@fnndsc/chell 4.2.8 → 4.3.1

package/dist/core/dispatch.d.ts

@@ -0,0 +1,48 @@
+/**
+ * Spawns the `chili` CLI as a child process.
+ *
+ * @param command - The command to run (e.g., "feeds").
+ * @param args - The arguments to pass to the command.
+ * @returns A Promise resolving when the child process exits.
+ */
+export declare function chiliCommand_run(command: string, args: string[]): Promise<void>;
+/**
+ * Handles a command entered by the user.
+ *
+ * @param line - The input line.
+ * @returns A Promise that resolves once the command has been processed.
+ */
+export declare function command_handle(line: string): Promise<void>;
+type CommandHandler = (args: string[]) => Promise<void>;
+export declare const COMMAND_HANDLERS: Record<string, CommandHandler>;
+export { COMMAND_HANDLERS_KEYS } from '../command-keys.js';
+/**
+ * Expands `$NAME` and `${NAME}` environment references in one token.
+ *
+ * Applied per token after parsing, so an expanded value can never inject
+ * command separators, pipes or redirects (the structural characters were
+ * already consumed). References to unset variables are left verbatim —
+ * kinder than the shell's silent empty string when a script forgets an
+ * export. Shell-escape lines (`!...`) never reach this point; bash does
+ * its own expansion there.
+ *
+ * @param token - A single parsed command token.
+ * @returns The token with set environment references substituted.
+ */
+export declare function envRefs_expand(token: string): string;
+/**
+ * Dispatches a parsed command to its handler.
+ * Expands environment references in the arguments, then checks
+ * COMMAND_HANDLERS, then /bin plugin names, then falls back to chili.
+ *
+ * @param command - The command name.
+ * @param args - Parsed arguments.
+ */
+export declare function command_dispatch(command: string, args: string[]): Promise<void>;
+/**
+ * Sets the shared stop-on-error flag. Exposed so the boot layer (which owns the
+ * `-e` flag and script execution) can drive the flag that the dispatch layer reads.
+ *
+ * @param value - `true` to abort a batch on the first error.
+ */
+export declare function stopOnError_set(value: boolean): void;

package/dist/core/dispatch.js

@@ -0,0 +1,544 @@
+/**
+ * @file Command parsing and dispatch for the ChELL shell.
+ *
+ * Turns a line of user input into an executed command:
+ * - preprocessing (inline shell escape, semicolon batching, redirects, pipes, wildcards, help)
+ * - the built-in command table and dispatch to built-ins, simulated plugin exec, or `chili`
+ * - output capture for the redirect/pipe paths
+ *
+ * The startup/connection/REPL glue that drives this layer lives in `./boot.js`.
+ *
+ * @module
+ */
+import { writeFileSync, appendFileSync } from 'fs';
+import chalk from 'chalk';
+import { spawn } from 'child_process';
+import { session } from '../session/index.js';
+import { builtin_cd, builtin_ls, builtin_pwd, builtin_connect, builtin_logout, builtin_cat, builtin_cp, builtin_mv, builtin_upload, builtin_pacs, builtin_pipeline, builtin_pull, builtin_query, builtin_cubepath, builtin_rm, builtin_touch, builtin_mkdir, builtin_plugin, builtin_feed, builtin_compute, builtin_tag, builtin_group, builtin_pluginmeta, builtin_plugininstance, builtin_workflow, builtin_download, builtin_edit, builtin_files, builtin_links, builtin_dirs, builtin_context, builtin_parametersofplugin, builtin_physicalmode, builtin_prompt, builtin_timing, builtin_whoami, builtin_whereami, builtin_debug, builtin_help, builtin_tree, builtin_du, builtin_store, error_stripDebugPrefix } from '../builtins/index.js';
+import { builtin_executePlugin } from '../builtins/pluginExecute.js';
+import { builtin_proc } from '../builtins/proc.js';
+import { wildcards_expandAll } from '../builtins/wildcard.js';
+import { help_show, args_checkHasHelpFlag } from '../builtins/help.js';
+import { pluginExecutable_handle } from '../builtins/executable.js';
+import { errorStack, Ok, Err } from '@fnndsc/cumin';
+import { vfs } from '../lib/vfs/vfs.js';
+import { args_tokenize } from '../lib/parser.js';
+import { semicolons_parse } from '../lib/semicolonParser.js';
+import { segment_pipeThrough } from '../lib/pipe.js';
+import { pipes_parse, redirect_parse, redirectTarget_resolve, wildcards_expandCheck, command_shellEscape_detect, } from './preprocess.js';
+import { run as chiliRun } from '@fnndsc/chili/run.js';
+/**
+ * Spawns the `chili` CLI as a child process.
