@fideus-labs/ngff-zarr 0.8.0 → 0.9.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/browser-mod.d.ts +2 -2
- package/esm/browser-mod.d.ts.map +1 -1
- package/esm/browser-mod.js +2 -2
- package/esm/browser-mod.js.map +1 -1
- package/esm/mod.d.ts +1 -1
- package/esm/mod.d.ts.map +1 -1
- package/esm/mod.js +1 -1
- package/esm/mod.js.map +1 -1
- package/esm/utils/compute_omero-shared.d.ts +12 -0
- package/esm/utils/compute_omero-shared.d.ts.map +1 -1
- package/esm/utils/compute_omero-shared.js +28 -0
- package/esm/utils/compute_omero-shared.js.map +1 -1
- package/esm/utils/compute_omero.d.ts +10 -38
- package/esm/utils/compute_omero.d.ts.map +1 -1
- package/esm/utils/compute_omero.js +332 -79
- package/esm/utils/compute_omero.js.map +1 -1
- package/esm/utils/omero_worker_rpc.d.ts +37 -0
- package/esm/utils/omero_worker_rpc.d.ts.map +1 -0
- package/esm/utils/omero_worker_rpc.js +156 -0
- package/esm/utils/omero_worker_rpc.js.map +1 -0
- package/esm/workers/omero_codec_worker.d.ts +2 -0
- package/esm/workers/omero_codec_worker.d.ts.map +1 -0
- package/esm/workers/omero_codec_worker.js +215 -0
- package/esm/workers/omero_codec_worker.js.map +1 -0
- package/package.json +2 -3
- package/esm/utils/compute_omero-browser.d.ts +0 -45
- package/esm/utils/compute_omero-browser.d.ts.map +0 -1
- package/esm/utils/compute_omero-browser.js +0 -250
- package/esm/utils/compute_omero-browser.js.map +0 -1
- package/esm/workers/compute_omero_worker.d.ts +0 -47
- package/esm/workers/compute_omero_worker.d.ts.map +0 -1
- package/esm/workers/compute_omero_worker.js +0 -113
- package/esm/workers/compute_omero_worker.js.map +0 -1
package/esm/browser-mod.d.ts
CHANGED
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@@ -12,8 +12,8 @@ export * from "./schemas/multiscales.js";
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export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/validation.js";
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export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, } from "./utils/factory.js";
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export { getMethodMetadata } from "./utils/method_metadata.js";
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export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS,
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export type { ComputeOmeroFromMultiscalesOptions, ComputeOmeroOptions, } from "./utils/compute_omero
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export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
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export type { ComputeOmeroFromMultiscalesOptions, ComputeOmeroOptions, } from "./utils/compute_omero.js";
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export { buildOmeroFromAccumulators, computeChannelStatistics, createAccumulator, extractChannel, finalizeStatistics, QUANTILE_SAMPLE_SIZE, updateAccumulator, validateQuantiles, } from "./utils/compute_omero-shared.js";
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export type { ChannelStatisticsAccumulator } from "./utils/compute_omero-shared.js";
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export { terminateWorkerPool, zarrGet, zarrSet } from "./utils/worker_pool.js";
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package/esm/browser-mod.d.ts.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"file":"browser-mod.d.ts","sourceRoot":"","sources":["../src/browser-mod.ts"],"names":[],"mappings":"AAOA,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AAEvC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAE/D,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,
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{"version":3,"file":"browser-mod.d.ts","sourceRoot":"","sources":["../src/browser-mod.ts"],"names":[],"mappings":"AAOA,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AAEvC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAE/D,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAGlC,OAAO,EACL,0BAA0B,EAC1B,wBAAwB,EACxB,iBAAiB,EACjB,cAAc,EACd,kBAAkB,EAClB,oBAAoB,EACpB,iBAAiB,EACjB,iBAAiB,GAClB,MAAM,iCAAiC,CAAC;AACzC,YAAY,EAAE,4BAA4B,EAAE,MAAM,iCAAiC,CAAC;AACpF,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAK/E,OAAO,EACL,KAAK,UAAU,EACf,YAAY,EACZ,KAAK,mBAAmB,EACxB,KAAK,WAAW,GACjB,MAAM,gCAAgC,CAAC;AACxC,OAAO,EACL,SAAS,EACT,UAAU,EACV,KAAK,iBAAiB,EACtB,aAAa,EACb,KAAK,oBAAoB,GAC1B,MAAM,8BAA8B,CAAC;AAGtC,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,gBAAgB,EAChB,iBAAiB,EACjB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC;AAGhE,cAAc,qCAAqC,CAAC;AAGpD,OAAO,EACL,mBAAmB,EACnB,KAAK,0BAA0B,GAChC,MAAM,iCAAiC,CAAC"}
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package/esm/browser-mod.js
CHANGED
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@@ -19,8 +19,8 @@ export * from "./schemas/multiscales.js";
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export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/validation.js";
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export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, } from "./utils/factory.js";
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export { getMethodMetadata } from "./utils/method_metadata.js";
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//
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export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS,
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// OMERO computation with WorkerPool
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export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
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// Shared OMERO computation functions for benchmarking and direct use
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export { buildOmeroFromAccumulators, computeChannelStatistics, createAccumulator, extractChannel, finalizeStatistics, QUANTILE_SAMPLE_SIZE, updateAccumulator, validateQuantiles, } from "./utils/compute_omero-shared.js";
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export { terminateWorkerPool, zarrGet, zarrSet } from "./utils/worker_pool.js";
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package/esm/browser-mod.js.map
CHANGED
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@@ -1 +1 @@
