@elevasis/core 0.23.0 → 0.24.1

package/src/platform/registry/resource-registry.ts

@@ -1,890 +1,890 @@
-/**
- * ResourceRegistry - Resource discovery and lookup
- * Handles resource definitions from OrganizationRegistry
- *
- * Features:
- * - Resource discovery by organization
- * - Startup validation (duplicate IDs, model configs, relationships, interface-schema alignment)
- * - Pre-serialization cache for instant API responses
- * - Command View data generation
- */
-
-import type { WorkflowDefinition } from '../../execution/engine/workflow/types'
-import type { AgentDefinition } from '../../execution/engine/agent/core/types'
-import type {
-  OrganizationModel,
-  OrganizationModelResources,
-  OrganizationModelSystems
+/**
+ * ResourceRegistry - Resource discovery and lookup
+ * Handles resource definitions from OrganizationRegistry
+ *
+ * Features:
+ * - Resource discovery by organization
+ * - Startup validation (duplicate IDs, model configs, relationships, interface-schema alignment)
+ * - Pre-serialization cache for instant API responses
+ * - Command View data generation
+ */
+
+import type { WorkflowDefinition } from '../../execution/engine/workflow/types'
+import type { AgentDefinition } from '../../execution/engine/agent/core/types'
+import type {
+  OrganizationModel
 } from '../../organization-model/types'
-import type { ResourceEntry } from '../../organization-model/domains/resources'
-import type { SystemEntry } from '../../organization-model/domains/systems'
-import { listAllSystems } from '../../organization-model/helpers'
-import type {
-  ResourceStatus,
-  ResourceDefinition,
-  ResourceList,
-  TriggerDefinition,
-  IntegrationDefinition,
-  ResourceRelationships,
-  ExternalResourceDefinition,
-  HumanCheckpointDefinition
-} from './types'
-import type {
-  SerializedOrganizationData,
-  SerializedAgentDefinition,
-  SerializedWorkflowDefinition,
-  CommandViewData
-} from './serialized-types'
-import { validateDeploymentSpec, validateRelationships } from './validation'
-import { serializeAllOrganizations, serializeOrganization } from './serialization'
-import { isReservedResourceId } from './reserved'
-
-/** Filter out archived resources from an organization's resource collection */
-function filterArchived(org: DeploymentSpec): DeploymentSpec {
-  return {
-    ...org,
-    workflows: org.workflows?.filter((w) => !w.config.archived),
-    agents: org.agents?.filter((a) => !a.config.archived),
-    triggers: org.triggers?.filter((t) => !t.archived),
-    integrations: org.integrations?.filter((i) => !i.archived),
-    externalResources: org.externalResources?.filter((e) => !e.archived),
-    humanCheckpoints: org.humanCheckpoints?.filter((h) => !h.archived)
-  }
-}
-
-function summarizeSystem(system: SystemEntry | undefined): ResourceDefinition['system'] {
-  if (!system) return undefined
-
-  return {
-    id: system.id,
-    title: system.label ?? system.title,
-    description: system.description,
-    kind: system.kind,
-    lifecycle: system.lifecycle
-  }
-}
-
-/**
- * Configuration for a remotely-deployed organization
- *
- * Stored alongside runtime-registered organizations to support
- * worker thread execution branching and credential management.
- */
-export interface RemoteOrgConfig {
-  /** Supabase Storage path: "{orgId}/{deploymentId}/bundle.js" */
-  storagePath: string
-  /** Deployment record ID */
-  deploymentId: string
-  /** OS temp path to bundle -- set after first download, used by worker threads */
-  cachedTempPath?: string
-  /** Platform tool name -> credential name mapping */
-  toolCredentials?: Record<string, string>
-  /** SDK version used to deploy this bundle */
-  sdkVersion?: string
-  /** Deployment version (semver) of the deployed bundle */
-  deploymentVersion?: string
-}
-
-/**
- * Configuration for a first-class System resource.
- *
- * System resources are owned by the platform, registered under the 'system' org,
- * and execute via the static-bundle loader mode in executeInWorker(). The moduleId
- * maps to an entry in the API's STATIC_MODULE_MAP.
- */
-export interface SystemConfig {
-  kind: 'static'
-  moduleId: string
-  /** Always undefined for system resources; present for API compatibility with RemoteOrgConfig consumers */
-  sdkVersion?: never
-}
-
-/**
- * Organization-specific resource collection
- *
- * Complete manifest of all automation resources for an organization.
- * Used by ResourceRegistry for discovery and Command View for visualization.
- */
-export interface DeploymentSpec {
+import type { ResourceEntry } from '../../organization-model/domains/resources'
+import type { SystemEntry } from '../../organization-model/domains/systems'
+import { listAllSystems } from '../../organization-model/helpers'
+import type {
+  ResourceStatus,
+  ResourceDefinition,
+  ResourceList,
+  TriggerDefinition,
+  IntegrationDefinition,
+  ResourceRelationships,
+  ExternalResourceDefinition,
+  HumanCheckpointDefinition
+} from './types'
+import type {
+  SerializedOrganizationData,
+  SerializedAgentDefinition,
+  SerializedWorkflowDefinition,
+  CommandViewData
+} from './serialized-types'
+import { validateDeploymentSpec, validateRelationships } from './validation'
+import { serializeAllOrganizations, serializeOrganization } from './serialization'
+import { isReservedResourceId } from './reserved'
+
+/** Filter out archived resources from an organization's resource collection */
+function filterArchived(org: DeploymentSpec): DeploymentSpec {
+  return {
+    ...org,
+    workflows: org.workflows?.filter((w) => !w.config.archived),
+    agents: org.agents?.filter((a) => !a.config.archived),
+    triggers: org.triggers?.filter((t) => !t.archived),
+    integrations: org.integrations?.filter((i) => !i.archived),
+    externalResources: org.externalResources?.filter((e) => !e.archived),
+    humanCheckpoints: org.humanCheckpoints?.filter((h) => !h.archived)
+  }
+}
+
+function summarizeSystem(system: SystemEntry | undefined): ResourceDefinition['system'] {
+  if (!system) return undefined
+
+  return {
+    id: system.id,
+    title: system.label ?? system.title,
+    description: system.description,
+    kind: system.kind,
+    lifecycle: system.lifecycle
+  }
+}
+
+/**
+ * Configuration for a remotely-deployed organization
+ *
+ * Stored alongside runtime-registered organizations to support
+ * worker thread execution branching and credential management.
+ */
+export interface RemoteOrgConfig {
+  /** Supabase Storage path: "{orgId}/{deploymentId}/bundle.js" */
+  storagePath: string
+  /** Deployment record ID */
+  deploymentId: string
+  /** OS temp path to bundle -- set after first download, used by worker threads */
+  cachedTempPath?: string
+  /** Platform tool name -> credential name mapping */
+  toolCredentials?: Record<string, string>
+  /** SDK version used to deploy this bundle */
+  sdkVersion?: string
+  /** Deployment version (semver) of the deployed bundle */
+  deploymentVersion?: string
+}
+
+/**
+ * Configuration for a first-class System resource.
+ *
+ * System resources are owned by the platform, registered under the 'system' org,
+ * and execute via the static-bundle loader mode in executeInWorker(). The moduleId
+ * maps to an entry in the API's STATIC_MODULE_MAP.
+ */
+export interface SystemConfig {
+  kind: 'static'
+  moduleId: string
+  /** Always undefined for system resources; present for API compatibility with RemoteOrgConfig consumers */
+  sdkVersion?: never
+}
+
+/**
+ * Organization-specific resource collection
+ *
+ * Complete manifest of all automation resources for an organization.
+ * Used by ResourceRegistry for discovery and Command View for visualization.
