@fideus-labs/ngff-zarr 0.8.0 → 0.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (33) hide show
  1. package/esm/browser-mod.d.ts +2 -2
  2. package/esm/browser-mod.d.ts.map +1 -1
  3. package/esm/browser-mod.js +2 -2
  4. package/esm/browser-mod.js.map +1 -1
  5. package/esm/mod.d.ts +1 -1
  6. package/esm/mod.d.ts.map +1 -1
  7. package/esm/mod.js +1 -1
  8. package/esm/mod.js.map +1 -1
  9. package/esm/utils/compute_omero-shared.d.ts +12 -0
  10. package/esm/utils/compute_omero-shared.d.ts.map +1 -1
  11. package/esm/utils/compute_omero-shared.js +28 -0
  12. package/esm/utils/compute_omero-shared.js.map +1 -1
  13. package/esm/utils/compute_omero.d.ts +10 -38
  14. package/esm/utils/compute_omero.d.ts.map +1 -1
  15. package/esm/utils/compute_omero.js +332 -79
  16. package/esm/utils/compute_omero.js.map +1 -1
  17. package/esm/utils/omero_worker_rpc.d.ts +37 -0
  18. package/esm/utils/omero_worker_rpc.d.ts.map +1 -0
  19. package/esm/utils/omero_worker_rpc.js +156 -0
  20. package/esm/utils/omero_worker_rpc.js.map +1 -0
  21. package/esm/workers/omero_codec_worker.d.ts +2 -0
  22. package/esm/workers/omero_codec_worker.d.ts.map +1 -0
  23. package/esm/workers/omero_codec_worker.js +215 -0
  24. package/esm/workers/omero_codec_worker.js.map +1 -0
  25. package/package.json +2 -3
  26. package/esm/utils/compute_omero-browser.d.ts +0 -45
  27. package/esm/utils/compute_omero-browser.d.ts.map +0 -1
  28. package/esm/utils/compute_omero-browser.js +0 -250
  29. package/esm/utils/compute_omero-browser.js.map +0 -1
  30. package/esm/workers/compute_omero_worker.d.ts +0 -47
  31. package/esm/workers/compute_omero_worker.d.ts.map +0 -1
  32. package/esm/workers/compute_omero_worker.js +0 -113
  33. package/esm/workers/compute_omero_worker.js.map +0 -1
@@ -12,8 +12,8 @@ export * from "./schemas/multiscales.js";
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  export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/validation.js";
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  export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, } from "./utils/factory.js";
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  export { getMethodMetadata } from "./utils/method_metadata.js";
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- export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, isUsingWorker, terminateOmeroWorker, } from "./utils/compute_omero-browser.js";
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- export type { ComputeOmeroFromMultiscalesOptions, ComputeOmeroOptions, } from "./utils/compute_omero-browser.js";
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+ export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
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+ export type { ComputeOmeroFromMultiscalesOptions, ComputeOmeroOptions, } from "./utils/compute_omero.js";
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  export { buildOmeroFromAccumulators, computeChannelStatistics, createAccumulator, extractChannel, finalizeStatistics, QUANTILE_SAMPLE_SIZE, updateAccumulator, validateQuantiles, } from "./utils/compute_omero-shared.js";
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  export type { ChannelStatisticsAccumulator } from "./utils/compute_omero-shared.js";
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  export { terminateWorkerPool, zarrGet, zarrSet } from "./utils/worker_pool.js";
@@ -1 +1 @@
1
- {"version":3,"file":"browser-mod.d.ts","sourceRoot":"","sources":["../src/browser-mod.ts"],"names":[],"mappings":"AAOA,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AAEvC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAE/D,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,aAAa,EACb,oBAAoB,GACrB,MAAM,kCAAkC,CAAC;AAC1C,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,kCAAkC,CAAC;AAG1C,OAAO,EACL,0BAA0B,EAC1B,wBAAwB,EACxB,iBAAiB,EACjB,cAAc,EACd,kBAAkB,EAClB,oBAAoB,EACpB,iBAAiB,EACjB,iBAAiB,GAClB,MAAM,iCAAiC,CAAC;AACzC,YAAY,EAAE,4BAA4B,EAAE,MAAM,iCAAiC,CAAC;AACpF,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAK/E,OAAO,EACL,KAAK,UAAU,EACf,YAAY,EACZ,KAAK,mBAAmB,EACxB,KAAK,WAAW,GACjB,MAAM,gCAAgC,CAAC;AACxC,OAAO,EACL,SAAS,EACT,UAAU,EACV,KAAK,iBAAiB,EACtB,aAAa,EACb,KAAK,oBAAoB,GAC1B,MAAM,8BAA8B,CAAC;AAGtC,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,gBAAgB,EAChB,iBAAiB,EACjB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC;AAGhE,cAAc,qCAAqC,CAAC;AAGpD,OAAO,EACL,mBAAmB,EACnB,KAAK,0BAA0B,GAChC,MAAM,iCAAiC,CAAC"}
1