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{"version":3,"file":"browser-mod.js","sourceRoot":"","sources":["../src/browser-mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,oCAAoC;AACpC,wEAAwE;AACxE,EAAE;AACF,kFAAkF;AAClF,yEAAyE;AACzE,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AAEvC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,
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{"version":3,"file":"browser-mod.js","sourceRoot":"","sources":["../src/browser-mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,oCAAoC;AACpC,wEAAwE;AACxE,EAAE;AACF,kFAAkF;AAClF,yEAAyE;AACzE,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AAEvC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,oCAAoC;AACpC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAMlC,qEAAqE;AACrE,OAAO,EACL,0BAA0B,EAC1B,wBAAwB,EACxB,iBAAiB,EACjB,cAAc,EACd,kBAAkB,EAClB,oBAAoB,EACpB,iBAAiB,EACjB,iBAAiB,GAClB,MAAM,iCAAiC,CAAC;AAEzC,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAE/E,iCAAiC;AACjC,0EAA0E;AAC1E,iFAAiF;AACjF,OAAO,EAEL,YAAY,GAGb,MAAM,gCAAgC,CAAC;AACxC,OAAO,EACL,SAAS,EACT,UAAU,EAEV,aAAa,GAEd,MAAM,8BAA8B,CAAC;AAEtC,gBAAgB;AAChB,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,gBAAgB,EAChB,iBAAiB,EACjB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAG1B,wCAAwC;AACxC,cAAc,qCAAqC,CAAC;AAEpD,gCAAgC;AAChC,OAAO,EACL,mBAAmB,GAEpB,MAAM,iCAAiC,CAAC"}
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package/esm/mod.d.ts
CHANGED
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@@ -16,7 +16,7 @@ export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/valida
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export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, } from "./utils/factory.js";
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export { getMethodMetadata } from "./utils/method_metadata.js";
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export { detectVersion, extractMethodMetadata, parseOmero, } from "./utils/parse_metadata.js";
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export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, } from "./utils/compute_omero.js";
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export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
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export type { ComputeOmeroFromMultiscalesOptions, ComputeOmeroOptions, } from "./utils/compute_omero.js";
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export { fromZarrAttrsV04, fromZarrAttrsV05 } from "./utils/from_zarr_attrs.js";
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export { terminateWorkerPool, zarrGet, zarrSet } from "./utils/worker_pool.js";
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package/esm/mod.d.ts.map
CHANGED
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{"version":3,"file":"mod.d.ts","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAEA,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AACvC,cAAc,iBAAiB,CAAC;AAChC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,+BAA+B,CAAC;AAE9C,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,
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{"version":3,"file":"mod.d.ts","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAEA,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AACvC,cAAc,iBAAiB,CAAC;AAChC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,+BAA+B,CAAC;AAE9C,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,4BAA4B,CAAC;AAChF,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAE/E,cAAc,wBAAwB,CAAC;AACvC,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,YAAY,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAC1D,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAChD,cAAc,aAAa,CAAC;AAG5B,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC"}
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package/esm/mod.js
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@@ -18,7 +18,7 @@ export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/valida
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export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, } from "./utils/factory.js";
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export { getMethodMetadata } from "./utils/method_metadata.js";
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export { detectVersion, extractMethodMetadata, parseOmero, } from "./utils/parse_metadata.js";
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export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, } from "./utils/compute_omero.js";
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export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
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export { fromZarrAttrsV04, fromZarrAttrsV05 } from "./utils/from_zarr_attrs.js";
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export { terminateWorkerPool, zarrGet, zarrSet } from "./utils/worker_pool.js";
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export * from "./io/from_ngff_zarr.js";
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package/esm/mod.js.map
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{"version":3,"file":"mod.js","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AACvC,cAAc,iBAAiB,CAAC;AAChC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,+BAA+B,CAAC;AAE9C,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,
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{"version":3,"file":"mod.js","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AACvC,cAAc,iBAAiB,CAAC;AAChC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,+BAA+B,CAAC;AAE9C,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAKlC,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,4BAA4B,CAAC;AAChF,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAE/E,cAAc,wBAAwB,CAAC;AACvC,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AAEjD,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAChD,cAAc,aAAa,CAAC;AAE5B,gBAAgB;AAChB,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC"}
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@@ -63,6 +63,11 @@ export declare function finalizeStatistics(acc: ChannelStatisticsAccumulator, qu
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qLow: number;
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qHigh: number;
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};
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/**
|
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* Merge two channel statistics accumulators.
