@duytransipher/gitnexus 1.4.6-sipher.0

package/dist/cli/tool.js

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+/**
+ * Direct CLI Tool Commands
+ *
+ * Exposes GitNexus tools (query, context, impact, cypher) as direct CLI commands.
+ * Bypasses MCP entirely — invokes LocalBackend directly for minimal overhead.
+ *
+ * Usage:
+ *   gitnexus query "authentication flow"
+ *   gitnexus context --name "validateUser"
+ *   gitnexus impact --target "AuthService" --direction upstream
+ *   gitnexus cypher "MATCH (n:Function) RETURN n.name LIMIT 10"
+ *   gitnexus unreal-find-refs "ALyraWeaponSpawner::GetPickupInstigator"
+ *
+ * Note: Output goes to stdout via fs.writeSync(fd 1), bypassing LadybugDB's
+ * native module which captures the Node.js process.stdout stream during init.
+ * See the output() function for details (#324).
+ */
+import { writeSync } from 'node:fs';
+import { LocalBackend } from '../mcp/local/local-backend.js';
+let _backend = null;
+async function getBackend() {
+    if (_backend)
+        return _backend;
+    _backend = new LocalBackend();
+    const ok = await _backend.init();
+    if (!ok) {
+        console.error('GitNexus: No indexed repositories found. Run: gitnexus analyze');
+        process.exit(1);
+    }
+    return _backend;
+}
+/**
+ * Write tool output to stdout using low-level fd write.
+ *
+ * LadybugDB's native module captures Node.js process.stdout during init,
+ * but the underlying OS file descriptor 1 (stdout) remains intact.
+ * By using fs.writeSync(1, ...) we bypass the Node.js stream layer
+ * and write directly to the real stdout fd (#324).
+ *
+ * Falls back to stderr if the fd write fails (e.g., broken pipe).
+ */
+function output(data) {
+    const text = typeof data === 'string' ? data : JSON.stringify(data, null, 2);
+    try {
+        writeSync(1, text + '\n');
+    }
+    catch (err) {
+        if (err?.code === 'EPIPE') {
+            // Consumer closed the pipe (e.g., `gitnexus cypher ... | head -1`)
+            // Exit cleanly per Unix convention
+            process.exit(0);
+        }
+        // Fallback: stderr (previous behavior, works on all platforms)
+        process.stderr.write(text + '\n');
+    }
+}
+export async function queryCommand(queryText, options) {
+    if (!queryText?.trim()) {
+        console.error('Usage: gitnexus query <search_query>');
+        process.exit(1);
+    }
+    const backend = await getBackend();
+    const result = await backend.callTool('query', {
+        query: queryText,
+        task_context: options?.context,
+        goal: options?.goal,
+        limit: options?.limit ? parseInt(options.limit) : undefined,
+        include_content: options?.content ?? false,
+        repo: options?.repo,
+    });
+    output(result);
+}
+export async function contextCommand(name, options) {
+    if (!name?.trim() && !options?.uid) {
+        console.error('Usage: gitnexus context <symbol_name> [--uid <uid>] [--file <path>]');
+        process.exit(1);
+    }
+    const backend = await getBackend();
+    const result = await backend.callTool('context', {
+        name: name || undefined,
+        uid: options?.uid,
+        file_path: options?.file,
+        include_content: options?.content ?? false,
+        repo: options?.repo,
+    });
+    output(result);
+}
+export async function impactCommand(target, options) {
+    if (!target?.trim()) {
+        console.error('Usage: gitnexus impact <symbol_name> [--direction upstream|downstream]');
+        process.exit(1);
+    }
+    try {
+        const backend = await getBackend();
+        const result = await backend.callTool('impact', {
+            target,
+            direction: options?.direction || 'upstream',
+            maxDepth: options?.depth ? parseInt(options.depth, 10) : undefined,
+            includeTests: options?.includeTests ?? false,
+            repo: options?.repo,
