +184 -120
  38. package/dist/workflow/raw/gxformat2-draft.effect.js.map +1 -1
  39. package/dist/workflow/raw/gxformat2-draft.js +6 -0
  40. package/dist/workflow/raw/gxformat2-draft.js.map +1 -1
  41. package/dist/workflow/raw/gxformat2.d.ts +67 -9
  42. package/dist/workflow/raw/gxformat2.d.ts.map +1 -1
  43. package/dist/workflow/raw/gxformat2.effect.d.ts +591 -143
  44. package/dist/workflow/raw/gxformat2.effect.d.ts.map +1 -1
  45. package/dist/workflow/raw/gxformat2.effect.js +169 -105
  46. package/dist/workflow/raw/gxformat2.effect.js.map +1 -1
  47. package/dist/workflow/raw/gxformat2.js +6 -0
  48. package/dist/workflow/raw/gxformat2.js.map +1 -1
  49. package/dist/workflow/raw/native.d.ts +14 -0
  50. package/dist/workflow/raw/native.d.ts.map +1 -1
  51. package/dist/workflow/raw/native.effect.d.ts +45 -30
  52. package/dist/workflow/raw/native.effect.d.ts.map +1 -1
  53. package/dist/workflow/raw/native.effect.js +40 -26
  54. package/dist/workflow/raw/native.effect.js.map +1 -1
  55. package/dist/workflow/raw/native.js.map +1 -1
  56. package/dist/workflow/schema_rules.yml +9 -0
  57. package/dist/workflow/semantic-validators.d.ts.map +1 -1
  58. package/dist/workflow/semantic-validators.js +17 -8
  59. package/dist/workflow/semantic-validators.js.map +1 -1
  60. package/dist/workflow/strict-checks.d.ts.map +1 -1
  61. package/dist/workflow/strict-checks.js +2 -3
  62. package/dist/workflow/strict-checks.js.map +1 -1
  63. package/dist/workflow/validators.d.ts +7 -4
  64. package/dist/workflow/validators.d.ts.map +1 -1
  65. package/dist/workflow/validators.js +20 -9
  66. package/dist/workflow/validators.js.map +1 -1
  67. package/package.json +1 -1
@@ -16,7 +16,7 @@ export declare const PrimitiveTypeSchema: Schema.Literal<["null", "boolean", "in
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  export type PrimitiveType = typeof PrimitiveTypeSchema.Type;
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  /**
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  * Extends primitive types with the native Galaxy concepts such as datasets and collections.
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- Normalized gxformat2 workflow input declaration spellings are ``data``, ``collection``, ``string``, ``int``, ``float``, and ``boolean``. Other spellings are accepted as compatibility aliases on import but normalized gxformat2 output emits the normalized spellings.
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+ Normalized gxformat2 workflow input declaration spellings are ``data``, ``collection``, ``string``, ``int``, ``float``, ``boolean``, ``color``, and ``directory_uri``. Other spellings are accepted as compatibility aliases on import but normalized gxformat2 output emits the normalized spellings.
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  data: one Galaxy dataset input. Native Galaxy ``data_input`` converts to this spelling.
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  File: accepted alias for ``data``, but normalized gxformat2 output emits ``data``. Note: workflow **test job** YAML uses ``type: File`` to mean 'stage this file as test input data', which is a separate concept from workflow input declaration.
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  collection: one Galaxy dataset collection input. Native Galaxy ``data_collection_input`` converts to this spelling.
@@ -24,8 +24,10 @@ string: normalized gxformat2 spelling for native Galaxy text workflow parameters
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  text: accepted alias for ``string`` because native Galaxy parameter state and Galaxy tool XML terminology use ``text``.
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  int: normalized gxformat2 spelling for native Galaxy integer workflow parameters.
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  integer: accepted alias for ``int`` because native Galaxy parameter state and Galaxy tool XML terminology use ``integer``.
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+ color: native Galaxy color workflow parameter; the value is a color string such as ``#ff0000``.
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+ directory_uri: native Galaxy directory URI workflow parameter; the value is a URI string such as ``s3://bucket/path/``.
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  */
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- export declare const GalaxyTypeSchema: Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>;
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+ export declare const GalaxyTypeSchema: Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>;
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  export type GalaxyType = typeof GalaxyTypeSchema.Type;
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  /**
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  * Module types used by Galaxy steps. Galaxy's native format allows additional types such as data_input, data_input_collection, and parameter_type
@@ -252,9 +254,11 @@ export declare const MinMaxSchema: Schema.Struct<{
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  }>;
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  export type MinMax = typeof MinMaxSchema.Type;
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  /**
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- * A float input parameter for a Galaxy workflow.
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+ * A scalar integer workflow parameter. Normalized gxformat2 output uses
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+ ``type: int``. ``type: integer`` is accepted for compatibility with native
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+ Galaxy parameter state and Galaxy tool XML terminology.
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  */
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- export declare const WorkflowFloatParameterSchema: Schema.Struct<{
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+ export declare const WorkflowIntegerParameterSchema: Schema.Struct<{
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  /** The unique identifier for this object. */
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  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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  /** A short, human-readable label of this object. */
@@ -269,17 +273,14 @@ export declare const WorkflowFloatParameterSchema: Schema.Struct<{
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  /** Relative horizontal position of the step's node when rendered in the workflow editor. */
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  left: typeof Schema.Number;
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  }>]>>;
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- /** Must be ``float``. */
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- type: Schema.Literal<["float"]>;
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+ /** Must be ``integer`` or ``int``. */
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+ type: Schema.Literal<["integer", "int"]>;
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  min: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
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  max: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
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  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
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  }>;
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- export type WorkflowFloatParameter = typeof WorkflowFloatParameterSchema.Type;
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- /**
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- * A boolean input parameter for a Galaxy workflow.