+ *
+ * @param command - The command to run (e.g., "feeds").
+ * @param args - The arguments to pass to the command.
+ * @returns A Promise resolving when the child process exits.
+ */
+export async function chiliCommand_run(command, args) {
+    // Run chili in-process. chili shares this process's cumin connection/context,
+    // so there is no node subprocess to spawn and no per-command startup cost.
+    try {
+        await chiliRun([command, ...args]);
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        console.error(chalk.red(`chili command '${command}' failed: ${message}`));
+    }
+}
+/**
+ * Executes a shell command on the host system (shell escape with ! prefix).
+ *
+ * @param shellCommand - The command to execute on the host shell.
+ * @returns A Promise that resolves when the command completes.
+ */
+async function shellCommand_execute(shellCommand) {
+    return new Promise((resolve) => {
+        const child = spawn(shellCommand, {
+            shell: true,
+            stdio: 'inherit',
+            env: process.env
+        });
+        child.on('close', (code) => {
+            if (code !== null && code !== 0) {
+                console.error(chalk.red(`Shell command exited with code ${code}`));
+            }
+            resolve();
+        });
+        child.on('error', (err) => {
+            console.error(chalk.red(`Failed to execute shell command: ${err.message}`));
+            resolve();
+        });
+    });
+}
+/**
+ * Handles a command entered by the user.
+ *
+ * @param line - The input line.
+ * @returns A Promise that resolves once the command has been processed.
+ */
+export async function command_handle(line) {
+    const trimmedLine = line.trim();
+    if (!trimmedLine)
+        return;
+    // Start timing if enabled
+    const timingEnabled = session.timingEnabled_get();
+    const startTime = timingEnabled ? performance.now() : 0;
+    if (command_shellEscape_detect(trimmedLine)) {
+        await shellEscape_handle(trimmedLine, startTime, timingEnabled);
+        return;
+    }
+    const semicolonResult = await semicolons_handle(trimmedLine, startTime, timingEnabled);
+    if (!semicolonResult.ok) {
+        return;
+    }
+    if (semicolonResult.value)
+        return;
+    const redirectResult = await redirect_handle(trimmedLine, startTime, timingEnabled);
+    if (!redirectResult.ok) {
+        return;
+    }
+    if (redirectResult.value)
+        return;
+    const pipeResult = await pipe_handle(trimmedLine, startTime, timingEnabled);
+    if (!pipeResult.ok) {
+        return;
+    }
+    if (pipeResult.value)
+        return;
+    const tokens = args_tokenize(trimmedLine);
+    if (tokens.length === 0)
+        return;
+    let [command, ...args] = tokens;
+    // Check for --help flag before any processing
+    const helpResult = help_showMaybe(command, args);
+    if (helpResult.ok && helpResult.value) {
+        return;
+    }
+    // Expand wildcards for commands that support it
+    const expandResult = await wildcards_expand(command, args);
+    if (!expandResult.ok) {
+        return;
+    }
+    args = expandResult.value;
+    // Attempt to handle as a simulated plugin execution
+    if (await pluginExecutable_handle(command, args)) {
+        // Display timing if enabled
+        command_timingMaybePrint(startTime, timingEnabled);
+        return;
+    }
+    await command_dispatch(command, args);
+    // Display timing if enabled
+    command_timingMaybePrint(startTime, timingEnabled);
+}
+/**
+ * Captures console output during command execution.
+ *
+ * @param fn - The function to execute while capturing output.
+ * @returns The captured output as a string and buffer.
