npm - @fnndsc/chell - Versions diffs - 4.2.8 → 4.3.1 - Mend

@fnndsc/chell 4.2.8 → 4.3.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (23) hide show

package/dist/builtins/fs/pull.d.ts +2 -2
package/dist/builtins/fs/pull.js +10 -6
package/dist/builtins/fs/pull.js.map +1 -1
package/dist/builtins/help.js +12 -12
package/dist/builtins/net/query.js +26 -6
package/dist/builtins/net/query.js.map +1 -1
package/dist/chell.d.ts +6 -12
package/dist/chell.js +5 -1187
package/dist/chell.js.map +1 -1
package/dist/core/boot.d.ts +7 -0
package/dist/core/boot.js +601 -0
package/dist/core/boot.js.map +1 -0
package/dist/core/dispatch.d.ts +48 -0
package/dist/core/dispatch.js +544 -0
package/dist/core/dispatch.js.map +1 -0
package/dist/core/preprocess.d.ts +46 -0
package/dist/core/preprocess.js +146 -0
package/dist/core/preprocess.js.map +1 -0
package/dist/index.js +1 -1
package/dist/index.js.map +1 -1
package/dist/lib/spinner.js +4 -2
package/dist/lib/spinner.js.map +1 -1
package/package.json +10 -6

package/dist/builtins/fs/pull.d.ts CHANGED Viewed

@@ -20,7 +20,7 @@
  *
  * @param args - Command arguments (VFS paths, optional flags).
  * @example
- * pull /net/pacs/queries/42_AccessionNumber:22548684
- * pull --retry 3 /net/pacs/queries/42_AccessionNumber:22548684/Study_1.2.3_US-Hips
+ * pull /net/pacs/queries/42_AccessionNumber:12345678
+ * pull --retry 3 /net/pacs/queries/42_AccessionNumber:12345678/Study_1.2.3_US-Hips
  */
 export declare function builtin_pull(args: string[]): Promise<void>;

package/dist/builtins/fs/pull.js CHANGED Viewed

@@ -60,7 +60,9 @@ async function path_seriesCollect(pathStr, fallbackPacsName) {
  */
 async function task_fire(task, pacsserver) {
     const queryData = {
-        title: `pull_${task.seriesUID}`,
+        // CUBE rejects duplicate query titles per user, which used to make a
+        // re-pull of the same series fail; a timestamp keeps titles unique.
+        title: `pull_${task.seriesUID}_${Date.now().toString(36)}`,
         query: JSON.stringify({
             SeriesInstanceUID: task.seriesUID,
             StudyInstanceUID: task.studyUID,
@@ -252,15 +254,17 @@ async function paths_resolveToVfs(paths, pacsserver) {
             resolvedPaths.push(p);
         }
         else if (queryExpr_parse(rawPath)) {
-            spinner.start(`Querying PACS for ${p}...`, true);
-            const qResult = await pacsQuery_createAndWait(p, `pull_${p}`, pacsserver, (msg) => spinner.updateMessage(msg));
+            // Query with the RAW expression: path resolution prefixes the CWD,
+            // which would corrupt the first DICOM key (e.g. '/AccessionNumber').
+            spinner.start(`Querying PACS for ${rawPath}...`, true);
+            const qResult = await pacsQuery_createAndWait(rawPath, `pull_${rawPath}`, pacsserver, (msg) => spinner.updateMessage(msg));
             spinner.stop();
             if (qResult) {
                 console.log(chalk.gray(`  → ${qResult.vfsPath}`));
                 resolvedPaths.push(qResult.vfsPath);
             }
             else {
-                console.error(chalk.red(`pull: Query failed for: ${p}`));
+                console.error(chalk.red(`pull: Query failed for: ${rawPath}`));
             }
         }
         else {
@@ -348,8 +352,8 @@ function pullSummary_print(allTasks, totalFiringErrors) {
  *
  * @param args - Command arguments (VFS paths, optional flags).
  * @example
- * pull /net/pacs/queries/42_AccessionNumber:22548684
- * pull --retry 3 /net/pacs/queries/42_AccessionNumber:22548684/Study_1.2.3_US-Hips
+ * pull /net/pacs/queries/42_AccessionNumber:12345678
+ * pull --retry 3 /net/pacs/queries/42_AccessionNumber:12345678/Study_1.2.3_US-Hips
  */
 export async function builtin_pull(args) {
     if (args_checkHasHelpFlag(args, 'pull')) {

package/dist/builtins/fs/pull.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/builtins/help.js CHANGED Viewed