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- */
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- export declare const WorkflowBooleanParameterSchema: Schema.Struct<{
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+ export type WorkflowIntegerParameter = typeof WorkflowIntegerParameterSchema.Type;
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+ export declare const BaseDataParameterSchema: Schema.Struct<{
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  /** The unique identifier for this object. */
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  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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  /** A short, human-readable label of this object. */
@@ -294,27 +295,11 @@ export declare const WorkflowBooleanParameterSchema: Schema.Struct<{
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  /** Relative horizontal position of the step's node when rendered in the workflow editor. */
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  left: typeof Schema.Number;
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  }>]>>;
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- /** Must be ``boolean``. */
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- type: Schema.Literal<["boolean"]>;
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+ /** Specify datatype extensions for valid input datasets. */
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+ format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
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  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
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  }>;
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- export type WorkflowBooleanParameter = typeof WorkflowBooleanParameterSchema.Type;
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- /**
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- * Describes one field of a `record` collection input.
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- Used in `fields` on a `collection_type` containing `record` (e.g.
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- `record`, `list:record`, `sample_sheet:record`). Mirrors a subset of
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- the CWL `InputRecordSchema` shape that Galaxy persists on
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- `DatasetCollection.fields`.
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- */
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- export declare const RecordFieldDefinitionSchema: Schema.Struct<{
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- /** Field name. Must equal the corresponding element identifier in the materialized record collection. */
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- name: typeof Schema.String;
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- /** Field value type. A subset of the CWL primitive types: `File`, `null`, `boolean`, `int`, `float`, `string`. May be a list to express a union (e.g. `["File", "null"]` for an optional file). */
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- type: Schema.Union<[Schema.Literal<["File", "null", "boolean", "int", "float", "string"]>, Schema.Array$<Schema.Literal<["File", "null", "boolean", "int", "float", "string"]>>]>;
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- /** Optional Galaxy datatype hint for `File`-typed fields. */
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- format: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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- }>;
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- export type RecordFieldDefinition = typeof RecordFieldDefinitionSchema.Type;
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+ export type BaseDataParameter = typeof BaseDataParameterSchema.Type;
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  /**
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  * Describes one column of a sample-sheet collection input.
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  Used in `column_definitions` on a `collection_type: sample_sheet[:<type>]`
@@ -339,26 +324,22 @@ export declare const SampleSheetColumnDefinitionSchema: Schema.Struct<{
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  suggestions: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number, typeof Schema.Number, typeof Schema.Boolean]>>]>>;
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  }>;
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  export type SampleSheetColumnDefinition = typeof SampleSheetColumnDefinitionSchema.Type;
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- export declare const BaseDataParameterSchema: Schema.Struct<{
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- /** The unique identifier for this object. */
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- id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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- /** A short, human-readable label of this object. */
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- label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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- /** A documentation string for this object, or an array of strings which should be concatenated. */
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- doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
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- /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
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- default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
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- position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
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- /** Relative vertical position of the step's node when rendered in the workflow editor. */
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- top: typeof Schema.Number;
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- /** Relative horizontal position of the step's node when rendered in the workflow editor. */
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- left: typeof Schema.Number;
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- }>]>>;
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- /** Specify datatype extensions for valid input datasets. */
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- format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
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- optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
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+ /**
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+ * Describes one field of a `record` collection input.
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+ Used in `fields` on a `collection_type` containing `record` (e.g.
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+ `record`, `list:record`, `sample_sheet:record`). Mirrors a subset of
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+ the CWL `InputRecordSchema` shape that Galaxy persists on
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+ `DatasetCollection.fields`.
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+ */
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+ export declare const RecordFieldDefinitionSchema: Schema.Struct<{
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+ /** Field name. Must equal the corresponding element identifier in the materialized record collection. */
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+ name: typeof Schema.String;
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+ /** Field value type. A subset of the CWL primitive types: `File`, `null`, `boolean`, `int`, `float`, `string`. May be a list to express a union (e.g. `["File", "null"]` for an optional file). */
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+ type: Schema.Union<[Schema.Literal<["File", "null", "boolean", "int", "float", "string"]>, Schema.Array$<Schema.Literal<["File", "null", "boolean", "int", "float", "string"]>>]>;
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+ /** Optional Galaxy datatype hint for `File`-typed fields. */
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+ format: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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  }>;
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- export type BaseDataParameter = typeof BaseDataParameterSchema.Type;
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+ export type RecordFieldDefinition = typeof RecordFieldDefinitionSchema.Type;
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  /**
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  * A collection input parameter for a Galaxy workflow - represents a dataset collection.
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  */
@@ -415,11 +396,9 @@ export declare const WorkflowCollectionParameterSchema: Schema.Struct<{
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  }>;
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  export type WorkflowCollectionParameter = typeof WorkflowCollectionParameterSchema.Type;
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  /**
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- * A scalar integer workflow parameter. Normalized gxformat2 output uses
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- ``type: int``. ``type: integer`` is accepted for compatibility with native
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- Galaxy parameter state and Galaxy tool XML terminology.
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+ * A float input parameter for a Galaxy workflow.