+ */
+export interface DeploymentSpec {
   /** Deployment version (semver) */
   version: string
   /** Optional Organization Model governance catalog used for OM-code validation */
-  organizationModel?: {
-    systems?: OrganizationModelSystems
-    resources?: OrganizationModelResources
-  }
-  /** Workflow definitions */
-  workflows?: WorkflowDefinition[]
-  /** Agent definitions */
-  agents?: AgentDefinition[]
-
-  // Resource Manifest fields (optional for backwards compatibility)
-  /** Trigger definitions - entry points that initiate executions */
-  triggers?: TriggerDefinition[]
-  /** Integration definitions - external service connections */
-  integrations?: IntegrationDefinition[]
-  /** Explicit relationship declarations between resources */
-  relationships?: ResourceRelationships
-  /** External automation resources (n8n, Make, Zapier, etc.) */
-  externalResources?: ExternalResourceDefinition[]
-  /** Human checkpoint definitions - human decision points in automation */
-  humanCheckpoints?: HumanCheckpointDefinition[]
-}
-
-/**
- * Organization Registry type
- */
-export type OrganizationRegistry = Record<string, DeploymentSpec>
-
-export class ResourceRegistry {
-  /**
-   * Pre-serialized organization data cache
-   * Computed once at construction for static orgs, updated incrementally for runtime orgs
-   */
-  private serializedCache: Map<string, SerializedOrganizationData>
-
-  /**
-   * Per-resource remote configuration (external deployments)
-   * Key: "orgName/resourceId", Value: RemoteOrgConfig for that resource.
-   * Tracks which individual resources were added at runtime via deploy pipeline.
-   * Static and remote resources coexist in the same org.
-   */
-  private remoteResources = new Map<string, RemoteOrgConfig>()
-
-  /**
-   * System configs for first-class platform resources.
-   * Key: "orgName/resourceId", Value: SystemConfig.
-   * Registered at startup alongside registerStaticResources().
-   */
-  private systemConfigs = new Map<string, SystemConfig>()
-
-  constructor(private registry: OrganizationRegistry) {
-    this.validateRegistry()
-    this.validateRelationships()
-    this.serializedCache = serializeAllOrganizations(registry)
-  }
-
-  /**
-   * Validates registry on construction
-   * - Checks for duplicate resourceIds within organizations
-   * - Validates model configurations against constraints
-   * - Validates ExecutionInterface matches inputSchema
-   * @throws Error if validation fails
-   */
-  private validateRegistry(): void {
-    for (const [orgName, resources] of Object.entries(this.registry)) {
-      validateDeploymentSpec(orgName, resources)
-    }
-  }
-
-  /**
-   * Validates relationship declarations reference valid resources
-   * Runs at API server startup - fails fast in development
-   * @throws Error if validation fails
-   */
-  private validateRelationships(): void {
-    for (const [orgName, resources] of Object.entries(this.registry)) {
-      validateRelationships(orgName, resources)
-    }
-  }
-
-  /**
-   * Get the remote resource IDs currently registered for an organization.
-   * Used to validate redeployments against the post-swap state before any
-   * live registry mutation occurs.
-   */
-  private getRemoteResourceIds(orgName: string): Set<string> {
-    const prefix = `${orgName}/`
-    const remoteIds = new Set<string>()
-    for (const key of this.remoteResources.keys()) {
-      if (key.startsWith(prefix)) {
-        remoteIds.add(key.slice(prefix.length))
-      }
-    }
-    return remoteIds
-  }
-
-  /**
-   * Build the "static + surviving" baseline for registration validation.
-   * On redeploy, this strips the currently remote-owned resources and
-   * deployment-owned metadata so validation reflects the state after swap.
-   */
-  private buildRegistrationBase(orgName: string): DeploymentSpec | undefined {
-    const existingOrg = this.registry[orgName]
-    if (!existingOrg) return undefined
-
-    const remoteIds = this.getRemoteResourceIds(orgName)
-    if (remoteIds.size === 0) return existingOrg
-
-    const relationships = existingOrg.relationships
-      ? Object.fromEntries(
-          Object.entries(existingOrg.relationships).filter(([resourceId]) => !remoteIds.has(resourceId))
-        )
-      : undefined
-
-    return {
-      ...existingOrg,
-      version: existingOrg.version ?? '0.0.0',
-      workflows: (existingOrg.workflows ?? []).filter((w) => !remoteIds.has(w.config.resourceId)),
-      agents: (existingOrg.agents ?? []).filter((a) => !remoteIds.has(a.config.resourceId)),
-      triggers: undefined,
-      integrations: undefined,
-      humanCheckpoints: undefined,
-      externalResources: undefined,
-      relationships: relationships && Object.keys(relationships).length > 0 ? relationships : undefined
-    }
-  }
-
-  /**
-   * Validate the registry state that would exist after registration succeeds.
-   * This runs before any live mutation so invalid redeploys preserve the
-   * currently active remote resources.
-   */
-  private validateRegistrationCandidate(orgName: string, incoming: DeploymentSpec): void {
-    const base = this.buildRegistrationBase(orgName)
-
-    const candidate: DeploymentSpec = base
-      ? {
-          ...base,
-          version: incoming.version ?? base.version ?? '0.0.0',
-          workflows: [...(base.workflows ?? []), ...(incoming.workflows ?? [])],
-          agents: [...(base.agents ?? []), ...(incoming.agents ?? [])],
-          triggers: incoming.triggers,
-          integrations: incoming.integrations,
-          humanCheckpoints: incoming.humanCheckpoints,
-          externalResources: incoming.externalResources,
-          relationships: incoming.relationships
-            ? {
-                ...(base.relationships ?? {}),
-                ...incoming.relationships
-              }
-            : base.relationships
-        }
-      : {
-          ...incoming,
-          version: incoming.version ?? '0.0.0'
-        }
-
-    validateDeploymentSpec(orgName, candidate)
-    validateRelationships(orgName, candidate)
-  }
-
-  /**
-   * Get a resource definition by ID
-   * Returns full definition (WorkflowDefinition or AgentDefinition)
-   * Check definition.config.type to determine if it's a workflow or agent
-   */
-  getResourceDefinition(organizationName: string, resourceId: string): WorkflowDefinition | AgentDefinition | null {
-    const orgResources = this.registry[organizationName]
-    if (!orgResources) return null
-
-    // Check workflows first
-    const workflow = orgResources.workflows?.find((w) => w.config.resourceId === resourceId)
-    if (workflow) return workflow
-
-    // Check agents
-    const agent = orgResources.agents?.find((a) => a.config.resourceId === resourceId)
-    if (agent) return agent
-
-    return null
-  }
-
-  /**
-   * List all resources for an organization
-   * Returns ResourceDefinition metadata (not full definitions)
-   *
-   * All resources are returned regardless of server environment.
-   * Pass an explicit `environment` filter to get only 'dev' or 'prod' resources.
-   */
-  listResourcesForOrganization(organizationName: string, environment?: ResourceStatus): ResourceList {
-    const orgResources = this.registry[organizationName]
-    if (!orgResources) {
-      return {
-        workflows: [],
-        agents: [],
-        total: 0,
-        organizationName,
-        environment
-      }
-    }
-
-    const resourcesById = new Map(Object.values(orgResources.organizationModel?.resources ?? {}).map((r) => [r.id, r]))
-    // Build a path-keyed map that includes nested systems (DFS via listAllSystems).
-    // resource.systemPath is the dot-separated system path used as the lookup key.