+ {"version":3,"file":"browser-mod.d.ts","sourceRoot":"","sources":["../src/browser-mod.ts"],"names":[],"mappings":"AAOA,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AAEvC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAE/D,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAGlC,OAAO,EACL,0BAA0B,EAC1B,wBAAwB,EACxB,iBAAiB,EACjB,cAAc,EACd,kBAAkB,EAClB,oBAAoB,EACpB,iBAAiB,EACjB,iBAAiB,GAClB,MAAM,iCAAiC,CAAC;AACzC,YAAY,EAAE,4BAA4B,EAAE,MAAM,iCAAiC,CAAC;AACpF,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAK/E,OAAO,EACL,KAAK,UAAU,EACf,YAAY,EACZ,KAAK,mBAAmB,EACxB,KAAK,WAAW,GACjB,MAAM,gCAAgC,CAAC;AACxC,OAAO,EACL,SAAS,EACT,UAAU,EACV,KAAK,iBAAiB,EACtB,aAAa,EACb,KAAK,oBAAoB,GAC1B,MAAM,8BAA8B,CAAC;AAGtC,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,gBAAgB,EAChB,iBAAiB,EACjB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC;AAGhE,cAAc,qCAAqC,CAAC;AAGpD,OAAO,EACL,mBAAmB,EACnB,KAAK,0BAA0B,GAChC,MAAM,iCAAiC,CAAC"}
@@ -19,8 +19,8 @@ export * from "./schemas/multiscales.js";
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  export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/validation.js";
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  export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, } from "./utils/factory.js";
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  export { getMethodMetadata } from "./utils/method_metadata.js";
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- // Browser-specific OMERO computation with WebWorker support
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- export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, isUsingWorker, terminateOmeroWorker, } from "./utils/compute_omero-browser.js";
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+ // OMERO computation with WorkerPool
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+ export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
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  // Shared OMERO computation functions for benchmarking and direct use
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  export { buildOmeroFromAccumulators, computeChannelStatistics, createAccumulator, extractChannel, finalizeStatistics, QUANTILE_SAMPLE_SIZE, updateAccumulator, validateQuantiles, } from "./utils/compute_omero-shared.js";
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  export { terminateWorkerPool, zarrGet, zarrSet } from "./utils/worker_pool.js";
@@ -1 +1 @@
1
- {"version":3,"file":"browser-mod.js","sourceRoot":"","sources":["../src/browser-mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,oCAAoC;AACpC,wEAAwE;AACxE,EAAE;AACF,kFAAkF;AAClF,yEAAyE;AACzE,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AAEvC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,4DAA4D;AAC5D,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,aAAa,EACb,oBAAoB,GACrB,MAAM,kCAAkC,CAAC;AAM1C,qEAAqE;AACrE,OAAO,EACL,0BAA0B,EAC1B,wBAAwB,EACxB,iBAAiB,EACjB,cAAc,EACd,kBAAkB,EAClB,oBAAoB,EACpB,iBAAiB,EACjB,iBAAiB,GAClB,MAAM,iCAAiC,CAAC;AAEzC,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAE/E,iCAAiC;AACjC,0EAA0E;AAC1E,iFAAiF;AACjF,OAAO,EAEL,YAAY,GAGb,MAAM,gCAAgC,CAAC;AACxC,OAAO,EACL,SAAS,EACT,UAAU,EAEV,aAAa,GAEd,MAAM,8BAA8B,CAAC;AAEtC,gBAAgB;AAChB,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,gBAAgB,EAChB,iBAAiB,EACjB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAG1B,wCAAwC;AACxC,cAAc,qCAAqC,CAAC;AAEpD,gCAAgC;AAChC,OAAO,EACL,mBAAmB,GAEpB,MAAM,iCAAiC,CAAC"}
1
+ {"version":3,"file":"browser-mod.js","sourceRoot":"","sources":["../src/browser-mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,oCAAoC;AACpC,wEAAwE;AACxE,EAAE;AACF,kFAAkF;AAClF,yEAAyE;AACzE,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AAEvC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,oCAAoC;AACpC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAMlC,qEAAqE;AACrE,OAAO,EACL,0BAA0B,EAC1B,wBAAwB,EACxB,iBAAiB,EACjB,cAAc,EACd,kBAAkB,EAClB,oBAAoB,EACpB,iBAAiB,EACjB,iBAAiB,GAClB,MAAM,iCAAiC,CAAC;AAEzC,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAE/E,iCAAiC;AACjC,0EAA0E;AAC1E,iFAAiF;AACjF,OAAO,EAEL,YAAY,GAGb,MAAM,gCAAgC,CAAC;AACxC,OAAO,EACL,SAAS,EACT,UAAU,EAEV,aAAa,GAEd,MAAM,8BAA8B,CAAC;AAEtC,gBAAgB;AAChB,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,gBAAgB,EAChB,iBAAiB,EACjB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAG1B,wCAAwC;AACxC,cAAc,qCAAqC,CAAC;AAEpD,gCAAgC;AAChC,OAAO,EACL,mBAAmB,GAEpB,MAAM,iCAAiC,CAAC"}
package/esm/mod.d.ts CHANGED
@@ -16,7 +16,7 @@ export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/valida
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  export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, } from "./utils/factory.js";