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  */
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- export declare const WorkflowIntegerParameterSchema: Schema.Struct<{
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+ export declare const WorkflowFloatParameterSchema: Schema.Struct<{
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  /** The unique identifier for this object. */
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  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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  /** A short, human-readable label of this object. */
@@ -434,41 +413,13 @@ export declare const WorkflowIntegerParameterSchema: Schema.Struct<{
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  /** Relative horizontal position of the step's node when rendered in the workflow editor. */
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  left: typeof Schema.Number;
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  }>]>>;
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- /** Must be ``integer`` or ``int``. */
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- type: Schema.Literal<["integer", "int"]>;
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+ /** Must be ``float``. */
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+ type: Schema.Literal<["float"]>;
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  min: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
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  max: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
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  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
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  }>;
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- export type WorkflowIntegerParameter = typeof WorkflowIntegerParameterSchema.Type;
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- /**
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- * A data input parameter for a Galaxy workflow. Represents one Galaxy dataset.
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- Normalized gxformat2 output uses ``type: data``. ``type: File`` is accepted as
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- an alias, but should not be confused with workflow test job syntax where
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- ``type: File`` means stage a file as test input data.
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- */
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- export declare const WorkflowDataParameterSchema: Schema.Struct<{
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- /** The unique identifier for this object. */
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- id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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- /** A short, human-readable label of this object. */
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- label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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- /** A documentation string for this object, or an array of strings which should be concatenated. */
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- doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
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- /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
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- default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
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- position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
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- /** Relative vertical position of the step's node when rendered in the workflow editor. */
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- top: typeof Schema.Number;
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- /** Relative horizontal position of the step's node when rendered in the workflow editor. */
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- left: typeof Schema.Number;
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- }>]>>;
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- /** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
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- optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
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- /** Specify valid types of data that may be assigned to this parameter. */
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- type: Schema.optional<Schema.Union<[Schema.Literal<["data", "File"]>, typeof Schema.Null]>>;
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- format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
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- }>;
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- export type WorkflowDataParameter = typeof WorkflowDataParameterSchema.Type;
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+ export type WorkflowFloatParameter = typeof WorkflowFloatParameterSchema.Type;
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  /**
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  * A `{value, label}` option used in `restrictions` or `suggestions` on a
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  text workflow parameter. Plain strings are also accepted in those
@@ -481,6 +432,21 @@ export declare const WorkflowTextOptionSchema: Schema.Struct<{
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  label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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  }>;
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  export type WorkflowTextOption = typeof WorkflowTextOptionSchema.Type;
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+ /**
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+ * A validator restricting values of a text workflow parameter. Persisted
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+ in native Galaxy as an entry of the input step's `tool_state.validators`.
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+ */
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+ export declare const WorkflowTextValidatorSchema: Schema.Struct<{
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+ /** Validator type. Only `regex` is supported. */
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+ type: Schema.Literal<["regex"]>;
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+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
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+ expression: typeof Schema.String;
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+ /** Message shown when a value fails validation. */
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+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
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+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
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+ }>;
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+ export type WorkflowTextValidator = typeof WorkflowTextValidatorSchema.Type;
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  /**
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  * A scalar text workflow parameter. Normalized gxformat2 output uses
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  ``type: string``. ``type: text`` is accepted for compatibility with native
@@ -519,9 +485,107 @@ export declare const WorkflowTextParameterSchema: Schema.Struct<{
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  }>]>>]>>;
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  /** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
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  restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
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+ /** Validators applied to values supplied for this input. */
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+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
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+ /** Validator type. Only `regex` is supported. */
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+ type: Schema.Literal<["regex"]>;
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+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
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+ expression: typeof Schema.String;
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+ /** Message shown when a value fails validation. */
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+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
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+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
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+ }>>]>>;
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  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
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  }>;
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  export type WorkflowTextParameter = typeof WorkflowTextParameterSchema.Type;
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+ /**
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+ * A data input parameter for a Galaxy workflow. Represents one Galaxy dataset.
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+ Normalized gxformat2 output uses ``type: data``. ``type: File`` is accepted as
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+ an alias, but should not be confused with workflow test job syntax where
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+ ``type: File`` means stage a file as test input data.
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+ */
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+ export declare const WorkflowDataParameterSchema: Schema.Struct<{
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+ /** The unique identifier for this object. */
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+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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+ /** A short, human-readable label of this object. */
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+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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+ /** A documentation string for this object, or an array of strings which should be concatenated. */
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+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
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+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
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+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
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+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
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+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
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+ top: typeof Schema.Number;
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+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
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+ left: typeof Schema.Number;
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+ }>]>>;
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+ /** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
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+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
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+ /** Specify valid types of data that may be assigned to this parameter. */
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+ type: Schema.optional<Schema.Union<[Schema.Literal<["data", "File"]>, typeof Schema.Null]>>;
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+ format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
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+ }>;
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+ export type WorkflowDataParameter = typeof WorkflowDataParameterSchema.Type;
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+ /**
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+ * A color input parameter for a Galaxy workflow. The value is a color
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+ string such as ``#ff0000``.
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+ */
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+ export declare const WorkflowColorParameterSchema: Schema.Struct<{
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+ /** The unique identifier for this object. */
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+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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+ /** A short, human-readable label of this object. */
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+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
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+ /** A documentation string for this object, or an array of strings which should be concatenated. */
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+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
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+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
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+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
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+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
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+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
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+ top: typeof Schema.Number;
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+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
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+ left: typeof Schema.Number;
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+ }>]>>;
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+ /** Must be ``color``. */
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+ type: Schema.Literal<["color"]>;
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+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
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+ }>;
553
+ export type WorkflowColorParameter = typeof WorkflowColorParameterSchema.Type;
554
+ /**
555
+ * A directory URI input parameter for a Galaxy workflow. The value is a
556
+ URI string such as ``s3://bucket/path/``.