-    const omSystems = orgResources.organizationModel?.systems
-    const systemsByPath = new Map<string, SystemEntry>(
-      omSystems
-        ? listAllSystems({ systems: omSystems } as OrganizationModel).map(({ path, system }) => [path, system])
-        : []
-    )
-    const getGovernanceMetadata = (
-      resourceId: string,
-      descriptor: ResourceEntry | undefined
-    ): Pick<ResourceDefinition, 'systemPath' | 'system' | 'governanceStatus'> => {
-      const resource = descriptor ?? resourcesById.get(resourceId)
-      if (!resource) return {}
-
-      return {
-        systemPath: resource.systemPath,
-        system: summarizeSystem(systemsByPath.get(resource.systemPath)),
-        governanceStatus: resource.status
-      }
-    }
-
-    // Map workflows to ResourceDefinition metadata and filter by environment
-    const workflows: ResourceDefinition[] = (orgResources.workflows || [])
-      .map((def) => ({
-        resourceId: def.config.resourceId,
-        name: def.config.name,
-        description: def.config.description,
-        version: def.config.version,
-        type: def.config.type,
-        status: def.config.status,
-        links: def.config.links,
-        category: def.config.category,
-        origin: this.remoteResources.has(`${organizationName}/${def.config.resourceId}`)
-          ? ('remote' as const)
-          : ('local' as const),
-        ...getGovernanceMetadata(def.config.resourceId, def.config.resource)
-      }))
-      .filter((resource) => !environment || resource.status === environment)
-
-    // Map agents to ResourceDefinition metadata and filter by environment
-    const agents: ResourceDefinition[] = (orgResources.agents || [])
-      .map((def) => ({
-        resourceId: def.config.resourceId,
-        name: def.config.name,
-        description: def.config.description,
-        version: def.config.version,
-        type: def.config.type,
-        status: def.config.status,
-        links: def.config.links,
-        category: def.config.category,
-        sessionCapable: def.config.sessionCapable ?? false,
-        origin: this.remoteResources.has(`${organizationName}/${def.config.resourceId}`)
-          ? ('remote' as const)
-          : ('local' as const),
-        ...getGovernanceMetadata(def.config.resourceId, def.config.resource)
-      }))
-      .filter((resource) => !environment || resource.status === environment)
-
-    return {
-      workflows,
-      agents,
-      total: workflows.length + agents.length,
-      organizationName,
-      environment
-    }
-  }
-
-  /**
-   * List all resources from all organizations
-   * NOTE: For debugging only - returns raw registry data
-   */
-  listAllResources(): OrganizationRegistry {
-    return this.registry
-  }
-
-  // ============================================================================
-  // Runtime Organization Registration (External Deployments)
-  // ============================================================================
-
-  /**
-   * Register external resources at runtime
-   *
-   * Called during deploy pipeline when an external developer deploys their bundle.
-   * Merges the incoming stub definitions into the org's registry and stores
-   * per-resource remote config for worker thread execution branching.
-   *
-   * Static and remote resources coexist in the same org. If the org already
-   * has static resources, the incoming remote resources are merged alongside them.
-   * If redeploying (some resources already registered as remote for this org),
-   * the previous remote resources are unregistered first.
-   *
-   * @param orgName - Organization name (used as registry key)
-   * @param org - Stub resource definitions (workflows/agents with placeholder handlers)
-   * @param remote - Remote configuration (bundle path, deployment ID, env vars)
-   * @throws Error if incoming resourceId conflicts with a static resource
-   * @throws Error if incoming deployment contains duplicate resourceIds
-   */
-  registerOrganization(orgName: string, org: DeploymentSpec, remote: RemoteOrgConfig): void {
-    // Filter out archived resources before any processing
-    org = filterArchived(org)
-
-    // Collect all incoming resource IDs for conflict checking
-    const incomingWorkflowIds = (org.workflows ?? []).map((w) => w.config.resourceId)
-    const incomingAgentIds = (org.agents ?? []).map((a) => a.config.resourceId)
-    const incomingIds = [...incomingWorkflowIds, ...incomingAgentIds]
-
-    // Check for intra-deployment duplicates
-    const seen = new Set<string>()
-    for (const id of incomingIds) {
-      if (seen.has(id)) {
-        throw new Error(`Duplicate resource ID '${id}' in deployment. Each resource must have a unique ID.`)
-      }
-      seen.add(id)
-    }
-
-    // Check for reserved resource IDs (cannot be claimed by external deployments)
-    for (const id of incomingIds) {
-      if (isReservedResourceId(id)) {
-        throw new Error(
-          `Resource ID '${id}' is reserved for platform use. External deployments cannot use reserved resource IDs.`
-        )
-      }
-    }
-
-    // Check for conflicts against the static/surviving org state.
-    // On redeploy, current remote resources are excluded so a deployment can
-    // legitimately replace its own resource IDs without colliding with itself.
-    const validationBase = this.buildRegistrationBase(orgName)
-    if (validationBase) {
-      const staticWorkflowIds = new Set((validationBase.workflows ?? []).map((w) => w.config.resourceId))
-      const staticAgentIds = new Set((validationBase.agents ?? []).map((a) => a.config.resourceId))
-
-      for (const id of incomingIds) {
-        if (staticWorkflowIds.has(id) || staticAgentIds.has(id)) {
-          throw new Error(
-            `Resource '${id}' already exists in '${orgName}' as an internal resource. External deployments cannot override internal resources.`
-          )
-        }
-      }
-    }
-
-    // Validate the merged deployment shape before mutating the live registry.
-    // This keeps the current deployment intact if a redeploy introduces
-    // invalid relationships or other registry-level validation failures.
-    this.validateRegistrationCandidate(orgName, org)
-
-    // If redeploying (some resources already registered as remote for this org), clean up only
-    // after validation succeeds so a failed redeploy preserves the current remote resources.
-    if (this.isRemote(orgName)) {
-      this.unregisterOrganization(orgName)
-    }
-
-    // Merge incoming resources into the org (or create new org entry)
-    const existingOrg = this.registry[orgName]
-    if (existingOrg) {
-      existingOrg.workflows = [...(existingOrg.workflows ?? []), ...(org.workflows ?? [])]
-      existingOrg.agents = [...(existingOrg.agents ?? []), ...(org.agents ?? [])]
-      // Deployment-owned metadata: replace entirely (unregister cleared these)
-      existingOrg.triggers = org.triggers
-      existingOrg.integrations = org.integrations
-      existingOrg.humanCheckpoints = org.humanCheckpoints
-      existingOrg.externalResources = org.externalResources
-      if (org.relationships) {
-        existingOrg.relationships = {
-          ...(existingOrg.relationships ?? {}),
-          ...org.relationships
-        }
-      }
-    } else {
-      this.registry[orgName] = org
-    }
-
-    // Populate per-resource remote config entries
-    for (const id of incomingIds) {
-      this.remoteResources.set(`${orgName}/${id}`, remote)
-    }
-
-    // Rebuild serialized cache for the full merged org
-    this.serializedCache.set(orgName, serializeOrganization(this.registry[orgName]))
-  }
-
-  /**
-   * Patch serialized cache with pre-serialized schemas from an external manifest.
-   *
-   * External deployments use stub definitions with z.any() schemas (never called).
-   * The manifest carries the real schemas as pre-serialized JSON Schema from the worker.
-   * This method patches those into the serialized cache so describe/CLI display them.
-   *
-   * @param orgName - Organization name
-   * @param manifestSchemas - Map of resourceId -> { contract, steps } with JSON Schema
-   */
-  patchManifestSchemas(
-    orgName: string,
-    manifestSchemas: Array<{
-      resourceId: string
-      type: 'workflow' | 'agent'
-      contract?: { inputSchema?: object; outputSchema?: object }
-      steps?: Array<{ id: string; inputSchema?: object; outputSchema?: object }>
-    }>
-  ): void {
-    const cache = this.serializedCache.get(orgName)
-    if (!cache) return
-
-    for (const entry of manifestSchemas) {
-      if (entry.type === 'workflow') {
-        const def = cache.definitions.workflows.get(entry.resourceId)
-        if (!def) continue
-
-        // Patch contract schemas
-        if (entry.contract?.inputSchema) def.contract.inputSchema = entry.contract.inputSchema
-        if (entry.contract?.outputSchema) def.contract.outputSchema = entry.contract.outputSchema
-
-        // Patch step schemas
-        if (entry.steps && def.steps) {
-          for (const stepPatch of entry.steps) {
-            const step = def.steps.find((s) => s.id === stepPatch.id)
-            if (!step) continue
-            if (stepPatch.inputSchema) step.inputSchema = stepPatch.inputSchema
-            if (stepPatch.outputSchema) step.outputSchema = stepPatch.outputSchema
-          }
-        }
-      } else if (entry.type === 'agent') {
-        const def = cache.definitions.agents.get(entry.resourceId)
-        if (!def) continue
-        if (entry.contract?.inputSchema) def.contract.inputSchema = entry.contract.inputSchema
-        if (entry.contract?.outputSchema) def.contract.outputSchema = entry.contract.outputSchema
-      }
-    }
-  }
-
-  /**
-   * Register built-in platform resources (static, local execution)
-   *
-   * Unlike registerOrganization(), these resources:
-   * - Do NOT have remote config (execute in-process, not in worker threads)
-   * - Are NOT removed by unregisterOrganization() (persist across redeployments)
-   * - Use reserved resource IDs that external deployments cannot claim
-   *
-   * @param orgName - Organization name
-   * @param org - Resource definitions with real handlers (not stubs)
-   */
-  registerStaticResources(orgName: string, org: DeploymentSpec): void {
-    // Filter out archived resources before any processing
-    org = filterArchived(org)
-
-    const incomingWorkflowIds = (org.workflows ?? []).map((w) => w.config.resourceId)
-    const incomingAgentIds = (org.agents ?? []).map((a) => a.config.resourceId)
-    const incomingIds = [...incomingWorkflowIds, ...incomingAgentIds]
-
-    // Check for duplicates within incoming resources
-    const seen = new Set<string>()
-    for (const id of incomingIds) {
-      if (seen.has(id)) {
-        throw new Error(`Duplicate resource ID '${id}' in static resources.`)
-      }
-      seen.add(id)
-    }
-
-    // Check for conflicts with existing resources in this org
-    const existingOrg = this.registry[orgName]
-    if (existingOrg) {
-      const existingWorkflowIds = new Set((existingOrg.workflows ?? []).map((w) => w.config.resourceId))
-      const existingAgentIds = new Set((existingOrg.agents ?? []).map((a) => a.config.resourceId))
-
-      for (const id of incomingIds) {
-        if (existingWorkflowIds.has(id) || existingAgentIds.has(id)) {
-          throw new Error(`Static resource '${id}' conflicts with existing resource in '${orgName}'.`)
-        }
-      }
-    }
-
-    // Merge into registry (no remote config = local execution path)
-    if (existingOrg) {
-      existingOrg.workflows = [...(existingOrg.workflows ?? []), ...(org.workflows ?? [])]
-      existingOrg.agents = [...(existingOrg.agents ?? []), ...(org.agents ?? [])]
-    } else {
-      this.registry[orgName] = org
-    }
-
-    // Rebuild serialized cache
-    this.serializedCache.set(orgName, serializeOrganization(this.registry[orgName]))
-  }
-
-  /**
-   * Unregister runtime-registered resources for an organization
-   *
-   * Removes only resources that were registered at runtime (via registerOrganization).