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* Used to combine partial results from parallel per-chunk workers.
|
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*/
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export declare function mergeAccumulators(a: ChannelStatisticsAccumulator, b: ChannelStatisticsAccumulator): ChannelStatisticsAccumulator;
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/**
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* Compute channel statistics from array data (non-streaming version).
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* For datasets larger than QUANTILE_SAMPLE_SIZE, uses reservoir sampling.
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@@ -87,6 +92,13 @@ export interface ComputeOmeroOptions {
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colors?: string[] | undefined;
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/** Optional list of label strings for each channel. */
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labels?: string[] | undefined;
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/**
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* Optional decoded-chunk cache. When provided, decoded chunks are cached
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* during omero computation so that subsequent zarrGet() calls with the
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* same cache get cache hits (no re-decode). Any object with get(key)
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* and set(key, value) works — a plain Map is the simplest option.
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*/
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cache?: import("@fideus-labs/fizarrita").ChunkCache | undefined;
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}
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/**
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* Options for computing OMERO metadata from multiscales.
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"compute_omero-shared.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero-shared.ts"],"names":[],"mappings":"AAGA;;;;GAIG;AAEH,OAAO,KAAK,EACV,KAAK,EAGN,MAAM,2BAA2B,CAAC;AAEnC;;;;;GAKG;AACH,eAAO,MAAM,cAAc,EAAE,SAAS,MAAM,EAiQlC,CAAC;AAEX;;;GAGG;AACH,eAAO,MAAM,oBAAoB,QAAS,CAAC;AAE3C;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,EAAE,CAS5D;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAanE;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAOjD;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,YAAY,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,CAkBzE;AAED;;;GAGG;AACH,MAAM,WAAW,4BAA4B;IAC3C,GAAG,EAAE,MAAM,CAAC;IACZ,GAAG,EAAE,MAAM,CAAC;IACZ,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,wBAAgB,iBAAiB,IAAI,4BAA4B,CAOhE;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,GAAG,EAAE,4BAA4B,EACjC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,GACvB,IAAI,CAwBN;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAChC,GAAG,EAAE,4BAA4B,EACjC,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAC1B;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAY3D;AAED;;;GAGG;AACH,wBAAgB,wBAAwB,CACtC,IAAI,EAAE,SAAS,CAAC,MAAM,CAAC,EACvB,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAC1B;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAI3D;AAED;;GAEG;AACH,wBAAgB,cAAc,CAC5B,IAAI,EAAE,SAAS,CAAC,MAAM,CAAC,EACvB,KAAK,EAAE,SAAS,MAAM,EAAE,EACxB,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,MAAM,EAAE,CA8BV;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,4FAA4F;IAC5F,SAAS,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC7B,uEAAuE;IACvE,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B,uDAAuD;IACvD,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;
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1
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+