557
+ */
558
+ export declare const WorkflowDirectoryUriParameterSchema: Schema.Struct<{
559
+ /** The unique identifier for this object. */
560
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
561
+ /** A short, human-readable label of this object. */
562
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
563
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
564
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
565
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
566
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
567
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
568
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
569
+ top: typeof Schema.Number;
570
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
571
+ left: typeof Schema.Number;
572
+ }>]>>;
573
+ /** Must be ``directory_uri``. */
574
+ type: Schema.Literal<["directory_uri"]>;
575
+ /** Validators applied to values supplied for this input. */
576
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
577
+ /** Validator type. Only `regex` is supported. */
578
+ type: Schema.Literal<["regex"]>;
579
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
580
+ expression: typeof Schema.String;
581
+ /** Message shown when a value fails validation. */
582
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
583
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
584
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
585
+ }>>]>>;
586
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
587
+ }>;
588
+ export type WorkflowDirectoryUriParameter = typeof WorkflowDirectoryUriParameterSchema.Type;
525
589
  /**
526
590
  * Describe an output parameter of a workflow. The parameter must be
527
591
  connected to one parameter defined in the workflow that
@@ -538,9 +602,32 @@ export declare const WorkflowOutputParameterSchema: Schema.Struct<{
538
602
  /** Specifies workflow parameter that supply the value of to the output parameter. */
539
603
  outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
540
604
  /** Specify valid types of data that may be assigned to this parameter. */
541
- type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
605
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
542
606
  }>;
543
607
  export type WorkflowOutputParameter = typeof WorkflowOutputParameterSchema.Type;
608
+ /**
609
+ * A boolean input parameter for a Galaxy workflow.
610
+ */
611
+ export declare const WorkflowBooleanParameterSchema: Schema.Struct<{
612
+ /** The unique identifier for this object. */
613
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
614
+ /** A short, human-readable label of this object. */
615
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
616
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
617
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
618
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
619
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
620
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
621
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
622
+ top: typeof Schema.Number;
623
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
624
+ left: typeof Schema.Number;
625
+ }>]>>;
626
+ /** Must be ``boolean``. */
627
+ type: Schema.Literal<["boolean"]>;
628
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
629
+ }>;
630
+ export type WorkflowBooleanParameter = typeof WorkflowBooleanParameterSchema.Type;
544
631
  /**
545
632
  * The base executable type in CWL is the `Process` object defined by the
546
633
  document. Note that the `Process` object is abstract and cannot be
@@ -691,6 +778,17 @@ export declare const ProcessSchema: Schema.Struct<{
691
778
  }>]>>]>>;
692
779
  /** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
693
780
  restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
781
+ /** Validators applied to values supplied for this input. */
782
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
783
+ /** Validator type. Only `regex` is supported. */
784
+ type: Schema.Literal<["regex"]>;
785
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
786
+ expression: typeof Schema.String;
787
+ /** Message shown when a value fails validation. */
788
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
789
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
790
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
791
+ }>>]>>;
694
792
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
695
793
  }>, Schema.Struct<{
696
794
  /** The unique identifier for this object. */
@@ -710,6 +808,53 @@ export declare const ProcessSchema: Schema.Struct<{
710
808
  /** Must be ``boolean``. */
711
809
  type: Schema.Literal<["boolean"]>;
712
810
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
811
+ }>, Schema.Struct<{
812
+ /** The unique identifier for this object. */
813
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
814
+ /** A short, human-readable label of this object. */
815
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
816
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
817
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
818
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
819
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
820
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
821
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
822
+ top: typeof Schema.Number;
823
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
824
+ left: typeof Schema.Number;
825
+ }>]>>;
826
+ /** Must be ``color``. */
827
+ type: Schema.Literal<["color"]>;
828
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
829
+ }>, Schema.Struct<{
830
+ /** The unique identifier for this object. */
831
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
832
+ /** A short, human-readable label of this object. */
833
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
834
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
835
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
836
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
837
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
838
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
839
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
840
+ top: typeof Schema.Number;
841
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
842
+ left: typeof Schema.Number;
843
+ }>]>>;
844
+ /** Must be ``directory_uri``. */
845
+ type: Schema.Literal<["directory_uri"]>;
846
+ /** Validators applied to values supplied for this input. */
847
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
848
+ /** Validator type. Only `regex` is supported. */
849
+ type: Schema.Literal<["regex"]>;
850
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
851
+ expression: typeof Schema.String;
852
+ /** Message shown when a value fails validation. */
853
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
854
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
855
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
856
+ }>>]>>;
857
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
713
858
  }>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
714
859
  /** The unique identifier for this object. */
715
860
  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
@@ -853,6 +998,17 @@ export declare const ProcessSchema: Schema.Struct<{
853
998
  }>]>>]>>;
854
999
  /** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
855
1000
  restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1001
+ /** Validators applied to values supplied for this input. */
1002
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
1003
+ /** Validator type. Only `regex` is supported. */
1004
+ type: Schema.Literal<["regex"]>;
1005
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
1006
+ expression: typeof Schema.String;
1007
+ /** Message shown when a value fails validation. */
1008
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1009
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
1010
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1011
+ }>>]>>;
856
1012
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
857
1013
  }>, Schema.Struct<{
858
1014
  /** The unique identifier for this object. */
@@ -872,6 +1028,53 @@ export declare const ProcessSchema: Schema.Struct<{
872
1028
  /** Must be ``boolean``. */
873
1029