-   * Static resources loaded at startup are preserved. If the org still has static
-   * resources after removal, the serialization cache is rebuilt. If no resources
-   * remain, the org is fully removed from the registry.
-   * No-op if the org has no remote resources.
-   *
-   * @param orgName - Organization name to unregister remote resources from
-   */
-  unregisterOrganization(orgName: string): void {
-    // Find all remote resource keys for this org
-    const prefix = `${orgName}/`
-    const remoteIds = new Set<string>()
-    for (const key of this.remoteResources.keys()) {
-      if (key.startsWith(prefix)) {
-        remoteIds.add(key.slice(prefix.length))
-        this.remoteResources.delete(key)
-      }
-    }
-
-    // No-op if org had no remote resources
-    if (remoteIds.size === 0) return
-
-    const orgResources = this.registry[orgName]
-    if (!orgResources) return
-
-    // Remove remote resources from the org's arrays
-    orgResources.workflows = (orgResources.workflows ?? []).filter((w) => !remoteIds.has(w.config.resourceId))
-    orgResources.agents = (orgResources.agents ?? []).filter((a) => !remoteIds.has(a.config.resourceId))
-
-    // Remove deployment-owned metadata (triggers, integrations, checkpoints, external resources)
-    // These are always fully owned by the deployment — replaced on each deploy
-    orgResources.triggers = undefined
-    orgResources.integrations = undefined
-    orgResources.humanCheckpoints = undefined
-    orgResources.externalResources = undefined
-
-    // Remove relationship entries for remote resource IDs
-    if (orgResources.relationships) {
-      for (const id of remoteIds) {
-        delete orgResources.relationships[id]
-      }
-      if (Object.keys(orgResources.relationships).length === 0) {
-        delete orgResources.relationships
-      }
-    }
-
-    // If the org still has static resources, rebuild cache; otherwise fully remove
-    // (triggers, integrations, checkpoints, externalResources were cleared above)
-    const remaining = (orgResources.workflows?.length ?? 0) + (orgResources.agents?.length ?? 0)
-
-    if (remaining > 0) {
-      this.serializedCache.set(orgName, serializeOrganization(orgResources))
-    } else {
-      delete this.registry[orgName]
-      this.serializedCache.delete(orgName)
-    }
-  }
-
-  /**
-   * Get remote configuration for a specific resource.
-   *
-   * Returns RemoteOrgConfig for externally-deployed resources, SystemConfig for
-   * first-class platform resources, or null for static in-process resources.
-   * Used by the execution coordinator to determine the execution path.
-   *
-   * @param orgName - Organization name
-   * @param resourceId - Resource ID
-   * @returns Remote or System config, or null
-   */
-  getRemoteConfig(orgName: string, resourceId: string): RemoteOrgConfig | SystemConfig | null {
-    const key = `${orgName}/${resourceId}`
-    return this.remoteResources.get(key) ?? this.systemConfigs.get(key) ?? null
-  }
-
-  /**
-   * Register a System config for a first-class platform resource.
-   *
-   * Called at startup alongside registerStaticResources() so that
-   * getRemoteConfig('system', resourceId) returns truthy and the execution
-   * coordinator routes the resource through the worker-thread path.
-   *
-   * @param orgName - Organization name (typically 'system')
-   * @param resourceId - Resource ID
-   * @param config - SystemConfig with kind:'static' and moduleId
-   */
-  registerSystemConfig(orgName: string, resourceId: string, config: SystemConfig): void {
-    this.systemConfigs.set(`${orgName}/${resourceId}`, config)
-  }
-
-  /**
-   * Check if an organization has any remote (externally deployed) resources
-   *
-   * @param orgName - Organization name
-   * @returns true if the org has at least one runtime-registered resource
-   */
-  isRemote(orgName: string): boolean {
-    const prefix = `${orgName}/`
-    for (const key of this.remoteResources.keys()) {
-      if (key.startsWith(prefix)) return true
-    }
-    return false
-  }
-
-  /**
-   * Get the remote config for any resource in an organization.
-   * Used when the specific resource ID is unknown (e.g., to clean up a
-   * temp file before unregistering an org -- all resources share one config).
-   *
-   * @param orgName - Organization name
-   * @returns Remote config or null if org has no remote resources
-   */
-  getAnyRemoteConfig(orgName: string): RemoteOrgConfig | null {
-    const prefix = `${orgName}/`
-    for (const [key, config] of this.remoteResources) {
-      if (key.startsWith(prefix)) return config
-    }
-    return null
-  }
-
-  /**
-   * Get statistics about remotely-deployed resources
-   * Used by the health endpoint for platform-wide deployment visibility.