+ */
+async function output_capture(fn) {
+    const chunks = [];
+    const originalLog = console.log;
+    const originalStdoutWrite = process.stdout.write.bind(process.stdout);
+    // Override console.log and console.error
+    console.log = (...args) => {
+        const text = args.map(arg => typeof arg === 'string' ? arg : JSON.stringify(arg)).join(' ') + '\n';
+        chunks.push(Buffer.from(text, 'utf-8'));
+    };
+    // Override process.stdout.write to capture binary data
+    process.stdout.write = ((chunk) => {
+        if (typeof chunk === 'string') {
+            chunks.push(Buffer.from(chunk, 'utf-8'));
+        }
+        else if (Buffer.isBuffer(chunk)) {
+            chunks.push(chunk);
+        }
+        else if (chunk instanceof Uint8Array) {
+            chunks.push(Buffer.from(chunk));
+        }
+        return true;
+    });
+    try {
+        await fn();
+    }
+    finally {
+        // Restore original console methods and stdout.write
+        console.log = originalLog;
+        process.stdout.write = originalStdoutWrite;
+    }
+    const buffer = Buffer.concat(chunks);
+    const text = buffer.toString('utf-8');
+    return { text, buffer };
+}
+export const COMMAND_HANDLERS = {
+    connect: builtin_connect,
+    logout: builtin_logout,
+    cd: builtin_cd,
+    ls: builtin_ls,
+    pwd: builtin_pwd,
+    cat: builtin_cat,
+    rm: builtin_rm,
+    cp: builtin_cp,
+    mv: builtin_mv,
+    touch: builtin_touch,
+    mkdir: builtin_mkdir,
+    upload: builtin_upload,
+    pacs: builtin_pacs,
+    pipeline: builtin_pipeline,
+    pipelines: builtin_pipeline,
+    pull: builtin_pull,
+    query: builtin_query,
+    cubepath: builtin_cubepath,
+    download: builtin_download,
+    edit: builtin_edit,
+    context: builtin_context,
+    parametersofplugin: builtin_parametersofplugin,
+    physicalmode: builtin_physicalmode,
+    prompt: builtin_prompt,
+    timing: builtin_timing,
+    whoami: builtin_whoami,
+    whereami: builtin_whereami,
+    debug: builtin_debug,
+    help: builtin_help,
+    proc: builtin_proc,
+    tree: builtin_tree,
+    du: builtin_du,
+    store: builtin_store,
+    plugin: builtin_plugin,
+    plugins: builtin_plugin,
+    feed: builtin_feed,
+    feeds: builtin_feed,
+    compute: builtin_compute,
+    computes: builtin_compute,
+    tag: builtin_tag,
+    tags: builtin_tag,
+    group: builtin_group,
+    groups: builtin_group,
+    pluginmeta: builtin_pluginmeta,
+    pluginmetas: builtin_pluginmeta,
+    meta: builtin_pluginmeta,
+    metas: builtin_pluginmeta,
+    plugininstance: builtin_plugininstance,
+    plugininstances: builtin_plugininstance,
+    instance: builtin_plugininstance,
+    instances: builtin_plugininstance,
+    job: builtin_plugininstance,
+    jobs: builtin_plugininstance,
+    workflow: builtin_workflow,
+    workflows: builtin_workflow,
+    files: builtin_files,
+    links: builtin_links,
+    dirs: builtin_dirs,
+    pacsservers: async (args) => {
+        await chiliCommand_run('pacsservers', ['-s', ...args]);
+    },
+    pacsqueries: async (args) => {
+        await chiliCommand_run('pacsqueries', ['-s', ...args]);
+    },
+    pacsretrieve: async (args) => {
+        await chiliCommand_run('pacsretrieve', ['-s', ...args]);
+    }
+};
+export { COMMAND_HANDLERS_KEYS } from '../command-keys.js';
+/**
+ * Prints elapsed time since startTime if timing is enabled.
+ *
+ * @param startTime - Timestamp from `performance.now()` at command start.
+ * @param enabled - Whether timing display is active.
+ */
+function command_timingMaybePrint(startTime, enabled) {
+    if (!enabled)
+        return;
+    const elapsed = performance.now() - startTime;
+    console.log(chalk.gray(`[${elapsed.toFixed(2)}ms]`));
+}
+/**
+ * Handles a pipeline name invoked directly as an executable from /bin.