{"version":3,"file":"compute_omero-shared.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero-shared.ts"],"names":[],"mappings":"AAGA;;;;GAIG;AAEH,OAAO,KAAK,EACV,KAAK,EAGN,MAAM,2BAA2B,CAAC;AAEnC;;;;;GAKG;AACH,eAAO,MAAM,cAAc,EAAE,SAAS,MAAM,EAiQlC,CAAC;AAEX;;;GAGG;AACH,eAAO,MAAM,oBAAoB,QAAS,CAAC;AAE3C;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,EAAE,CAS5D;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAanE;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAOjD;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,YAAY,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,CAkBzE;AAED;;;GAGG;AACH,MAAM,WAAW,4BAA4B;IAC3C,GAAG,EAAE,MAAM,CAAC;IACZ,GAAG,EAAE,MAAM,CAAC;IACZ,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,wBAAgB,iBAAiB,IAAI,4BAA4B,CAOhE;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,GAAG,EAAE,4BAA4B,EACjC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,GACvB,IAAI,CAwBN;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAChC,GAAG,EAAE,4BAA4B,EACjC,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAC1B;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAY3D;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,CAAC,EAAE,4BAA4B,EAC/B,CAAC,EAAE,4BAA4B,GAC9B,4BAA4B,CA0B9B;AAED;;;GAGG;AACH,wBAAgB,wBAAwB,CACtC,IAAI,EAAE,SAAS,CAAC,MAAM,CAAC,EACvB,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAC1B;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAI3D;AAED;;GAEG;AACH,wBAAgB,cAAc,CAC5B,IAAI,EAAE,SAAS,CAAC,MAAM,CAAC,EACvB,KAAK,EAAE,SAAS,MAAM,EAAE,EACxB,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,MAAM,EAAE,CA8BV;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,4FAA4F;IAC5F,SAAS,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC7B,uEAAuE;IACvE,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B,uDAAuD;IACvD,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B;;;;;OAKG;IACH,KAAK,CAAC,EAAE,OAAO,wBAAwB,EAAE,UAAU,GAAG,SAAS,CAAC;CACjE;AAED;;GAEG;AACH,MAAM,WAAW,kCACf,SAAQ,mBAAmB;CAAG;AAEhC;;GAEG;AACH,wBAAgB,0BAA0B,CACxC,YAAY,EAAE,4BAA4B,EAAE,EAC5C,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,EAC3B,MAAM,CAAC,EAAE,MAAM,EAAE,EACjB,MAAM,CAAC,EAAE,MAAM,EAAE,GAChB,KAAK,CAkDP;AAED;;GAEG;AACH,MAAM,WAAW,uBAAuB;IACtC,KAAK,EAAE,SAAS,MAAM,EAAE,CAAC;IACzB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC5B,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;CAC/B;AAED;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,SAAS,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;CAC9B"}
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@@ -378,6 +378,34 @@ export function finalizeStatistics(acc, quantiles) {
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378
|
const qHigh = computeQuantile(acc.sample, quantiles[1]);
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379
|
return { min: acc.min, max: acc.max, qLow, qHigh };
|
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|
}
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381
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+
/**
|
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382
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+
* Merge two channel statistics accumulators.
|
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383
|
+
* Used to combine partial results from parallel per-chunk workers.
|
|
384
|
+
*/
|
|
385
|
+
export function mergeAccumulators(a, b) {
|
|
386
|
+
const merged = {
|
|
387
|
+
min: Math.min(a.min, b.min),
|
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388
|
+
max: Math.max(a.max, b.max),
|
|
389
|
+
count: a.count + b.count,
|
|
390
|
+
sample: [...a.sample, ...b.sample],
|
|
391
|
+
};
|
|
392
|
+
// Downsample if combined reservoir exceeds limit
|
|
393
|
+
if (merged.sample.length > QUANTILE_SAMPLE_SIZE) {
|
|
394
|
+
// Use reservoir sampling over the concatenated sample for unbiased downsampling
|
|
395
|
+
const k = QUANTILE_SAMPLE_SIZE;
|
|
396
|
+
const n = merged.sample.length;
|
|
397
|
+
// Treat the first k elements as the initial reservoir and
|
|
398
|
+
// stream the remaining elements, applying the reservoir update rule.
|
|
399
|
+
for (let i = k; i < n; i++) {
|
|
400
|
+
const j = Math.floor(Math.random() * (i + 1));
|
|
401
|
+
if (j < k) {
|
|
402
|
+
merged.sample[j] = merged.sample[i];
|
|
403
|
+
}
|
|
404
|
+
}
|
|
405
|
+
merged.sample.length = k;
|
|
406
|
+
}
|
|
407
|
+
return merged;
|
|
408
|
+
}
|
|
381
409
|
/**
|
|
382
410
|
* Compute channel statistics from array data (non-streaming version).
|
|
383
411
|
* For datasets larger than QUANTILE_SAMPLE_SIZE, uses reservoir sampling.
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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@@ -1,51 +1,23 @@
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/**
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* Compute OMERO metadata from NgffImage data.
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*
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* This is the main-thread (Node.js/Deno) implementation.
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* For browser environments with WebWorker support, see compute_omero-browser.ts.