+        });
+        output(result);
+    }
+    catch (err) {
+        // Belt-and-suspenders: catch infrastructure failures (getBackend, callTool transport)
+        // The backend's impact() already returns structured errors for graph query failures
+        output({
+            error: (err instanceof Error ? err.message : String(err)) || 'Impact analysis failed unexpectedly',
+            target: { name: target },
+            direction: options?.direction || 'upstream',
+            suggestion: 'Try reducing --depth or using gitnexus context <symbol> as a fallback',
+        });
+        process.exit(1);
+    }
+}
+export async function cypherCommand(query, options) {
+    if (!query?.trim()) {
+        console.error('Usage: gitnexus cypher <cypher_query>');
+        process.exit(1);
+    }
+    const backend = await getBackend();
+    const result = await backend.callTool('cypher', {
+        query,
+        repo: options?.repo,
+    });
+    output(result);
+}
+export async function syncUnrealAssetManifestCommand(options) {
+    const backend = await getBackend();
+    const result = await backend.callTool('sync_unreal_asset_manifest', {
+        repo: options?.repo,
+    });
+    output(result);
+}
+export async function findNativeBlueprintReferencesCommand(functionName, options) {
+    if (!functionName?.trim() && !options?.uid) {
+        console.error('Usage: gitnexus unreal-find-refs <Class::Function> [--uid <uid>]');
+        process.exit(1);
+    }
+    const backend = await getBackend();
+    const result = await backend.callTool('find_native_blueprint_references', {
+        function: functionName || undefined,
+        symbol_uid: options?.uid,
+        class_name: options?.className,
+        file_path: options?.file,
+        refresh_manifest: options?.refreshManifest ?? false,
+        max_candidates: options?.maxCandidates ? parseInt(options.maxCandidates, 10) : undefined,
+        repo: options?.repo,
+    });
+    output(result);
+}
+export async function expandBlueprintChainCommand(assetPath, chainAnchorId, options) {
+    if (!assetPath?.trim() || !chainAnchorId?.trim()) {
+        console.error('Usage: gitnexus unreal-expand-chain <asset_path> <chain_anchor_id>');
+        process.exit(1);
+    }
+    const backend = await getBackend();
+    const result = await backend.callTool('expand_blueprint_chain', {
+        asset_path: assetPath,
+        chain_anchor_id: chainAnchorId,
+        direction: options?.direction || 'downstream',
+        max_depth: options?.depth ? parseInt(options.depth, 10) : undefined,
+        repo: options?.repo,
+    });
+    output(result);
+}
+export async function findBlueprintsDerivedFromNativeClassCommand(className, options) {
+    if (!className?.trim()) {
+        console.error('Usage: gitnexus unreal-derived-blueprints <class_name>');
+        process.exit(1);
+    }
+    const backend = await getBackend();
+    const result = await backend.callTool('find_blueprints_derived_from_native_class', {
+        class_name: className,
+        refresh_manifest: options?.refreshManifest ?? false,
+        max_results: options?.maxResults ? parseInt(options.maxResults, 10) : undefined,
+        repo: options?.repo,
+    });
+    output(result);
+}

package/dist/cli/wiki.d.ts

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+/**
+ * Wiki Command
+ *
+ * Generates repository documentation from the knowledge graph.
+ * Usage: gitnexus wiki [path] [options]
+ */
+export interface WikiCommandOptions {
+    force?: boolean;
+    model?: string;
+    baseUrl?: string;
+    apiKey?: string;
+    concurrency?: string;
+    gist?: boolean;
+}
+export declare const wikiCommand: (inputPath?: string, options?: WikiCommandOptions) => Promise<void>;

package/dist/cli/wiki.js

@@ -0,0 +1,365 @@
+/**
+ * Wiki Command
+ *
+ * Generates repository documentation from the knowledge graph.