+ * Routes flag combinations to the appropriate pipeline subcommand:
+ *   --nodes / --parameters → pipeline info
+ *   --source / --readme    → pipeline source
+ *   (bare or --compute)    → pipeline run
+ *
+ * @param name - The pipeline name as typed.
+ * @param args - Arguments following the pipeline name.
+ */
+async function pipelineExecutable_handle(name, args) {
+    if (args.includes('--nodes') || args.includes('--parameters')) {
+        await builtin_pipeline(['info', name]);
+    }
+    else if (args.includes('--source') || args.includes('--readme')) {
+        await builtin_pipeline(['source', name]);
+    }
+    else {
+        await builtin_pipeline(['run', name, ...args]);
+    }
+}
+/**
+ * Expands `$NAME` and `${NAME}` environment references in one token.
+ *
+ * Applied per token after parsing, so an expanded value can never inject
+ * command separators, pipes or redirects (the structural characters were
+ * already consumed). References to unset variables are left verbatim —
+ * kinder than the shell's silent empty string when a script forgets an
+ * export. Shell-escape lines (`!...`) never reach this point; bash does
+ * its own expansion there.
+ *
+ * @param token - A single parsed command token.
+ * @returns The token with set environment references substituted.
+ */
+export function envRefs_expand(token) {
+    return token.replace(/\$(?:\{([A-Za-z_][A-Za-z0-9_]*)\}|([A-Za-z_][A-Za-z0-9_]*))/g, (match, braced, bare) => {
+        const value = process.env[braced ?? bare ?? ''];
+        return value !== undefined ? value : match;
+    });
+}
+/**
+ * Dispatches a parsed command to its handler.
+ * Expands environment references in the arguments, then checks
+ * COMMAND_HANDLERS, then /bin plugin names, then falls back to chili.
+ *
+ * @param command - The command name.
+ * @param args - Parsed arguments.
+ */
+export async function command_dispatch(command, args) {
+    if (command === 'exit') {
+        process.exit(0);
+    }
+    args = args.map(envRefs_expand);
+    const handler = COMMAND_HANDLERS[command];
+    if (handler) {
+        await handler(args);
+        return;
+    }
+    const binResult = await vfs.data_get('/bin');
+    if (binResult.ok) {
+        const pluginItem = binResult.value.find(item => item.name === command && item.type === 'plugin');
+        const pipelineItem = binResult.value.find(item => item.name === command && item.type === 'pipeline');
+        if (pluginItem) {
+            await builtin_executePlugin(command, args);
+            return;
+        }
+        if (pipelineItem) {
+            await pipelineExecutable_handle(command, args);
+            return;
+        }
+    }
+    console.log(chalk.yellow(`Unknown chell command '${command}' -- delegating to chili`));
+    await chiliCommand_run(command, ['-s', ...args]);
+}
+/**
+ * Executes a shell-escaped command and prints timing if enabled.
+ *
+ * @param line - Full input line including the leading `!`.
+ * @param startTime - Timing reference from `performance.now()`.
+ * @param timingEnabled - Whether to print elapsed time after execution.
+ */
+async function shellEscape_handle(line, startTime, timingEnabled) {
+    const shellCommand = line.substring(1).trim();
+    if (!shellCommand)
+        return;
+    await shellCommand_execute(shellCommand);
+    command_timingMaybePrint(startTime, timingEnabled);
+}
+/**
+ * Splits a semicolon-separated command line and executes each segment in sequence.
+ * Returns Ok(true) if the line contained semicolons and was handled, Ok(false) if not.
+ *
+ * @param line - Full input line.
+ * @param startTime - Timing reference.
+ * @param timingEnabled - Whether to print total elapsed time after all segments.
+ */
+async function semicolons_handle(line, startTime, timingEnabled) {
+    const commands = semicolons_parse(line);
+    if (commands.length <= 1) {
+        return Ok(false);
+    }
+    for (const cmd of commands) {
+        try {
+            await command_handle(cmd);
+        }
+        catch (error) {
+            const msg = error instanceof Error ? error.message : String(error);
+            console.error(chalk.red(`Command error: ${msg}`));
+            if (stopOnError) {
+                return Err();
+            }
+        }
+    }
+    if (timingEnabled) {
+        const elapsed = performance.now() - startTime;
+        console.log(chalk.gray(`[Total: ${elapsed.toFixed(2)}ms]`));
+    }
+    return Ok(true);
+}
+/**
+ * Handles output redirection (`>` / `>>`). Captures command output and writes to the target file.