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*/
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import type { NgffImage } from "../types/ngff_image.js";
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import type { Multiscales } from "../types/multiscales.js";
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import type { Omero } from "../types/zarr_metadata.js";
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export { computeChannelStatistics, type ComputeOmeroFromMultiscalesOptions, type ComputeOmeroOptions, extractChannel, getDefaultColors, GLASBEY_COLORS, QUANTILE_SAMPLE_SIZE, validateColor, validateQuantiles, } from "./compute_omero-shared.js";
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import { type ComputeOmeroFromMultiscalesOptions, type ComputeOmeroOptions } from "./compute_omero-shared.js";
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export { computeChannelStatistics, type ComputeOmeroFromMultiscalesOptions, type ComputeOmeroOptions, extractChannel, getDefaultColors, GLASBEY_COLORS, QUANTILE_SAMPLE_SIZE, validateColor, validateQuantiles, } from "./compute_omero-shared.js";
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/**
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* Terminate the omero computation worker pool and release resources.
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* Call this when you're done with OMERO computations to free memory.
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*/
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export declare function terminateOmeroWorkerPool(): void;
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/**
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12
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* Compute OMERO metadata from an NgffImage.
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*
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*
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*
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*
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*
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* For multi-channel images (with 'c' dimension), statistics are computed
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* separately for each channel, resulting in per-channel OMERO windows.
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*
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* Memory requirements: This function loads the entire image data into memory
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23
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* for statistics computation. For large images, use the lowest resolution
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* image from a multiscales pyramid.
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*
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* Edge cases:
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* - If all values in a channel are NaN, the statistics will be NaN.
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* - If a channel has constant values, min/max/start/end will all be the same.
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14
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+
* Each zarr chunk is decoded and its per-channel statistics computed in
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15
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+
* parallel via a WorkerPool. Decoded chunks are optionally cached so that
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16
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+
* a subsequent zarrGet() with the same cache avoids redundant decompression.
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17
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*
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18
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* @param image - The NgffImage to compute metadata for
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* @param options - Optional configuration for quantiles, colors, and
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* - quantiles: Tuple of (low, high) quantile values. Must be between 0 and 1,
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* with low < high. Default is [0.02, 0.98] for 2% and 98% quantiles.
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* - colors: List of hex color strings (without #) for each channel.
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35
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* Must be 6-digit hexadecimal strings (e.g., "FF0000" for red).
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36
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-
* If not provided, uses white for single channel or Glasbey
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* progression for multi-channel.
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38
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* - labels: List of label strings for each channel.
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39
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* If not provided, uses empty strings.
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19
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+
* @param options - Optional configuration for quantiles, colors, labels, and cache
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20
|
* @returns Promise resolving to Omero metadata with computed window parameters
|
|
41
|
-
* @throws {Error} If quantiles are invalid, colors are invalid format,
|
|
42
|
-
* or not enough colors/labels provided.
|
|
43
|
-
*
|
|
44
|
-
* @example
|
|
45
|
-
* ```ts
|
|
46
|
-
* const omero = await computeOmeroFromNgffImage(image);
|
|
47
|
-
* multiscales.metadata.omero = omero;
|
|
48
|
-
* ```
|
|
49
21
|
*/
|
|
50
22
|
export declare function computeOmeroFromNgffImage(image: NgffImage, options?: ComputeOmeroOptions): Promise<Omero>;
|
|
51
23
|
/**
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"compute_omero.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"compute_omero.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero.ts"],"names":[],"mappings":"AAmBA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACxD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,2BAA2B,CAAC;AAEvD,OAAO,EAGL,KAAK,kCAAkC,EACvC,KAAK,mBAAmB,EAOzB,MAAM,2BAA2B,CAAC;AAKnC,OAAO,EACL,wBAAwB,EACxB,KAAK,kCAAkC,EACvC,KAAK,mBAAmB,EACxB,cAAc,EACd,gBAAgB,EAChB,cAAc,EACd,oBAAoB,EACpB,aAAa,EACb,iBAAiB,GAClB,MAAM,2BAA2B,CAAC;AAuCnC;;;GAGG;AACH,wBAAgB,wBAAwB,IAAI,IAAI,CAS/C;AAoQD;;;;;;;;;;GAUG;AACH,wBAAsB,yBAAyB,CAC7C,KAAK,EAAE,SAAS,EAChB,OAAO,GAAE,mBAAwB,GAChC,OAAO,CAAC,KAAK,CAAC,CA0KhB;AAMD;;;;;;;;;GASG;AACH,wBAAsB,2BAA2B,CAC/C,WAAW,EAAE,WAAW,EACxB,OAAO,GAAE,kCAAuC,GAC/C,OAAO,CAAC,KAAK,CAAC,CAoBhB"}
|