  type: Schema.Literal<["boolean"]>;
874
1030
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1031
+ }>, Schema.Struct<{
1032
+ /** The unique identifier for this object. */
1033
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1034
+ /** A short, human-readable label of this object. */
1035
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1036
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
1037
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1038
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
1039
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
1040
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
1041
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
1042
+ top: typeof Schema.Number;
1043
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
1044
+ left: typeof Schema.Number;
1045
+ }>]>>;
1046
+ /** Must be ``color``. */
1047
+ type: Schema.Literal<["color"]>;
1048
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1049
+ }>, Schema.Struct<{
1050
+ /** The unique identifier for this object. */
1051
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1052
+ /** A short, human-readable label of this object. */
1053
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1054
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
1055
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1056
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
1057
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
1058
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
1059
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
1060
+ top: typeof Schema.Number;
1061
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
1062
+ left: typeof Schema.Number;
1063
+ }>]>>;
1064
+ /** Must be ``directory_uri``. */
1065
+ type: Schema.Literal<["directory_uri"]>;
1066
+ /** Validators applied to values supplied for this input. */
1067
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
1068
+ /** Validator type. Only `regex` is supported. */
1069
+ type: Schema.Literal<["regex"]>;
1070
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
1071
+ expression: typeof Schema.String;
1072
+ /** Message shown when a value fails validation. */
1073
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1074
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
1075
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1076
+ }>>]>>;
1077
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
875
1078
  }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
876
1079
  /** Defines the parameters representing the output of the process. May be used to generate and/or validate the output object. */
877
1080
  outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
@@ -884,7 +1087,7 @@ export declare const ProcessSchema: Schema.Struct<{
884
1087
  /** Specifies workflow parameter that supply the value of to the output parameter. */
885
1088
  outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
886
1089
  /** Specify valid types of data that may be assigned to this parameter. */
887
- type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
1090
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
888
1091
  }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
889
1092
  /** The unique identifier for this object. */
890
1093
  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
@@ -895,7 +1098,7 @@ export declare const ProcessSchema: Schema.Struct<{
895
1098
  /** Specifies workflow parameter that supply the value of to the output parameter. */
896
1099
  outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
897
1100
  /** Specify valid types of data that may be assigned to this parameter. */
898
- type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
1101
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
899
1102
  }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
900
1103
  doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
901
1104
  label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
@@ -964,7 +1167,7 @@ export declare const WorkflowInputParameterSchema: Schema.Struct<{
964
1167
  /** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
965
1168
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
966
1169
  /** Specify valid types of data that may be assigned to this parameter. */
967
- type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>>]>>;
1170
+ type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>>]>>;
968
1171
  /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
969
1172
  collection_type: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
970
1173
  /** Column schema for sample-sheet collection inputs. Only meaningful when `collection_type` begins with `sample_sheet`. */
@@ -1011,11 +1214,38 @@ export declare const WorkflowInputParameterSchema: Schema.Struct<{
1011
1214
  }>]>>]>>;
1012
1215
  /** For text-typed inputs - derive runtime choices from connected tool/subworkflow select inputs. */
1013
1216
  restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1217
+ /** Validators for text-typed and ``directory_uri`` inputs. See `WorkflowTextParameter.validators`. */
1218
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
1219
+ /** Validator type. Only `regex` is supported. */
1220
+ type: Schema.Literal<["regex"]>;
1221
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
1222
+ expression: typeof Schema.String;
1223
+ /** Message shown when a value fails validation. */
1224
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1225
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
1226
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1227
+ }>>]>>;
1014
1228
  min: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
1015
1229
  max: Schema.optional<Schema.Union<[typeof Schema.Number, typeof Schema.Null]>>;
1016
1230
  format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
1017
1231
  }>;
1018
1232
  export type WorkflowInputParameter = typeof WorkflowInputParameterSchema.Type;
1233
+ export declare const SinkSchema: Schema.Struct<{
1234
+ /** Specifies one or more workflow parameters that will provide input to the underlying step parameter. */
1235
+ source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1236
+ }>;
1237
+ export type Sink = typeof SinkSchema.Type;
1238
+ /**
1239
+ * TODO:
1240
+ */
1241
+ export declare const WorkflowStepInputSchema: Schema.Struct<{
1242
+ /** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`. The default must be applied prior to scattering or evaluating `va... */
1243
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
1244
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1245
+ source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1246
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1247
+ }>;
1248
+ export type WorkflowStepInput = typeof WorkflowStepInputSchema.Type;
1019
1249
  /**
1020
1250
  * Associate an output parameter of the underlying process with a workflow
1021
1251
  parameter. The workflow parameter (given in the `id` field) be may be used
@@ -1037,22 +1267,6 @@ export declare const WorkflowStepOutputSchema: Schema.Struct<{
1037
1267
  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1038
1268
  }>;
1039
1269
  export type WorkflowStepOutput = typeof WorkflowStepOutputSchema.Type;
1040
- export declare const SinkSchema: Schema.Struct<{
1041
- /** Specifies one or more workflow parameters that will provide input to the underlying step parameter. */
1042
- source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1043
- }>;
1044
- export type Sink = typeof SinkSchema.Type;
1045
- /**
1046
- * TODO:
1047
- */
1048
- export declare const WorkflowStepInputSchema: Schema.Struct<{
1049
- /** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`. The default must be applied prior to scattering or evaluating `va... */
1050
- default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
1051
- label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1052
- source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1053
- id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1054
- }>;
1055
- export type WorkflowStepInput = typeof WorkflowStepInputSchema.Type;
1056
1270
  /**
1057
1271
  * Base fields shared by all creator types, corresponding to schema.org
1058
1272
  Thing properties common to both Person and Organization.