@@ -471,7 +471,7 @@ export const helpText = {
             'pacs disconnect                   # Clear active server',
             'pacs list                         # List all servers',
             'pacs query PatientID:1234         # Query PACS',
-            'pacs pull /net/pacs/queries/42_AccessionNumber:22548684',
+            'pacs pull /net/pacs/queries/42_AccessionNumber:12345678',
         ],
     },
     'pacs query': {
@@ -485,7 +485,7 @@ export const helpText = {
         ],
         examples: [
             'pacs query PatientID:1234',
-            'pacs query AccessionNumber:22548684 --title "Hip DDH workup"',
+            'pacs query AccessionNumber:12345678 --title "Hip DDH workup"',
             'pacs query PatientID:1234,StudyDate:20240101',
             '',
             '# Standalone alias (identical behaviour)',
@@ -501,12 +501,12 @@ export const helpText = {
             '--help        Show this help',
         ],
         examples: [
-            'pacs pull /net/pacs/queries/42_AccessionNumber:22548684',
+            'pacs pull /net/pacs/queries/42_AccessionNumber:12345678',
             'pacs pull /net/pacs/queries/42_.../Study_1.2.3_US-Hips_DDH',
-            'pacs pull AccessionNumber:22548684   # query-then-pull shorthand',
+            'pacs pull AccessionNumber:12345678   # query-then-pull shorthand',
             '',
             '# Standalone alias (identical behaviour)',
-            'pull /net/pacs/queries/42_AccessionNumber:22548684',
+            'pull /net/pacs/queries/42_AccessionNumber:12345678',
         ],
     },
     'pacs connect': {
@@ -951,7 +951,7 @@ export const helpText = {
         ],
         examples: [
             'query PatientID:1234',
-            'query AccessionNumber:22548684 --title "Hip DDH workup"',
+            'query AccessionNumber:12345678 --title "Hip DDH workup"',
             'query PatientID:1234,StudyDate:20240101',
             '',
             '# Use output path directly with pull',
@@ -968,23 +968,23 @@ export const helpText = {
         ],
         examples: [
             '# Pull all series in a query (blocking)',
-            'pull /net/pacs/queries/42_AccessionNumber:22548684',
+            'pull /net/pacs/queries/42_AccessionNumber:12345678',
             '',
             '# Pull a single study',
-            'pull /net/pacs/queries/42_AccessionNumber:22548684/Study_1.2.3_US-Hips_DDH',
+            'pull /net/pacs/queries/42_AccessionNumber:12345678/Study_1.2.3_US-Hips_DDH',
             '',
             '# Pull a specific series',
-            'pull /net/pacs/queries/42_AccessionNumber:22548684/Study_1.2.3_US-Hips_DDH/Series_1.2.3.4_XR',
+            'pull /net/pacs/queries/42_AccessionNumber:12345678/Study_1.2.3_US-Hips_DDH/Series_1.2.3.4_XR',
             '',
             '# Pull multiple paths in one blocking call',
-            'pull /net/pacs/queries/42_AccessionNumber:22548684 /net/pacs/queries/43_PatientID:P001',
+            'pull /net/pacs/queries/42_AccessionNumber:12345678 /net/pacs/queries/43_PatientID:P001',
             '',
             '# Pull directly from a query expression (creates query, waits, then pulls)',
             'pull PatientID:1234',
-            'pull AccessionNumber:22548684',
+            'pull AccessionNumber:12345678',
             '',
             '# Fire-and-forget (scripted)',
-            'pull --nowait /net/pacs/queries/42_AccessionNumber:22548684',
+            'pull --nowait /net/pacs/queries/42_AccessionNumber:12345678',
             '# Output: <seriesUID> <retrieveId>  (one per series, in tree-walk order)',
         ],
     },