+ * Usage: gitnexus wiki [path] [options]
+ */
+import path from 'path';
+import readline from 'readline';
+import { execSync, execFileSync } from 'child_process';
+import cliProgress from 'cli-progress';
+import { getGitRoot, isGitRepo } from '../storage/git.js';
+import { getStoragePaths, loadMeta, loadCLIConfig, saveCLIConfig } from '../storage/repo-manager.js';
+import { WikiGenerator } from '../core/wiki/generator.js';
+import { resolveLLMConfig } from '../core/wiki/llm-client.js';
+/**
+ * Prompt the user for input via stdin.
+ */
+function prompt(question, hide = false) {
+    return new Promise((resolve) => {
+        const rl = readline.createInterface({
+            input: process.stdin,
+            output: process.stdout,
+        });
+        if (hide && process.stdin.isTTY) {
+            // Mask input for API keys
+            process.stdout.write(question);
+            let input = '';
+            process.stdin.setRawMode(true);
+            process.stdin.resume();
+            process.stdin.setEncoding('utf-8');
+            const onData = (char) => {
+                if (char === '\n' || char === '\r' || char === '\u0004') {
+                    process.stdin.setRawMode(false);
+                    process.stdin.removeListener('data', onData);
+                    process.stdout.write('\n');
+                    rl.close();
+                    resolve(input);
+                }
+                else if (char === '\u0003') {
+                    // Ctrl+C
+                    process.stdin.setRawMode(false);
+                    rl.close();
+                    process.exit(1);
+                }
+                else if (char === '\u007F' || char === '\b') {
+                    // Backspace
+                    if (input.length > 0) {
+                        input = input.slice(0, -1);
+                        process.stdout.write('\b \b');
+                    }
+                }
+                else {
+                    input += char;
+                    process.stdout.write('*');
+                }
+            };
+            process.stdin.on('data', onData);
+        }
+        else {
+            rl.question(question, (answer) => {
+                rl.close();
+                resolve(answer.trim());
+            });
+        }
+    });
+}
+export const wikiCommand = async (inputPath, options) => {
+    console.log('\n  GitNexus Wiki Generator\n');
+    // ── Resolve repo path ───────────────────────────────────────────────
+    let repoPath;
+    if (inputPath) {
+        repoPath = path.resolve(inputPath);
+    }
+    else {
+        const gitRoot = getGitRoot(process.cwd());
+        if (!gitRoot) {
+            console.log('  Error: Not inside a git repository\n');
+            process.exitCode = 1;
+            return;
+        }
+        repoPath = gitRoot;
+    }
+    if (!isGitRepo(repoPath)) {
+        console.log('  Error: Not a git repository\n');
+        process.exitCode = 1;
+        return;
+    }
+    // ── Check for existing index ────────────────────────────────────────
+    const { storagePath, lbugPath } = getStoragePaths(repoPath);
+    const meta = await loadMeta(storagePath);
+    if (!meta) {
+        console.log('  Error: No GitNexus index found.');
+        console.log('  Run `gitnexus analyze` first to index this repository.\n');
+        process.exitCode = 1;
+        return;
+    }
+    // ── Resolve LLM config (with interactive fallback) ─────────────────
+    // Save any CLI overrides immediately
+    if (options?.apiKey || options?.model || options?.baseUrl) {
+        const existing = await loadCLIConfig();
+        const updates = {};
+        if (options.apiKey)
+            updates.apiKey = options.apiKey;
+        if (options.model)
+            updates.model = options.model;
+        if (options.baseUrl)
+            updates.baseUrl = options.baseUrl;
+        await saveCLIConfig({ ...existing, ...updates });
+        console.log('  Config saved to ~/.gitnexus/config.json\n');
+    }
+    const savedConfig = await loadCLIConfig();