-   */
-  getRemoteStats(): { activeOrgs: number; totalResources: number } {
-    const orgs = new Set<string>()
-    for (const key of this.remoteResources.keys()) {
-      const orgName = key.split('/')[0]
-      orgs.add(orgName)
-    }
-    return {
-      activeOrgs: orgs.size,
-      totalResources: this.remoteResources.size
-    }
-  }
-
-  // ============================================================================
-  // Resource Manifest Accessors
-  // ============================================================================
-
-  /**
-   * Get triggers for an organization
-   * @param organizationName - Organization name
-   * @returns Array of trigger definitions (empty if none defined)
-   */
-  getTriggers(organizationName: string): TriggerDefinition[] {
-    return this.registry[organizationName]?.triggers ?? []
-  }
-
-  /**
-   * Get integrations for an organization
-   * @param organizationName - Organization name
-   * @returns Array of integration definitions (empty if none defined)
-   */
-  getIntegrations(organizationName: string): IntegrationDefinition[] {
-    return this.registry[organizationName]?.integrations ?? []
-  }
-
-  /**
-   * Get resource relationships for an organization
-   * @param organizationName - Organization name
-   * @returns Resource relationships map (undefined if none defined)
-   */
-  getRelationships(organizationName: string): ResourceRelationships | undefined {
-    return this.registry[organizationName]?.relationships
-  }
-
-  /**
-   * Get a specific trigger by ID
-   * @param organizationName - Organization name
-   * @param triggerId - Trigger ID
-   * @returns Trigger definition or null if not found
-   */
-  getTrigger(organizationName: string, triggerId: string): TriggerDefinition | null {
-    const triggers = this.getTriggers(organizationName)
-    return triggers.find((t) => t.resourceId === triggerId) ?? null
-  }
-
-  /**
-   * Get a specific integration by ID
-   * @param organizationName - Organization name
-   * @param integrationId - Integration ID
-   * @returns Integration definition or null if not found
-   */
-  getIntegration(organizationName: string, integrationId: string): IntegrationDefinition | null {
-    const integrations = this.getIntegrations(organizationName)
-    return integrations.find((i) => i.resourceId === integrationId) ?? null
-  }
-
-  /**
-   * Get external resources for an organization
-   * @param organizationName - Organization name
-   * @returns Array of external resource definitions (empty if none defined)
-   */
-  getExternalResources(organizationName: string): ExternalResourceDefinition[] {
-    return this.registry[organizationName]?.externalResources ?? []
-  }
-
-  /**
-   * Get a specific external resource by ID
-   * @param organizationName - Organization name
-   * @param externalId - External resource ID
-   * @returns External resource definition or null if not found
-   */
-  getExternalResource(organizationName: string, externalId: string): ExternalResourceDefinition | null {
-    const externalResources = this.getExternalResources(organizationName)
-    return externalResources.find((e) => e.resourceId === externalId) ?? null
-  }
-
-  /**
-   * Get human checkpoints for an organization
-   * @param organizationName - Organization name
-   * @returns Array of human checkpoint definitions (empty if none defined)
-   */
-  getHumanCheckpoints(organizationName: string): HumanCheckpointDefinition[] {
-    return this.registry[organizationName]?.humanCheckpoints ?? []
-  }
-
-  /**
-   * Get a specific human checkpoint by ID
-   * @param organizationName - Organization name
-   * @param humanCheckpointId - Human checkpoint ID
-   * @returns Human checkpoint definition or null if not found
-   */
-  getHumanCheckpoint(organizationName: string, humanCheckpointId: string): HumanCheckpointDefinition | null {
-    const humanCheckpoints = this.getHumanCheckpoints(organizationName)
-    return humanCheckpoints.find((hc) => hc.resourceId === humanCheckpointId) ?? null
-  }
-
-  // ============================================================================
-  // Serialized Data Access (Pre-computed at Startup)
-  // ============================================================================
-
-  /**
-   * Get serialized resource definition (instant lookup)
-   * Use for API responses - returns pre-computed JSON-safe structure
-   *
-   * @param organizationName - Organization name
-   * @param resourceId - Resource ID
-   * @returns Serialized definition or null if not found
-   */
-  getSerializedDefinition(
-    organizationName: string,
-    resourceId: string
-  ): SerializedAgentDefinition | SerializedWorkflowDefinition | null {
-    const cache = this.serializedCache.get(organizationName)
-    if (!cache) return null
-
-    return cache.definitions.agents.get(resourceId) ?? cache.definitions.workflows.get(resourceId) ?? null
-  }
-
-  /**
-   * Get resource list for organization (instant lookup)
-   * Use for /resources endpoint - returns pre-computed ResourceDefinition array
-   *
-   * @param organizationName - Organization name
-   * @returns Resource list with workflows, agents, and total count
-   */
-  getResourceList(organizationName: string): {
-    workflows: ResourceDefinition[]
-    agents: ResourceDefinition[]
-    total: number
-  } {
-    const cache = this.serializedCache.get(organizationName)
-    if (!cache) {
-      return { workflows: [], agents: [], total: 0 }
-    }
-    return cache.resources
-  }
-
-  /**
-   * Get Command View data for organization (instant lookup)
-   * Use for /command-view endpoint - returns complete graph data
-   *
-   * @param organizationName - Organization name
-   * @returns Command View data with nodes and edges
-   */
-  getCommandViewData(organizationName: string): CommandViewData {
-    const cache = this.serializedCache.get(organizationName)
-    if (!cache) {
-      return {
-        workflows: [],
-        agents: [],
-        triggers: [],
-        integrations: [],
-        externalResources: [],
-        humanCheckpoints: [],
-        edges: []
-      }
-    }
-    return cache.commandView
-  }
-}
+  organizationModel?: Partial<
+    Pick<
+      OrganizationModel,
+      'systems' | 'resources' | 'ontology' | 'topology' | 'roles' | 'policies' | 'entities' | 'actions'
+    >
+  >
+  /** Workflow definitions */
+  workflows?: WorkflowDefinition[]
+  /** Agent definitions */
+  agents?: AgentDefinition[]
+
+  // Resource Manifest fields (optional for backwards compatibility)
+  /** Trigger definitions - entry points that initiate executions */
+  triggers?: TriggerDefinition[]
+  /** Integration definitions - external service connections */
+  integrations?: IntegrationDefinition[]
+  /** Explicit relationship declarations between resources */
+  relationships?: ResourceRelationships
+  /** External automation resources (n8n, Make, Zapier, etc.) */
+  externalResources?: ExternalResourceDefinition[]
+  /** Human checkpoint definitions - human decision points in automation */
+  humanCheckpoints?: HumanCheckpointDefinition[]
+}
+
+/**
+ * Organization Registry type
+ */
+export type OrganizationRegistry = Record<string, DeploymentSpec>
+
+export class ResourceRegistry {
+  /**
+   * Pre-serialized organization data cache
+   * Computed once at construction for static orgs, updated incrementally for runtime orgs
+   */
+  private serializedCache: Map<string, SerializedOrganizationData>
+
+  /**
+   * Per-resource remote configuration (external deployments)
+   * Key: "orgName/resourceId", Value: RemoteOrgConfig for that resource.
+   * Tracks which individual resources were added at runtime via deploy pipeline.
+   * Static and remote resources coexist in the same org.
+   */
+  private remoteResources = new Map<string, RemoteOrgConfig>()
+
+  /**
+   * System configs for first-class platform resources.
+   * Key: "orgName/resourceId", Value: SystemConfig.
+   * Registered at startup alongside registerStaticResources().
+   */
+  private systemConfigs = new Map<string, SystemConfig>()
+
+  constructor(private registry: OrganizationRegistry) {
+    this.validateRegistry()
+    this.validateRelationships()
+    this.serializedCache = serializeAllOrganizations(registry)
+  }
+
+  /**
+   * Validates registry on construction
+   * - Checks for duplicate resourceIds within organizations
+   * - Validates model configurations against constraints
+   * - Validates ExecutionInterface matches inputSchema
+   * @throws Error if validation fails
+   */
+  private validateRegistry(): void {
+    for (const [orgName, resources] of Object.entries(this.registry)) {
+      validateDeploymentSpec(orgName, resources)
+    }
+  }
+
+  /**
+   * Validates relationship declarations reference valid resources
+   * Runs at API server startup - fails fast in development
+   * @throws Error if validation fails
+   */
+  private validateRelationships(): void {
+    for (const [orgName, resources] of Object.entries(this.registry)) {
+      validateRelationships(orgName, resources)
+    }
+  }
+
+  /**
+   * Get the remote resource IDs currently registered for an organization.
+   * Used to validate redeployments against the post-swap state before any
+   * live registry mutation occurs.
+   */
+  private getRemoteResourceIds(orgName: string): Set<string> {
+    const prefix = `${orgName}/`
+    const remoteIds = new Set<string>()
+    for (const key of this.remoteResources.keys()) {
+      if (key.startsWith(prefix)) {
+        remoteIds.add(key.slice(prefix.length))
+      }
+    }
+    return remoteIds
+  }
+
+  /**
+   * Build the "static + surviving" baseline for registration validation.
+   * On redeploy, this strips the currently remote-owned resources and
+   * deployment-owned metadata so validation reflects the state after swap.
+   */
+  private buildRegistrationBase(orgName: string): DeploymentSpec | undefined {
+    const existingOrg = this.registry[orgName]
+    if (!existingOrg) return undefined
+
+    const remoteIds = this.getRemoteResourceIds(orgName)
+    if (remoteIds.size === 0) return existingOrg
+
+    const relationships = existingOrg.relationships
+      ? Object.fromEntries(
+          Object.entries(existingOrg.relationships).filter(([resourceId]) => !remoteIds.has(resourceId))
+        )
+      : undefined
+
+    return {
+      ...existingOrg,
+      version: existingOrg.version ?? '0.0.0',
+      workflows: (existingOrg.workflows ?? []).filter((w) => !remoteIds.has(w.config.resourceId)),
+      agents: (existingOrg.agents ?? []).filter((a) => !remoteIds.has(a.config.resourceId)),
+      triggers: undefined,
+      integrations: undefined,
+      humanCheckpoints: undefined,
+      externalResources: undefined,
+      relationships: relationships && Object.keys(relationships).length > 0 ? relationships : undefined
+    }
+  }
+
+  /**
+   * Validate the registry state that would exist after registration succeeds.