+ * Returns Ok(true) if redirection was detected and handled, Ok(false) if not.
+ *
+ * @param line - Full input line.
+ * @param startTime - Timing reference.
+ * @param timingEnabled - Whether to print elapsed time after execution.
+ */
+async function redirect_handle(line, startTime, timingEnabled) {
+    const redirectInfo = redirect_parse(line);
+    if (!redirectInfo) {
+        return Ok(false);
+    }
+    const { buffer } = await chellCommand_executeAndCapture(redirectInfo.command);
+    const targetResult = redirectTarget_resolve(redirectInfo.filePath, redirectInfo.command);
+    if (!targetResult.ok) {
+        const lastError = errorStack.stack_pop();
+        console.error(chalk.red(lastError ? lastError.message : 'Redirect error'));
+        return Err();
+    }
+    if (redirectInfo.operator === '>') {
+        writeFileSync(targetResult.value, buffer);
+    }
+    else {
+        appendFileSync(targetResult.value, buffer);
+    }
+    command_timingMaybePrint(startTime, timingEnabled);
+    return Ok(true);
+}
+/**
+ * Handles pipe chains (`cmd1 | cmd2 | ...`). Executes the first segment in chell and
+ * pipes the output through subsequent host-shell processes.
+ * Returns Ok(true) if a pipe was detected and handled, Ok(false) if not.
+ *
+ * @param line - Full input line.
+ * @param startTime - Timing reference.
+ * @param timingEnabled - Whether to print elapsed time after the chain completes.
+ */
+async function pipe_handle(line, startTime, timingEnabled) {
+    const segments = pipes_parse(line);
+    if (segments.length <= 1) {
+        return Ok(false);
+    }
+    try {
+        await pipe_execute(segments);
+    }
+    catch (error) {
+        const msg = error instanceof Error ? error.message : String(error);
+        console.error(chalk.red(`Pipe error: ${msg}`));
+        return Err();
+    }
+    command_timingMaybePrint(startTime, timingEnabled);
+    return Ok(true);
+}
+/**
+ * Shows help for a command if `--help` or `-h` is present in args.
+ * Returns Ok(true) if help was displayed, Ok(false) otherwise.
+ *
+ * @param command - The command name (used to look up help text).
+ * @param args - Parsed argument list.
+ */
+function help_showMaybe(command, args) {
+    if (args_checkHasHelpFlag(args, command)) {
+        help_show(command);
+        return Ok(true);
+    }
+    return Ok(false);
+}
+/**
+ * Expands wildcard patterns in args for commands that support it.
+ * Returns Ok(expanded args) or Err if expansion fails.
+ *
+ * @param command - The command name (determines whether expansion applies).
+ * @param args - Raw argument list potentially containing glob patterns.
+ */
+async function wildcards_expand(command, args) {
+    if (!wildcards_expandCheck(command)) {
+        return Ok(args);
+    }
+    const expandResult = await wildcards_expandAll(args);
+    if (!expandResult.ok) {
+        const lastError = errorStack.stack_pop();
+        if (lastError) {
+            console.error(chalk.red(error_stripDebugPrefix(lastError.message)));
+        }
+        return Err();
+    }
+    return Ok(expandResult.value);
+}
+/**
+ * Executes a chell command and captures its output.
+ * Consults COMMAND_HANDLERS — the single source of truth — so the pipe path
+ * is always consistent with the direct-execution path.
+ *
+ * @param commandLine - The command line to execute.
+ * @returns The captured output as text and raw buffer.