+    const hasSavedConfig = !!(savedConfig.apiKey && savedConfig.baseUrl);
+    const hasCLIOverrides = !!(options?.apiKey || options?.model || options?.baseUrl);
+    let llmConfig = await resolveLLMConfig({
+        model: options?.model,
+        baseUrl: options?.baseUrl,
+        apiKey: options?.apiKey,
+    });
+    // Run interactive setup if no saved config and no CLI flags provided
+    // (even if env vars exist — let user explicitly choose their provider)
+    if (!hasSavedConfig && !hasCLIOverrides) {
+        if (!process.stdin.isTTY) {
+            if (!llmConfig.apiKey) {
+                console.log('  Error: No LLM API key found.');
+                console.log('  Set OPENAI_API_KEY, GITNEXUS_API_KEY, or AI_GATEWAY_API_KEY environment variable,');
+                console.log('  or pass --api-key <key>.\n');
+                process.exitCode = 1;
+                return;
+            }
+            // Non-interactive with env var — just use it
+        }
+        else {
+            console.log('  No LLM configured. Let\'s set it up.\n');
+            console.log('  Supports OpenAI, OpenRouter, or any OpenAI-compatible API.\n');
+            // Provider selection
+            console.log('  [1] OpenAI (api.openai.com)');
+            console.log('  [2] OpenRouter (openrouter.ai)');
+            console.log('  [3] Custom endpoint\n');
+            const choice = await prompt('  Select provider (1/2/3): ');
+            let baseUrl;
+            let defaultModel;
+            if (choice === '2') {
+                baseUrl = 'https://openrouter.ai/api/v1';
+                defaultModel = 'minimax/minimax-m2.5';
+            }
+            else if (choice === '3') {
+                baseUrl = await prompt('  Base URL (e.g. http://localhost:11434/v1): ');
+                if (!baseUrl) {
+                    console.log('\n  No URL provided. Aborting.\n');
+                    process.exitCode = 1;
+                    return;
+                }
+                defaultModel = 'gpt-4o-mini';
+            }
+            else {
+                baseUrl = 'https://api.openai.com/v1';
+                defaultModel = 'gpt-4o-mini';
+            }
+            // Model
+            const modelInput = await prompt(`  Model (default: ${defaultModel}): `);
+            const model = modelInput || defaultModel;
+            // API key — pre-fill hint if env var exists
+            const envKey = process.env.GITNEXUS_API_KEY || process.env.OPENAI_API_KEY || process.env.AI_GATEWAY_API_KEY || '';
+            let key;
+            if (envKey) {
+                const masked = envKey.slice(0, 6) + '...' + envKey.slice(-4);
+                const useEnv = await prompt(`  Use existing env key (${masked})? (Y/n): `);
+                if (!useEnv || useEnv.toLowerCase() === 'y' || useEnv.toLowerCase() === 'yes') {
+                    key = envKey;
+                }
+                else {
+                    key = await prompt('  API key: ', true);
+                }
+            }
+            else {
+                key = await prompt('  API key: ', true);
+            }
+            if (!key) {
+                console.log('\n  No key provided. Aborting.\n');
+                process.exitCode = 1;
+                return;
+            }
+            // Save
+            await saveCLIConfig({ apiKey: key, baseUrl, model });
+            console.log('  Config saved to ~/.gitnexus/config.json\n');
+            llmConfig = { ...llmConfig, apiKey: key, baseUrl, model };
+        }
+    }
+    // ── Setup progress bar with elapsed timer ──────────────────────────
+    const bar = new cliProgress.SingleBar({
+        format: '  {bar} {percentage}% | {phase}',
+        barCompleteChar: '\u2588',
+        barIncompleteChar: '\u2591',
+        hideCursor: true,
+        barGlue: '',
+        autopadding: true,
+        clearOnComplete: false,
+        stopOnComplete: false,
+    }, cliProgress.Presets.shades_grey);
+    bar.start(100, 0, { phase: 'Initializing...' });
+    const t0 = Date.now();
+    let lastPhase = '';