@@ -1096,15 +1310,6 @@ export declare const CreatorOrganizationSchema: Schema.Struct<{
1096
1310
  faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1097
1311
  }>;
1098
1312
  export type CreatorOrganization = typeof CreatorOrganizationSchema.Type;
1099
- /**
1100
- * Definition of an invocation report for this workflow. Currently the only
1101
- field is 'markdown'.
1102
- */
1103
- export declare const ReportSchema: Schema.Struct<{
1104
- /** Galaxy flavored Markdown to define an invocation report. */
1105
- markdown: typeof Schema.String;
1106
- }>;
1107
- export type Report = typeof ReportSchema.Type;
1108
1313
  /**
1109
1314
  * Base fields shared by all comment types.
1110
1315
  */
@@ -1161,6 +1366,35 @@ export declare const CreatorPersonSchema: Schema.Struct<{
1161
1366
  faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1162
1367
  }>;
1163
1368
  export type CreatorPerson = typeof CreatorPersonSchema.Type;
1369
+ /**
1370
+ * A plain text annotation in the workflow editor.
1371
+ */
1372
+ export declare const TextCommentSchema: Schema.Struct<{
1373
+ /** Comment type (``text``). */
1374
+ type: Schema.Literal<["text"]>;
1375
+ /** The text content. */
1376
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1377
+ /** Whether the text is displayed in bold. */
1378
+ bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1379
+ /** Whether the text is displayed in italic. */
1380
+ italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1381
+ /** Font size of the text. */
1382
+ text_size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
1383
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
1384
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
1385
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1386
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1387
+ }>;
1388
+ export type TextComment = typeof TextCommentSchema.Type;
1389
+ /**
1390
+ * Definition of an invocation report for this workflow. Currently the only
1391
+ field is 'markdown'.
1392
+ */
1393
+ export declare const ReportSchema: Schema.Struct<{
1394
+ /** Galaxy flavored Markdown to define an invocation report. */
1395
+ markdown: typeof Schema.String;
1396
+ }>;
1397
+ export type Report = typeof ReportSchema.Type;
1164
1398
  /**
1165
1399
  * A rectangular grouping box that visually contains steps and other comments.
1166
1400
  */
@@ -1195,26 +1429,6 @@ export declare const FreehandCommentSchema: Schema.Struct<{
1195
1429
  label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1196
1430
  }>;
1197
1431
  export type FreehandComment = typeof FreehandCommentSchema.Type;
1198
- /**
1199
- * A plain text annotation in the workflow editor.
1200
- */
1201
- export declare const TextCommentSchema: Schema.Struct<{
1202
- /** Comment type (``text``). */
1203
- type: Schema.Literal<["text"]>;
1204
- /** The text content. */
1205
- text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1206
- /** Whether the text is displayed in bold. */
1207
- bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1208
- /** Whether the text is displayed in italic. */
1209
- italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1210
- /** Font size of the text. */
1211
- text_size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
1212
- position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
1213
- size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
1214
- color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1215
- label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1216
- }>;
1217
- export type TextComment = typeof TextCommentSchema.Type;
1218
1432
  /**
1219
1433
  * A Galaxy workflow description. This record corresponds to the description of a workflow that should be executable
1220
1434
  on a Galaxy server that includes the contained tool definitions.
@@ -1528,6 +1742,17 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
1528
1742
  }>]>>]>>;
1529
1743
  /** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
1530
1744
  restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1745
+ /** Validators applied to values supplied for this input. */
1746
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
1747
+ /** Validator type. Only `regex` is supported. */
1748
+ type: Schema.Literal<["regex"]>;
1749
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
1750
+ expression: typeof Schema.String;
1751
+ /** Message shown when a value fails validation. */
1752
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1753
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
1754
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1755
+ }>>]>>;
1531
1756
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1532
1757
  }>, Schema.Struct<{
1533
1758
  /** The unique identifier for this object. */
@@ -1547,6 +1772,53 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
1547
1772
  /** Must be ``boolean``. */
1548
1773
  type: Schema.Literal<["boolean"]>;
1549
1774
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1775
+ }>, Schema.Struct<{
1776
+ /** The unique identifier for this object. */
1777
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1778
+ /** A short, human-readable label of this object. */
1779
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1780
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
1781
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1782
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
1783
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
1784
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
1785
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
1786
+ top: typeof Schema.Number;
1787
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
1788
+ left: typeof Schema.Number;
1789
+ }>]>>;
1790
+ /** Must be ``color``. */
1791
+ type: Schema.Literal<["color"]>;
1792
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1793
+ }>, Schema.Struct<{
1794
+ /** The unique identifier for this object. */
1795
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1796
+ /** A short, human-readable label of this object. */
1797
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1798
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
1799
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1800
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
1801
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
1802
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
1803
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
1804
+ top: typeof Schema.Number;
1805
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
1806
+ left: typeof Schema.Number;
1807
+ }>]>>;
1808
+ /** Must be ``directory_uri``. */
1809
+ type: Schema.Literal<["directory_uri"]>;
1810
+ /** Validators applied to values supplied for this input. */
1811
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
1812
+ /** Validator type. Only `regex` is supported. */
1813
+ type: Schema.Literal<["regex"]>;
1814
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
1815
+ expression: typeof Schema.String;
1816
+ /** Message shown when a value fails validation. */
1817
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1818
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
1819
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1820
+ }>>]>>;
1821
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1550
1822
  }>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
1551
1823
  /** The unique identifier for this object. */
1552
1824
  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
@@ -1690,6 +1962,17 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
1690
1962
  }>]>>]>>;
1691
1963
  /** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
1692
1964
  restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1965
+ /** Validators applied to values supplied for this input. */
1966
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
1967