+   * This runs before any live mutation so invalid redeploys preserve the
+   * currently active remote resources.
+   */
+  private validateRegistrationCandidate(orgName: string, incoming: DeploymentSpec): void {
+    const base = this.buildRegistrationBase(orgName)
+
+    const candidate: DeploymentSpec = base
+      ? {
+          ...base,
+          version: incoming.version ?? base.version ?? '0.0.0',
+          workflows: [...(base.workflows ?? []), ...(incoming.workflows ?? [])],
+          agents: [...(base.agents ?? []), ...(incoming.agents ?? [])],
+          triggers: incoming.triggers,
+          integrations: incoming.integrations,
+          humanCheckpoints: incoming.humanCheckpoints,
+          externalResources: incoming.externalResources,
+          relationships: incoming.relationships
+            ? {
+                ...(base.relationships ?? {}),
+                ...incoming.relationships
+              }
+            : base.relationships
+        }
+      : {
+          ...incoming,
+          version: incoming.version ?? '0.0.0'
+        }
+
+    validateDeploymentSpec(orgName, candidate)
+    validateRelationships(orgName, candidate)
+  }
+
+  /**
+   * Get a resource definition by ID
+   * Returns full definition (WorkflowDefinition or AgentDefinition)
+   * Check definition.config.type to determine if it's a workflow or agent
+   */
+  getResourceDefinition(organizationName: string, resourceId: string): WorkflowDefinition | AgentDefinition | null {
+    const orgResources = this.registry[organizationName]
+    if (!orgResources) return null
+
+    // Check workflows first
+    const workflow = orgResources.workflows?.find((w) => w.config.resourceId === resourceId)
+    if (workflow) return workflow
+
+    // Check agents
+    const agent = orgResources.agents?.find((a) => a.config.resourceId === resourceId)
+    if (agent) return agent
+
+    return null
+  }
+
+  /**
+   * List all resources for an organization
+   * Returns ResourceDefinition metadata (not full definitions)
+   *
+   * All resources are returned regardless of server environment.
+   * Pass an explicit `environment` filter to get only 'dev' or 'prod' resources.
+   */
+  listResourcesForOrganization(organizationName: string, environment?: ResourceStatus): ResourceList {
+    const orgResources = this.registry[organizationName]
+    if (!orgResources) {
+      return {
+        workflows: [],
+        agents: [],
+        total: 0,
+        organizationName,
+        environment
+      }
+    }
+
+    const resourcesById = new Map(Object.values(orgResources.organizationModel?.resources ?? {}).map((r) => [r.id, r]))
+    // Build a path-keyed map that includes nested systems (DFS via listAllSystems).
+    // resource.systemPath is the dot-separated system path used as the lookup key.
+    const omSystems = orgResources.organizationModel?.systems
+    const systemsByPath = new Map<string, SystemEntry>(
+      omSystems
+        ? listAllSystems({ systems: omSystems } as OrganizationModel).map(({ path, system }) => [path, system])
+        : []
+    )
+    const getGovernanceMetadata = (
+      resourceId: string,
+      descriptor: ResourceEntry | undefined
+    ): Pick<ResourceDefinition, 'systemPath' | 'system' | 'governanceStatus'> => {
+      const resource = descriptor ?? resourcesById.get(resourceId)
+      if (!resource) return {}
+
+      return {
+        systemPath: resource.systemPath,
+        system: summarizeSystem(systemsByPath.get(resource.systemPath)),
+        governanceStatus: resource.status
+      }
+    }
+
+    // Map workflows to ResourceDefinition metadata and filter by environment
+    const workflows: ResourceDefinition[] = (orgResources.workflows || [])
+      .map((def) => ({
+        resourceId: def.config.resourceId,
+        name: def.config.name,
+        description: def.config.description,
+        version: def.config.version,
+        type: def.config.type,
+        status: def.config.status,
+        links: def.config.links,
+        category: def.config.category,
+        origin: this.remoteResources.has(`${organizationName}/${def.config.resourceId}`)
+          ? ('remote' as const)
+          : ('local' as const),
+        ...getGovernanceMetadata(def.config.resourceId, def.config.resource)
+      }))
+      .filter((resource) => !environment || resource.status === environment)
+
+    // Map agents to ResourceDefinition metadata and filter by environment
+    const agents: ResourceDefinition[] = (orgResources.agents || [])
+      .map((def) => ({
+        resourceId: def.config.resourceId,
+        name: def.config.name,
+        description: def.config.description,
+        version: def.config.version,
+        type: def.config.type,
+        status: def.config.status,
+        links: def.config.links,
+        category: def.config.category,
+        sessionCapable: def.config.sessionCapable ?? false,
+        origin: this.remoteResources.has(`${organizationName}/${def.config.resourceId}`)
+          ? ('remote' as const)
+          : ('local' as const),
+        ...getGovernanceMetadata(def.config.resourceId, def.config.resource)
+      }))
+      .filter((resource) => !environment || resource.status === environment)
+
+    return {
+      workflows,
+      agents,
+      total: workflows.length + agents.length,
+      organizationName,
+      environment
+    }
+  }
+
+  /**
+   * List all resources from all organizations
+   * NOTE: For debugging only - returns raw registry data
+   */
+  listAllResources(): OrganizationRegistry {
+    return this.registry
+  }
+
+  // ============================================================================
+  // Runtime Organization Registration (External Deployments)
+  // ============================================================================
+
+  /**
+   * Register external resources at runtime
+   *
+   * Called during deploy pipeline when an external developer deploys their bundle.
+   * Merges the incoming stub definitions into the org's registry and stores
+   * per-resource remote config for worker thread execution branching.
+   *
+   * Static and remote resources coexist in the same org. If the org already
+   * has static resources, the incoming remote resources are merged alongside them.
+   * If redeploying (some resources already registered as remote for this org),
+   * the previous remote resources are unregistered first.
+   *
+   * @param orgName - Organization name (used as registry key)
+   * @param org - Stub resource definitions (workflows/agents with placeholder handlers)
+   * @param remote - Remote configuration (bundle path, deployment ID, env vars)
+   * @throws Error if incoming resourceId conflicts with a static resource
+   * @throws Error if incoming deployment contains duplicate resourceIds
+   */
+  registerOrganization(orgName: string, org: DeploymentSpec, remote: RemoteOrgConfig): void {
+    // Filter out archived resources before any processing
+    org = filterArchived(org)
+
+    // Collect all incoming resource IDs for conflict checking
+    const incomingWorkflowIds = (org.workflows ?? []).map((w) => w.config.resourceId)
+    const incomingAgentIds = (org.agents ?? []).map((a) => a.config.resourceId)
+    const incomingIds = [...incomingWorkflowIds, ...incomingAgentIds]
+
+    // Check for intra-deployment duplicates
+    const seen = new Set<string>()
+    for (const id of incomingIds) {
+      if (seen.has(id)) {
+        throw new Error(`Duplicate resource ID '${id}' in deployment. Each resource must have a unique ID.`)
+      }
+      seen.add(id)
+    }
+
+    // Check for reserved resource IDs (cannot be claimed by external deployments)
+    for (const id of incomingIds) {
+      if (isReservedResourceId(id)) {
+        throw new Error(
+          `Resource ID '${id}' is reserved for platform use. External deployments cannot use reserved resource IDs.`
+        )
+      }
+    }
+
+    // Check for conflicts against the static/surviving org state.
+    // On redeploy, current remote resources are excluded so a deployment can
+    // legitimately replace its own resource IDs without colliding with itself.
+    const validationBase = this.buildRegistrationBase(orgName)
+    if (validationBase) {
+      const staticWorkflowIds = new Set((validationBase.workflows ?? []).map((w) => w.config.resourceId))
+      const staticAgentIds = new Set((validationBase.agents ?? []).map((a) => a.config.resourceId))
+
+      for (const id of incomingIds) {
+        if (staticWorkflowIds.has(id) || staticAgentIds.has(id)) {
+          throw new Error(
+            `Resource '${id}' already exists in '${orgName}' as an internal resource. External deployments cannot override internal resources.`
+          )
+        }
+      }
+    }
+
+    // Validate the merged deployment shape before mutating the live registry.