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  export { getMethodMetadata } from "./utils/method_metadata.js";
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  export { detectVersion, extractMethodMetadata, parseOmero, } from "./utils/parse_metadata.js";
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- export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, } from "./utils/compute_omero.js";
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+ export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
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  export type { ComputeOmeroFromMultiscalesOptions, ComputeOmeroOptions, } from "./utils/compute_omero.js";
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  export { fromZarrAttrsV04, fromZarrAttrsV05 } from "./utils/from_zarr_attrs.js";
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  export { terminateWorkerPool, zarrGet, zarrSet } from "./utils/worker_pool.js";
package/esm/mod.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"mod.d.ts","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAEA,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AACvC,cAAc,iBAAiB,CAAC;AAChC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,+BAA+B,CAAC;AAE9C,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,GACf,MAAM,0BAA0B,CAAC;AAClC,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,4BAA4B,CAAC;AAChF,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAE/E,cAAc,wBAAwB,CAAC;AACvC,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,YAAY,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAC1D,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAChD,cAAc,aAAa,CAAC;AAG5B,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC"}
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+ {"version":3,"file":"mod.d.ts","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAEA,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AACvC,cAAc,iBAAiB,CAAC;AAChC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,+BAA+B,CAAC;AAE9C,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,4BAA4B,CAAC;AAChF,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAE/E,cAAc,wBAAwB,CAAC;AACvC,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,YAAY,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAC1D,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAChD,cAAc,aAAa,CAAC;AAG5B,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC"}
package/esm/mod.js CHANGED
@@ -18,7 +18,7 @@ export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/valida
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  export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, } from "./utils/factory.js";
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  export { getMethodMetadata } from "./utils/method_metadata.js";
20
20
  export { detectVersion, extractMethodMetadata, parseOmero, } from "./utils/parse_metadata.js";
21
- export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, } from "./utils/compute_omero.js";
21
+ export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
22
22
  export { fromZarrAttrsV04, fromZarrAttrsV05 } from "./utils/from_zarr_attrs.js";
23
23
  export { terminateWorkerPool, zarrGet, zarrSet } from "./utils/worker_pool.js";
24
24
  export * from "./io/from_ngff_zarr.js";
package/esm/mod.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"mod.js","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AACvC,cAAc,iBAAiB,CAAC;AAChC,cAAc,gBAAgB,CAAC;AAC/B,cAAc,+BAA+B,CAAC;AAE9C,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAKlC,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,4BAA4B,CAAC;AAChF,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAE/E,cAAc,wBAAwB,CAAC;AACvC,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AAEjD,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAChD,cAAc,aAAa,CAAC;AAE5B,gBAAgB;AAChB,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC"}
@@ -63,6 +63,11 @@ export declare function finalizeStatistics(acc: ChannelStatisticsAccumulator, qu
63
63
  qLow: number;
64
64
  qHigh: number;
65
65
  };
66
+ /**
67
+ * Merge two channel statistics accumulators.
68
+ * Used to combine partial results from parallel per-chunk workers.
69
+ */
70
+ export declare function mergeAccumulators(a: ChannelStatisticsAccumulator, b: ChannelStatisticsAccumulator): ChannelStatisticsAccumulator;
66
71
  /**
67
72
  * Compute channel statistics from array data (non-streaming version).
68
73
  * For datasets larger than QUANTILE_SAMPLE_SIZE, uses reservoir sampling.