+ /** Validator type. Only `regex` is supported. */
1968
+ type: Schema.Literal<["regex"]>;
1969
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
1970
+ expression: typeof Schema.String;
1971
+ /** Message shown when a value fails validation. */
1972
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1973
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
1974
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
1975
+ }>>]>>;
1693
1976
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1694
1977
  }>, Schema.Struct<{
1695
1978
  /** The unique identifier for this object. */
@@ -1709,6 +1992,53 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
1709
1992
  /** Must be ``boolean``. */
1710
1993
  type: Schema.Literal<["boolean"]>;
1711
1994
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1995
+ }>, Schema.Struct<{
1996
+ /** The unique identifier for this object. */
1997
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1998
+ /** A short, human-readable label of this object. */
1999
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2000
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
2001
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
2002
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
2003
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
2004
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
2005
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
2006
+ top: typeof Schema.Number;
2007
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
2008
+ left: typeof Schema.Number;
2009
+ }>]>>;
2010
+ /** Must be ``color``. */
2011
+ type: Schema.Literal<["color"]>;
2012
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
2013
+ }>, Schema.Struct<{
2014
+ /** The unique identifier for this object. */
2015
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2016
+ /** A short, human-readable label of this object. */
2017
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2018
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
2019
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
2020
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
2021
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
2022
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
2023
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
2024
+ top: typeof Schema.Number;
2025
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
2026
+ left: typeof Schema.Number;
2027
+ }>]>>;
2028
+ /** Must be ``directory_uri``. */
2029
+ type: Schema.Literal<["directory_uri"]>;
2030
+ /** Validators applied to values supplied for this input. */
2031
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
2032
+ /** Validator type. Only `regex` is supported. */
2033
+ type: Schema.Literal<["regex"]>;
2034
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
2035
+ expression: typeof Schema.String;
2036
+ /** Message shown when a value fails validation. */
2037
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2038
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
2039
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
2040
+ }>>]>>;
2041
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1712
2042
  }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
1713
2043
  outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
1714
2044
  /** The unique identifier for this object. */
@@ -1720,7 +2050,7 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
1720
2050
  /** Specifies workflow parameter that supply the value of to the output parameter. */
1721
2051
  outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1722
2052
  /** Specify valid types of data that may be assigned to this parameter. */
1723
- type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
2053
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
1724
2054
  }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
1725
2055
  /** The unique identifier for this object. */
1726
2056
  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
@@ -1731,7 +2061,7 @@ export declare const GalaxyWorkflowSchema: Schema.Struct<{
1731
2061
  /** Specifies workflow parameter that supply the value of to the output parameter. */
1732
2062
  outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1733
2063
  /** Specify valid types of data that may be assigned to this parameter. */
1734
- type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
2064
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
1735
2065
  }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
1736
2066
  }>;
1737
2067
  export type GalaxyWorkflow = typeof GalaxyWorkflowSchema.Type;
@@ -2095,6 +2425,17 @@ export declare const WorkflowStepSchema: Schema.Struct<{
2095
2425
  }>]>>]>>;
2096
2426
  /** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
2097
2427
  restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
2428
+ /** Validators applied to values supplied for this input. */
2429
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
2430
+ /** Validator type. Only `regex` is supported. */
2431
+ type: Schema.Literal<["regex"]>;
2432
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
2433
+ expression: typeof Schema.String;
2434
+ /** Message shown when a value fails validation. */
2435
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2436
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
2437
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
2438
+ }>>]>>;
2098
2439
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
2099
2440
  }>, Schema.Struct<{
2100
2441
  /** The unique identifier for this object. */
@@ -2114,6 +2455,53 @@ export declare const WorkflowStepSchema: Schema.Struct<{
2114
2455
  /** Must be ``boolean``. */
2115
2456
  type: Schema.Literal<["boolean"]>;
2116
2457
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
2458
+ }>, Schema.Struct<{
2459
+ /** The unique identifier for this object. */
2460
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2461
+ /** A short, human-readable label of this object. */
2462
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2463
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
2464
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
2465
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
2466
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
2467
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
2468
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
2469
+ top: typeof Schema.Number;
2470
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
2471
+ left: typeof Schema.Number;
2472
+ }>]>>;
2473
+ /** Must be ``color``. */
2474
+ type: Schema.Literal<["color"]>;
2475
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
2476
+ }>, Schema.Struct<{
2477
+ /** The unique identifier for this object. */
2478
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2479
+ /** A short, human-readable label of this object. */
2480
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2481
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
2482
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
2483
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
2484
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
2485
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
2486
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
2487
+ top: typeof Schema.Number;
2488
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
2489
+ left: typeof Schema.Number;
2490
+ }>]>>;
2491
+ /** Must be ``directory_uri``. */
2492
+ type: Schema.Literal<["directory_uri"]>;
2493
+ /** Validators applied to values supplied for this input. */
2494
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
2495
+ /** Validator type. Only `regex` is supported. */
2496
+ type: Schema.Literal<["regex"]>;
2497
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
2498
+ expression: typeof Schema.String;
2499
+ /** Message shown when a value fails validation. */
2500