+    // This keeps the current deployment intact if a redeploy introduces
+    // invalid relationships or other registry-level validation failures.
+    this.validateRegistrationCandidate(orgName, org)
+
+    // If redeploying (some resources already registered as remote for this org), clean up only
+    // after validation succeeds so a failed redeploy preserves the current remote resources.
+    if (this.isRemote(orgName)) {
+      this.unregisterOrganization(orgName)
+    }
+
+    // Merge incoming resources into the org (or create new org entry)
+    const existingOrg = this.registry[orgName]
+    if (existingOrg) {
+      existingOrg.workflows = [...(existingOrg.workflows ?? []), ...(org.workflows ?? [])]
+      existingOrg.agents = [...(existingOrg.agents ?? []), ...(org.agents ?? [])]
+      // Deployment-owned metadata: replace entirely (unregister cleared these)
+      existingOrg.triggers = org.triggers
+      existingOrg.integrations = org.integrations
+      existingOrg.humanCheckpoints = org.humanCheckpoints
+      existingOrg.externalResources = org.externalResources
+      if (org.relationships) {
+        existingOrg.relationships = {
+          ...(existingOrg.relationships ?? {}),
+          ...org.relationships
+        }
+      }
+    } else {
+      this.registry[orgName] = org
+    }
+
+    // Populate per-resource remote config entries
+    for (const id of incomingIds) {
+      this.remoteResources.set(`${orgName}/${id}`, remote)
+    }
+
+    // Rebuild serialized cache for the full merged org
+    this.serializedCache.set(orgName, serializeOrganization(this.registry[orgName]))
+  }
+
+  /**
+   * Patch serialized cache with pre-serialized schemas from an external manifest.
+   *
+   * External deployments use stub definitions with z.any() schemas (never called).
+   * The manifest carries the real schemas as pre-serialized JSON Schema from the worker.
+   * This method patches those into the serialized cache so describe/CLI display them.
+   *
+   * @param orgName - Organization name
+   * @param manifestSchemas - Map of resourceId -> { contract, steps } with JSON Schema
+   */
+  patchManifestSchemas(
+    orgName: string,
+    manifestSchemas: Array<{
+      resourceId: string
+      type: 'workflow' | 'agent'
+      contract?: { inputSchema?: object; outputSchema?: object }
+      steps?: Array<{ id: string; inputSchema?: object; outputSchema?: object }>
+    }>
+  ): void {
+    const cache = this.serializedCache.get(orgName)
+    if (!cache) return
+
+    for (const entry of manifestSchemas) {
+      if (entry.type === 'workflow') {
+        const def = cache.definitions.workflows.get(entry.resourceId)
+        if (!def) continue
+
+        // Patch contract schemas
+        if (entry.contract?.inputSchema) def.contract.inputSchema = entry.contract.inputSchema
+        if (entry.contract?.outputSchema) def.contract.outputSchema = entry.contract.outputSchema
+
+        // Patch step schemas
+        if (entry.steps && def.steps) {
+          for (const stepPatch of entry.steps) {
+            const step = def.steps.find((s) => s.id === stepPatch.id)
+            if (!step) continue
+            if (stepPatch.inputSchema) step.inputSchema = stepPatch.inputSchema
+            if (stepPatch.outputSchema) step.outputSchema = stepPatch.outputSchema
+          }
+        }
+      } else if (entry.type === 'agent') {
+        const def = cache.definitions.agents.get(entry.resourceId)
+        if (!def) continue
+        if (entry.contract?.inputSchema) def.contract.inputSchema = entry.contract.inputSchema
+        if (entry.contract?.outputSchema) def.contract.outputSchema = entry.contract.outputSchema
+      }
+    }
+  }
+
+  /**
+   * Register built-in platform resources (static, local execution)
+   *
+   * Unlike registerOrganization(), these resources:
+   * - Do NOT have remote config (execute in-process, not in worker threads)
+   * - Are NOT removed by unregisterOrganization() (persist across redeployments)
+   * - Use reserved resource IDs that external deployments cannot claim
+   *
+   * @param orgName - Organization name
+   * @param org - Resource definitions with real handlers (not stubs)
+   */
+  registerStaticResources(orgName: string, org: DeploymentSpec): void {
+    // Filter out archived resources before any processing
+    org = filterArchived(org)
+
+    const incomingWorkflowIds = (org.workflows ?? []).map((w) => w.config.resourceId)
+    const incomingAgentIds = (org.agents ?? []).map((a) => a.config.resourceId)
+    const incomingIds = [...incomingWorkflowIds, ...incomingAgentIds]
+
+    // Check for duplicates within incoming resources
+    const seen = new Set<string>()
+    for (const id of incomingIds) {
+      if (seen.has(id)) {
+        throw new Error(`Duplicate resource ID '${id}' in static resources.`)
+      }
+      seen.add(id)
+    }
+
+    // Check for conflicts with existing resources in this org
+    const existingOrg = this.registry[orgName]
+    if (existingOrg) {
+      const existingWorkflowIds = new Set((existingOrg.workflows ?? []).map((w) => w.config.resourceId))
+      const existingAgentIds = new Set((existingOrg.agents ?? []).map((a) => a.config.resourceId))
+
+      for (const id of incomingIds) {
+        if (existingWorkflowIds.has(id) || existingAgentIds.has(id)) {
+          throw new Error(`Static resource '${id}' conflicts with existing resource in '${orgName}'.`)
+        }
+      }
+    }
+
+    // Merge into registry (no remote config = local execution path)
+    if (existingOrg) {
+      existingOrg.workflows = [...(existingOrg.workflows ?? []), ...(org.workflows ?? [])]
+      existingOrg.agents = [...(existingOrg.agents ?? []), ...(org.agents ?? [])]
+    } else {
+      this.registry[orgName] = org
+    }
+
+    // Rebuild serialized cache
+    this.serializedCache.set(orgName, serializeOrganization(this.registry[orgName]))
+  }
+
+  /**
+   * Unregister runtime-registered resources for an organization
+   *
+   * Removes only resources that were registered at runtime (via registerOrganization).
+   * Static resources loaded at startup are preserved. If the org still has static
+   * resources after removal, the serialization cache is rebuilt. If no resources
+   * remain, the org is fully removed from the registry.
+   * No-op if the org has no remote resources.
+   *
+   * @param orgName - Organization name to unregister remote resources from
+   */
+  unregisterOrganization(orgName: string): void {
+    // Find all remote resource keys for this org
+    const prefix = `${orgName}/`
+    const remoteIds = new Set<string>()
+    for (const key of this.remoteResources.keys()) {
+      if (key.startsWith(prefix)) {
+        remoteIds.add(key.slice(prefix.length))
+        this.remoteResources.delete(key)
+      }
+    }
+
+    // No-op if org had no remote resources
+    if (remoteIds.size === 0) return
+
+    const orgResources = this.registry[orgName]
+    if (!orgResources) return
+
+    // Remove remote resources from the org's arrays
+    orgResources.workflows = (orgResources.workflows ?? []).filter((w) => !remoteIds.has(w.config.resourceId))
+    orgResources.agents = (orgResources.agents ?? []).filter((a) => !remoteIds.has(a.config.resourceId))
+
+    // Remove deployment-owned metadata (triggers, integrations, checkpoints, external resources)
+    // These are always fully owned by the deployment — replaced on each deploy
+    orgResources.triggers = undefined
+    orgResources.integrations = undefined
+    orgResources.humanCheckpoints = undefined
+    orgResources.externalResources = undefined
+
+    // Remove relationship entries for remote resource IDs
+    if (orgResources.relationships) {
+      for (const id of remoteIds) {
+        delete orgResources.relationships[id]
+      }
+      if (Object.keys(orgResources.relationships).length === 0) {
+        delete orgResources.relationships
+      }
+    }
+
+    // If the org still has static resources, rebuild cache; otherwise fully remove
+    // (triggers, integrations, checkpoints, externalResources were cleared above)
+    const remaining = (orgResources.workflows?.length ?? 0) + (orgResources.agents?.length ?? 0)
+
+    if (remaining > 0) {
+      this.serializedCache.set(orgName, serializeOrganization(orgResources))
+    } else {
+      delete this.registry[orgName]
+      this.serializedCache.delete(orgName)
+    }
+  }
+
+  /**
+   * Get remote configuration for a specific resource.