package/dist/builtins/net/query.js CHANGED Viewed

@@ -92,6 +92,7 @@ export async function pacsQuery_createAndWait(queryExpr, title, pacsserver, onSt
     const vfsPath = queryVfsPath_build(queryId, queryObj, ownerUsername);
     const deadline = Date.now() + QUERY_TIMEOUT_MS;
     const sleep = (ms) => new Promise(r => setTimeout(r, ms));
+    let succeededWithoutPayload = 0;
     while (Date.now() < deadline) {
         const statusResult = await pacsQuery_get(queryId);
         const status = statusResult.ok ? (statusResult.value.status ?? 'pending') : 'pending';
@@ -100,6 +101,17 @@ export async function pacsQuery_createAndWait(queryExpr, title, pacsserver, onSt
         if (decodeResult.ok && decodeResult.value.json !== undefined) {
             return { queryId, vfsPath, decoded: decodeResult.value };
         }
+        if (!decodeResult.ok) {
+            // A missing payload is the expected state while polling; drop the
+            // error the probe pushed so the stack doesn't fill with one copy
+            // per poll tick.
+            errorStack.stack_pop();
+        }
+        // A succeeded query with no stored payload means the PACS matched
+        // nothing; a couple of grace polls cover result-write lag.
+        if (status === 'succeeded' && ++succeededWithoutPayload >= 2) {
+            return { queryId, vfsPath, decoded: { raw: '' } };
+        }
         await sleep(QUERY_POLL_INTERVAL_MS);
     }
     errorStack.stack_push('error', `query: Timed out waiting for query ${queryId} result.`);
@@ -281,7 +293,14 @@ export async function builtin_query(args) {
     spinner.stop();
     if (!result) {
         const errs = errorStack.stack_getAll?.() ?? [];
-        if (!errs.length) {
+        if (errs.length) {
+            // Print the stack directly: in -c/-f mode nothing else will.
+            errs.forEach((err) => {
+                const msg = typeof err === 'string' ? err : (err.message ?? String(err));
+                console.error(chalk.red(msg));
+            });
+        }
+        else {
             console.error(chalk.red('query: Failed — check connection and PACS server context.'));
         }
         process.exitCode = 1;
@@ -290,13 +309,14 @@ export async function builtin_query(args) {
     const rendered = tableMode
         ? queryResult_renderTable(result.decoded, title !== `Query ${Date.now()}` ? title : undefined)
         : queryResult_render(result.decoded);
-    if (rendered) {
-        console.log(chalk.green(`✓ Query ${result.queryId} complete`));
-        console.log(rendered);
-    }
-    else {
+    if (!rendered) {
+        // Nothing matched: browsing or pulling the empty query would be
+        // meaningless, so no hints.
         console.log(chalk.yellow(`⚠ Query ${result.queryId} complete — no studies found.`));
+        return;
     }
+    console.log(chalk.green(`✓ Query ${result.queryId} complete`));
+    console.log(rendered);
     console.log(chalk.bold(`  VFS path: ${chalk.cyan(result.vfsPath)}`));
     console.log(chalk.gray(`  cd ${result.vfsPath}`));
     console.log(chalk.gray(`  pull ${result.vfsPath}`));

package/dist/builtins/net/query.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/chell.d.ts CHANGED Viewed

@@ -1,16 +1,10 @@
 /**
- * Spawns the `chili` CLI as a child process.
+ * @file ChELL public module surface.
  *
- * @param command - The command to run (e.g., "feeds").
- * @param args - The arguments to pass to the command.
- * @returns A Promise resolving when the child process exits.
- */
-export declare function chiliCommand_run(command: string, args: string[]): Promise<void>;
-export { COMMAND_HANDLERS_KEYS } from './command-keys.js';
-/**
- * Starts the ChELL REPL.
- * Initializes connection and enters the command loop.
+ * Historically the shell's god file; the implementation now lives in the
+ * `core/` modules. This barrel re-exports the command layer so existing
+ * importers (`./builtins/res/*`, `./core/boot.js`) keep a stable path.
  *
- * @returns A Promise that resolves when the shell exits.
+ * @module
  */
-export declare function chell_start(): Promise<void>;
+export { chiliCommand_run, command_handle, command_dispatch, COMMAND_HANDLERS, COMMAND_HANDLERS_KEYS, stopOnError_set, } from './core/dispatch.js';