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2501
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
2502
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
2503
+ }>>]>>;
2504
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
2117
2505
  }>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
2118
2506
  /** The unique identifier for this object. */
2119
2507
  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
@@ -2257,6 +2645,17 @@ export declare const WorkflowStepSchema: Schema.Struct<{
2257
2645
  }>]>>]>>;
2258
2646
  /** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
2259
2647
  restrictOnConnections: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
2648
+ /** Validators applied to values supplied for this input. */
2649
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
2650
+ /** Validator type. Only `regex` is supported. */
2651
+ type: Schema.Literal<["regex"]>;
2652
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
2653
+ expression: typeof Schema.String;
2654
+ /** Message shown when a value fails validation. */
2655
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2656
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
2657
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
2658
+ }>>]>>;
2260
2659
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
2261
2660
  }>, Schema.Struct<{
2262
2661
  /** The unique identifier for this object. */
@@ -2276,6 +2675,53 @@ export declare const WorkflowStepSchema: Schema.Struct<{
2276
2675
  /** Must be ``boolean``. */
2277
2676
  type: Schema.Literal<["boolean"]>;
2278
2677
  optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
2678
+ }>, Schema.Struct<{
2679
+ /** The unique identifier for this object. */
2680
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2681
+ /** A short, human-readable label of this object. */
2682
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2683
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
2684
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
2685
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
2686
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
2687
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
2688
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
2689
+ top: typeof Schema.Number;
2690
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
2691
+ left: typeof Schema.Number;
2692
+ }>]>>;
2693
+ /** Must be ``color``. */
2694
+ type: Schema.Literal<["color"]>;
2695
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
2696
+ }>, Schema.Struct<{
2697
+ /** The unique identifier for this object. */
2698
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2699
+ /** A short, human-readable label of this object. */
2700
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2701
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
2702
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
2703
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
2704
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
2705
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
2706
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
2707
+ top: typeof Schema.Number;
2708
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
2709
+ left: typeof Schema.Number;
2710
+ }>]>>;
2711
+ /** Must be ``directory_uri``. */
2712
+ type: Schema.Literal<["directory_uri"]>;
2713
+ /** Validators applied to values supplied for this input. */
2714
+ validators: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Struct<{
2715
+ /** Validator type. Only `regex` is supported. */
2716
+ type: Schema.Literal<["regex"]>;
2717
+ /** Regular expression matched from the start of the value. End it with `$` to require a complete-value match. */
2718
+ expression: typeof Schema.String;
2719
+ /** Message shown when a value fails validation. */
2720
+ message: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2721
+ /** Reject matching values instead of values that do not match. Defaults to `false`. */
2722
+ negate: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
2723
+ }>>]>>;
2724
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
2279
2725
  }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
2280
2726
  outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
2281
2727
  /** The unique identifier for this object. */
@@ -2287,7 +2733,7 @@ export declare const WorkflowStepSchema: Schema.Struct<{
2287
2733
  /** Specifies workflow parameter that supply the value of to the output parameter. */
2288
2734
  outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2289
2735
  /** Specify valid types of data that may be assigned to this parameter. */
2290
- type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
2736
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
2291
2737
  }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
2292
2738
  /** The unique identifier for this object. */
2293
2739
  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
@@ -2298,7 +2744,7 @@ export declare const WorkflowStepSchema: Schema.Struct<{
2298
2744
  /** Specifies workflow parameter that supply the value of to the output parameter. */
2299
2745
  outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2300
2746
  /** Specify valid types of data that may be assigned to this parameter. */
2301
- type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
2747
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection", "color", "directory_uri"]>]>>;
2302
2748
  }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
2303
2749
  }>, typeof Schema.String, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
2304
2750
  runtime_inputs: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
@@ -2329,10 +2775,12 @@ export declare const WorkflowStepSchema: Schema.Struct<{
2329
2775
  id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
2330
2776
  }>;
2331
2777
  export type WorkflowStep = typeof WorkflowStepSchema.Type;
2332
- export declare function isWorkflowDataParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowDataParameter;
2333
- export declare function isWorkflowCollectionParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowCollectionParameter;
2334
- export declare function isWorkflowIntegerParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowIntegerParameter;
2335
- export declare function isWorkflowTextParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowTextParameter;
2336
- export declare function isWorkflowFloatParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowFloatParameter;
2337
- export declare function isWorkflowBooleanParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter): v is WorkflowBooleanParameter;
2778
+ export declare function isWorkflowDataParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowDataParameter;
2779
+ export declare function isWorkflowCollectionParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowCollectionParameter;
2780
+ export declare function isWorkflowIntegerParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowIntegerParameter;
2781
+ export declare function isWorkflowTextParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowTextParameter;
2782
+ export declare function isWorkflowFloatParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowFloatParameter;
2783
+ export declare function isWorkflowBooleanParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowBooleanParameter;
2784
+ export declare function isWorkflowColorParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowColorParameter;
2785
+ export declare function isWorkflowDirectoryUriParameter(v: WorkflowDataParameter | WorkflowCollectionParameter | WorkflowIntegerParameter | WorkflowTextParameter | WorkflowFloatParameter | WorkflowBooleanParameter | WorkflowColorParameter | WorkflowDirectoryUriParameter): v is WorkflowDirectoryUriParameter;
2338
2786
  //# sourceMappingURL=gxformat2.effect.d.ts.map