@@ -87,6 +92,13 @@ export interface ComputeOmeroOptions {
87
92
  colors?: string[] | undefined;
88
93
  /** Optional list of label strings for each channel. */
89
94
  labels?: string[] | undefined;
95
+ /**
96
+ * Optional decoded-chunk cache. When provided, decoded chunks are cached
97
+ * during omero computation so that subsequent zarrGet() calls with the
98
+ * same cache get cache hits (no re-decode). Any object with get(key)
99
+ * and set(key, value) works — a plain Map is the simplest option.
100
+ */
101
+ cache?: import("@fideus-labs/fizarrita").ChunkCache | undefined;
90
102
  }
91
103
  /**
92
104
  * Options for computing OMERO metadata from multiscales.
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"compute_omero-shared.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero-shared.ts"],"names":[],"mappings":"AAGA;;;;GAIG;AAEH,OAAO,KAAK,EACV,KAAK,EAGN,MAAM,2BAA2B,CAAC;AAEnC;;;;;GAKG;AACH,eAAO,MAAM,cAAc,EAAE,SAAS,MAAM,EAiQlC,CAAC;AAEX;;;GAGG;AACH,eAAO,MAAM,oBAAoB,QAAS,CAAC;AAE3C;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,EAAE,CAS5D;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAanE;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAOjD;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,YAAY,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,CAkBzE;AAED;;;GAGG;AACH,MAAM,WAAW,4BAA4B;IAC3C,GAAG,EAAE,MAAM,CAAC;IACZ,GAAG,EAAE,MAAM,CAAC;IACZ,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,wBAAgB,iBAAiB,IAAI,4BAA4B,CAOhE;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,GAAG,EAAE,4BAA4B,EACjC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,GACvB,IAAI,CAwBN;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAChC,GAAG,EAAE,4BAA4B,EACjC,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAC1B;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAY3D;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,CAAC,EAAE,4BAA4B,EAC/B,CAAC,EAAE,4BAA4B,GAC9B,4BAA4B,CA0B9B;AAED;;;GAGG;AACH,wBAAgB,wBAAwB,CACtC,IAAI,EAAE,SAAS,CAAC,MAAM,CAAC,EACvB,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAC1B;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAI3D;AAED;;GAEG;AACH,wBAAgB,cAAc,CAC5B,IAAI,EAAE,SAAS,CAAC,MAAM,CAAC,EACvB,KAAK,EAAE,SAAS,MAAM,EAAE,EACxB,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,MAAM,EAAE,CA8BV;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,4FAA4F;IAC5F,SAAS,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC7B,uEAAuE;IACvE,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B,uDAAuD;IACvD,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B;;;;;OAKG;IACH,KAAK,CAAC,EAAE,OAAO,wBAAwB,EAAE,UAAU,GAAG,SAAS,CAAC;CACjE;AAED;;GAEG;AACH,MAAM,WAAW,kCACf,SAAQ,mBAAmB;CAAG;AAEhC;;GAEG;AACH,wBAAgB,0BAA0B,CACxC,YAAY,EAAE,4BAA4B,EAAE,EAC5C,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,EAC3B,MAAM,CAAC,EAAE,MAAM,EAAE,EACjB,MAAM,CAAC,EAAE,MAAM,EAAE,GAChB,KAAK,CAkDP;AAED;;GAEG;AACH,MAAM,WAAW,uBAAuB;IACtC,KAAK,EAAE,SAAS,MAAM,EAAE,CAAC;IACzB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC5B,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;CAC/B;AAED;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,SAAS,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;CAC9B"}
@@ -378,6 +378,34 @@ export function finalizeStatistics(acc, quantiles) {
378
378
  const qHigh = computeQuantile(acc.sample, quantiles[1]);
379
379
  return { min: acc.min, max: acc.max, qLow, qHigh };
380
380
  }
381
+ /**
382
+ * Merge two channel statistics accumulators.
383
+ * Used to combine partial results from parallel per-chunk workers.
384
+ */
385
+ export function mergeAccumulators(a, b) {
386
+ const merged = {
387
+ min: Math.min(a.min, b.min),
388
+ max: Math.max(a.max, b.max),
389
+ count: a.count + b.count,
390
+ sample: [...a.sample, ...b.sample],
391
+ };
392
+ // Downsample if combined reservoir exceeds limit
393
+ if (merged.sample.length > QUANTILE_SAMPLE_SIZE) {
394
+ // Use reservoir sampling over the concatenated sample for unbiased downsampling
395
+ const k = QUANTILE_SAMPLE_SIZE;
396
+ const n = merged.sample.length;
397
+ // Treat the first k elements as the initial reservoir and
398
+ // stream the remaining elements, applying the reservoir update rule.