+   *
+   * Returns RemoteOrgConfig for externally-deployed resources, SystemConfig for
+   * first-class platform resources, or null for static in-process resources.
+   * Used by the execution coordinator to determine the execution path.
+   *
+   * @param orgName - Organization name
+   * @param resourceId - Resource ID
+   * @returns Remote or System config, or null
+   */
+  getRemoteConfig(orgName: string, resourceId: string): RemoteOrgConfig | SystemConfig | null {
+    const key = `${orgName}/${resourceId}`
+    return this.remoteResources.get(key) ?? this.systemConfigs.get(key) ?? null
+  }
+
+  /**
+   * Register a System config for a first-class platform resource.
+   *
+   * Called at startup alongside registerStaticResources() so that
+   * getRemoteConfig('system', resourceId) returns truthy and the execution
+   * coordinator routes the resource through the worker-thread path.
+   *
+   * @param orgName - Organization name (typically 'system')
+   * @param resourceId - Resource ID
+   * @param config - SystemConfig with kind:'static' and moduleId
+   */
+  registerSystemConfig(orgName: string, resourceId: string, config: SystemConfig): void {
+    this.systemConfigs.set(`${orgName}/${resourceId}`, config)
+  }
+
+  /**
+   * Check if an organization has any remote (externally deployed) resources
+   *
+   * @param orgName - Organization name
+   * @returns true if the org has at least one runtime-registered resource
+   */
+  isRemote(orgName: string): boolean {
+    const prefix = `${orgName}/`
+    for (const key of this.remoteResources.keys()) {
+      if (key.startsWith(prefix)) return true
+    }
+    return false
+  }
+
+  /**
+   * Get the remote config for any resource in an organization.
+   * Used when the specific resource ID is unknown (e.g., to clean up a
+   * temp file before unregistering an org -- all resources share one config).
+   *
+   * @param orgName - Organization name
+   * @returns Remote config or null if org has no remote resources
+   */
+  getAnyRemoteConfig(orgName: string): RemoteOrgConfig | null {
+    const prefix = `${orgName}/`
+    for (const [key, config] of this.remoteResources) {
+      if (key.startsWith(prefix)) return config
+    }
+    return null
+  }
+
+  /**
+   * Get statistics about remotely-deployed resources
+   * Used by the health endpoint for platform-wide deployment visibility.
+   */
+  getRemoteStats(): { activeOrgs: number; totalResources: number } {
+    const orgs = new Set<string>()
+    for (const key of this.remoteResources.keys()) {
+      const orgName = key.split('/')[0]
+      orgs.add(orgName)
+    }
+    return {
+      activeOrgs: orgs.size,
+      totalResources: this.remoteResources.size
+    }
+  }
+
+  // ============================================================================
+  // Resource Manifest Accessors
+  // ============================================================================
+
+  /**
+   * Get triggers for an organization
+   * @param organizationName - Organization name
+   * @returns Array of trigger definitions (empty if none defined)
+   */
+  getTriggers(organizationName: string): TriggerDefinition[] {
+    return this.registry[organizationName]?.triggers ?? []
+  }
+
+  /**
+   * Get integrations for an organization
+   * @param organizationName - Organization name
+   * @returns Array of integration definitions (empty if none defined)
+   */
+  getIntegrations(organizationName: string): IntegrationDefinition[] {
+    return this.registry[organizationName]?.integrations ?? []
+  }
+
+  /**
+   * Get resource relationships for an organization
+   * @param organizationName - Organization name
+   * @returns Resource relationships map (undefined if none defined)
+   */
+  getRelationships(organizationName: string): ResourceRelationships | undefined {
+    return this.registry[organizationName]?.relationships
+  }
+
+  /**
+   * Get a specific trigger by ID
+   * @param organizationName - Organization name
+   * @param triggerId - Trigger ID
+   * @returns Trigger definition or null if not found
+   */
+  getTrigger(organizationName: string, triggerId: string): TriggerDefinition | null {
+    const triggers = this.getTriggers(organizationName)
+    return triggers.find((t) => t.resourceId === triggerId) ?? null
+  }
+
+  /**
+   * Get a specific integration by ID
+   * @param organizationName - Organization name
+   * @param integrationId - Integration ID
+   * @returns Integration definition or null if not found
+   */
+  getIntegration(organizationName: string, integrationId: string): IntegrationDefinition | null {
+    const integrations = this.getIntegrations(organizationName)
+    return integrations.find((i) => i.resourceId === integrationId) ?? null
+  }
+
+  /**
+   * Get external resources for an organization
+   * @param organizationName - Organization name
+   * @returns Array of external resource definitions (empty if none defined)
+   */
+  getExternalResources(organizationName: string): ExternalResourceDefinition[] {
+    return this.registry[organizationName]?.externalResources ?? []
+  }
+
+  /**
+   * Get a specific external resource by ID
+   * @param organizationName - Organization name
+   * @param externalId - External resource ID
+   * @returns External resource definition or null if not found
+   */
+  getExternalResource(organizationName: string, externalId: string): ExternalResourceDefinition | null {
+    const externalResources = this.getExternalResources(organizationName)
+    return externalResources.find((e) => e.resourceId === externalId) ?? null
+  }
+
+  /**
+   * Get human checkpoints for an organization
+   * @param organizationName - Organization name
+   * @returns Array of human checkpoint definitions (empty if none defined)
+   */
+  getHumanCheckpoints(organizationName: string): HumanCheckpointDefinition[] {
+    return this.registry[organizationName]?.humanCheckpoints ?? []
+  }
+
+  /**
+   * Get a specific human checkpoint by ID
+   * @param organizationName - Organization name
+   * @param humanCheckpointId - Human checkpoint ID
+   * @returns Human checkpoint definition or null if not found
+   */
+  getHumanCheckpoint(organizationName: string, humanCheckpointId: string): HumanCheckpointDefinition | null {
+    const humanCheckpoints = this.getHumanCheckpoints(organizationName)
+    return humanCheckpoints.find((hc) => hc.resourceId === humanCheckpointId) ?? null
+  }
+
+  // ============================================================================
+  // Serialized Data Access (Pre-computed at Startup)
+  // ============================================================================
+
+  /**
+   * Get serialized resource definition (instant lookup)
+   * Use for API responses - returns pre-computed JSON-safe structure
+   *
+   * @param organizationName - Organization name
+   * @param resourceId - Resource ID
+   * @returns Serialized definition or null if not found
+   */
+  getSerializedDefinition(
+    organizationName: string,
+    resourceId: string
+  ): SerializedAgentDefinition | SerializedWorkflowDefinition | null {
+    const cache = this.serializedCache.get(organizationName)
+    if (!cache) return null
+
+    return cache.definitions.agents.get(resourceId) ?? cache.definitions.workflows.get(resourceId) ?? null
+  }
+
+  /**
+   * Get resource list for organization (instant lookup)
+   * Use for /resources endpoint - returns pre-computed ResourceDefinition array
+   *
+   * @param organizationName - Organization name
+   * @returns Resource list with workflows, agents, and total count
+   */
+  getResourceList(organizationName: string): {
+    workflows: ResourceDefinition[]
+    agents: ResourceDefinition[]
+    total: number
+  } {
+    const cache = this.serializedCache.get(organizationName)
+    if (!cache) {
+      return { workflows: [], agents: [], total: 0 }
+    }
+    return cache.resources
+  }
+
+  /**
+   * Get Command View data for organization (instant lookup)
+   * Use for /command-view endpoint - returns complete graph data
+   *
+   * @param organizationName - Organization name
+   * @returns Command View data with nodes and edges
+   */
+  getCommandViewData(organizationName: string): CommandViewData {
+    const cache = this.serializedCache.get(organizationName)
+    if (!cache) {
+      return {
+        workflows: [],
+        agents: [],
+        triggers: [],
+        integrations: [],
+        externalResources: [],
+        humanCheckpoints: [],
+        edges: []
+      }
+    }
+    return cache.commandView
+  }
+}