+ */
+async function chellCommand_executeAndCapture(commandLine) {
+    const trimmedLine = commandLine.trim();
+    if (!trimmedLine)
+        return { text: '', buffer: Buffer.alloc(0) };
+    const tokens = args_tokenize(trimmedLine);
+    if (tokens.length === 0) {
+        return { text: '', buffer: Buffer.alloc(0) };
+    }
+    let [command, ...args] = tokens;
+    if (wildcards_expandCheck(command)) {
+        const expandResult = await wildcards_expandAll(args);
+        if (!expandResult.ok) {
+            const lastError = errorStack.stack_pop();
+            const errorMsg = lastError ? error_stripDebugPrefix(lastError.message) : 'Unknown error';
+            return { text: chalk.red(`${errorMsg}\n`), buffer: Buffer.from('') };
+        }
+        args = expandResult.value;
+    }
+    return output_capture(async () => {
+        if (command === 'exit') {
+            process.exit(0);
+        }
+        if (await pluginExecutable_handle(command, args, { piped: true })) {
+            return;
+        }
+        const handler = COMMAND_HANDLERS[command];
+        if (handler) {
+            await handler(args);
+            return;
+        }
+        console.log(chalk.yellow(`Unknown chell command '${command}' -- delegating to chili`));
+        await chiliCommand_run(command, ['-s', ...args]);
+    });
+}
+/**
+ * Executes a pipe chain by running the first command in chell and piping through local tools.
+ *
+ * @param segments - Array of command segments separated by pipes.
+ * @returns A Promise that resolves when the pipe chain completes.
+ */
+async function pipe_execute(segments) {
+    if (segments.length === 0)
+        return;
+    // Execute first segment in chell and capture output
+    const firstCommand = segments[0];
+    const { buffer } = await chellCommand_executeAndCapture(firstCommand);
+    if (segments.length === 1) {
+        // No pipes, just output the result
+        process.stdout.write(buffer);
+        return;
+    }
+    // Chain remaining segments as spawned processes
+    let currentInput = buffer;
+    for (let i = 1; i < segments.length; i++) {
+        currentInput = await segment_pipeThrough(segments[i], currentInput);
+    }
+    // Output final result
+    process.stdout.write(currentInput);
+}
+/**
+ * Whether a batch (semicolon list, script) should abort on the first error.
+ * Read by {@link semicolons_handle}; set by the boot layer for `-e` / script modes.
+ */
+let stopOnError = false;
+/**
+ * Sets the shared stop-on-error flag. Exposed so the boot layer (which owns the
+ * `-e` flag and script execution) can drive the flag that the dispatch layer reads.
+ *
+ * @param value - `true` to abort a batch on the first error.
+ */
+export function stopOnError_set(value) {
+    stopOnError = value;
+}
+//# sourceMappingURL=dispatch.js.map

package/dist/core/dispatch.js.map

@@ -0,0 +1 @@
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package/dist/core/preprocess.d.ts

@@ -0,0 +1,46 @@
+import { Result } from '@fnndsc/cumin';
+/**
+ * Determines if a command should have its arguments expanded for wildcards.
+ *
+ * @param command - The command name.
+ * @returns True if wildcards should be expanded.
+ */
+export declare function wildcards_expandCheck(command: string): boolean;
+/**
+ * Returns true if the input line is a shell escape (starts with `!`).
+ *
+ * @param line - Trimmed input line.
+ */
+export declare function command_shellEscape_detect(line: string): boolean;
+/**
+ * Parses a command line for pipe operators and returns segments.
+ * Respects single and double quotes.
+ *
+ * @param line - The full command line.
+ * @returns An array of command segments.
+ */
+export declare function pipes_parse(line: string): string[];
+/** Parsed output-redirection: command plus target file and append/overwrite. */
+export interface RedirectInfo {
+    command: string;
+    operator: '>' | '>>';
+    filePath: string;
+}
+/**
+ * Parses a command line for output redirection operators (> or >>).
+ * Respects single and double quotes.
+ *
+ * @param line - The full command line.
+ * @returns An object with the command and redirect info, or null if no redirection.
+ */
+export declare function redirect_parse(line: string): RedirectInfo | null;
+/**
+ * Resolves the final redirect target path. If the target is an existing directory
+ * and the source command is `cat <file>`, resolves to `<dir>/<basename>`.
+ * Returns Err (with message on errorStack) when the filename cannot be determined.
+ *
+ * @param filePath - The redirect target path as written by the user.
+ * @param commandLine - The command whose output is being redirected.
+ * @returns Ok(resolved path) or Err on failure.
+ */
+export declare function redirectTarget_resolve(filePath: string, commandLine: string): Result<string>;