399
+ for (let i = k; i < n; i++) {
400
+ const j = Math.floor(Math.random() * (i + 1));
401
+ if (j < k) {
402
+ merged.sample[j] = merged.sample[i];
403
+ }
404
+ }
405
+ merged.sample.length = k;
406
+ }
407
+ return merged;
408
+ }
381
409
  /**
382
410
  * Compute channel statistics from array data (non-streaming version).
383
411
  * For datasets larger than QUANTILE_SAMPLE_SIZE, uses reservoir sampling.
@@ -1 +1 @@
1
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@@ -1,51 +1,23 @@
1
- /**
2
- * Compute OMERO metadata from NgffImage data.
3
- *
4
- * This is the main-thread (Node.js/Deno) implementation.
5
- * For browser environments with WebWorker support, see compute_omero-browser.ts.
6
- */
7
1
  import type { NgffImage } from "../types/ngff_image.js";
8
2
  import type { Multiscales } from "../types/multiscales.js";
9
3
  import type { Omero } from "../types/zarr_metadata.js";
10
- export { computeChannelStatistics, type ComputeOmeroFromMultiscalesOptions, type ComputeOmeroOptions, extractChannel, getDefaultColors, GLASBEY_COLORS, QUANTILE_SAMPLE_SIZE, validateColor, validateQuantiles, } from "./compute_omero-shared.js";
11
4
  import { type ComputeOmeroFromMultiscalesOptions, type ComputeOmeroOptions } from "./compute_omero-shared.js";
5
+ export { computeChannelStatistics, type ComputeOmeroFromMultiscalesOptions, type ComputeOmeroOptions, extractChannel, getDefaultColors, GLASBEY_COLORS, QUANTILE_SAMPLE_SIZE, validateColor, validateQuantiles, } from "./compute_omero-shared.js";
6
+ /**
7
+ * Terminate the omero computation worker pool and release resources.
8
+ * Call this when you're done with OMERO computations to free memory.
9
+ */
10
+ export declare function terminateOmeroWorkerPool(): void;
12
11
  /**
13
12
  * Compute OMERO metadata from an NgffImage.
14
13
  *
15
- * This function computes visualization parameters (OMERO metadata) from image data:
16
- * - min/max: The actual data range
17
- * - start/end: Display window based on quantiles (default 2% and 98%)
18
- *
19
- * For multi-channel images (with 'c' dimension), statistics are computed
20
- * separately for each channel, resulting in per-channel OMERO windows.
21
- *
22
- * Memory requirements: This function loads the entire image data into memory
23
- * for statistics computation. For large images, use the lowest resolution
24
- * image from a multiscales pyramid.
25
- *
26
- * Edge cases:
27
- * - If all values in a channel are NaN, the statistics will be NaN.
28
- * - If a channel has constant values, min/max/start/end will all be the same.
14
+ * Each zarr chunk is decoded and its per-channel statistics computed in
15
+ * parallel via a WorkerPool. Decoded chunks are optionally cached so that
16
+ * a subsequent zarrGet() with the same cache avoids redundant decompression.
29
17
  *
30
18
  * @param image - The NgffImage to compute metadata for
31
- * @param options - Optional configuration for quantiles, colors, and labels
32
- * - quantiles: Tuple of (low, high) quantile values. Must be between 0 and 1,
33
- * with low < high. Default is [0.02, 0.98] for 2% and 98% quantiles.
34
- * - colors: List of hex color strings (without #) for each channel.
35
- * Must be 6-digit hexadecimal strings (e.g., "FF0000" for red).
36
- * If not provided, uses white for single channel or Glasbey
37
- * progression for multi-channel.
38
- * - labels: List of label strings for each channel.
39
- * If not provided, uses empty strings.
19
+ * @param options - Optional configuration for quantiles, colors, labels, and cache
40
20
  * @returns Promise resolving to Omero metadata with computed window parameters
41
- * @throws {Error} If quantiles are invalid, colors are invalid format,
42
- * or not enough colors/labels provided.
43
- *
44
- * @example
45
- * ```ts
46
- * const omero = await computeOmeroFromNgffImage(image);
47
- * multiscales.metadata.omero = omero;
48
- * ```
49
21
  */
50
22
  export declare function computeOmeroFromNgffImage(image: NgffImage, options?: ComputeOmeroOptions): Promise<Omero>;
51
23
  /**
@@ -1 +1 @@
1
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