+    let phaseStart = t0;
+    // Tick elapsed time every second while stuck on the same phase
+    const elapsedTimer = setInterval(() => {
+        if (lastPhase) {
+            const elapsed = Math.round((Date.now() - phaseStart) / 1000);
+            if (elapsed >= 3) {
+                bar.update({ phase: `${lastPhase} (${elapsed}s)` });
+            }
+        }
+    }, 1000);
+    // ── Run generator ───────────────────────────────────────────────────
+    const wikiOptions = {
+        force: options?.force,
+        model: options?.model,
+        baseUrl: options?.baseUrl,
+        concurrency: options?.concurrency ? parseInt(options.concurrency, 10) : undefined,
+    };
+    const generator = new WikiGenerator(repoPath, storagePath, lbugPath, llmConfig, wikiOptions, (phase, percent, detail) => {
+        const label = detail || phase;
+        if (label !== lastPhase) {
+            lastPhase = label;
+            phaseStart = Date.now();
+        }
+        bar.update(percent, { phase: label });
+    });
+    try {
+        const result = await generator.run();
+        clearInterval(elapsedTimer);
+        bar.update(100, { phase: 'Done' });
+        bar.stop();
+        const elapsed = ((Date.now() - t0) / 1000).toFixed(1);
+        const wikiDir = path.join(storagePath, 'wiki');
+        const viewerPath = path.join(wikiDir, 'index.html');
+        if (result.mode === 'up-to-date' && !options?.force) {
+            console.log('\n  Wiki is already up to date.');
+            console.log(`  Viewer: ${viewerPath}\n`);
+            await maybePublishGist(viewerPath, options?.gist);
+            return;
+        }
+        console.log(`\n  Wiki generated successfully (${elapsed}s)\n`);
+        console.log(`  Mode: ${result.mode}`);
+        console.log(`  Pages: ${result.pagesGenerated}`);
+        console.log(`  Output: ${wikiDir}`);
+        console.log(`  Viewer: ${viewerPath}`);
+        if (result.failedModules && result.failedModules.length > 0) {
+            console.log(`\n  Failed modules (${result.failedModules.length}):`);
+            for (const mod of result.failedModules) {
+                console.log(`    - ${mod}`);
+            }
+            console.log('  Re-run to retry failed modules (pages will be regenerated).');
+        }
+        console.log('');
+        await maybePublishGist(viewerPath, options?.gist);
+    }
+    catch (err) {
+        clearInterval(elapsedTimer);
+        bar.stop();
+        if (err.message?.includes('No source files')) {
+            console.log(`\n  ${err.message}\n`);
+        }
+        else if (err.message?.includes('API key') || err.message?.includes('API error')) {
+            console.log(`\n  LLM Error: ${err.message}\n`);
+            // Offer to reconfigure on auth-related failures
+            const isAuthError = err.message?.includes('401') || err.message?.includes('403')
+                || err.message?.includes('502') || err.message?.includes('authenticate')
+                || err.message?.includes('Unauthorized');
+            if (isAuthError && process.stdin.isTTY) {
+                const answer = await new Promise((resolve) => {
+                    const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
+                    rl.question('  Reconfigure LLM settings? (Y/n): ', (ans) => { rl.close(); resolve(ans.trim().toLowerCase()); });
+                });
+                if (!answer || answer === 'y' || answer === 'yes') {
+                    // Clear saved config so next run triggers interactive setup
+                    await saveCLIConfig({});
+                    console.log('  Config cleared. Run `gitnexus wiki` again to reconfigure.\n');
+                }
+            }
+        }
+        else {
+            console.log(`\n  Error: ${err.message}\n`);
+            if (process.env.DEBUG) {
+                console.error(err);
+            }
+        }
+        process.exitCode = 1;
+    }
+};
+// ─── Gist Publishing ───────────────────────────────────────────────────
+function hasGhCLI() {
+    try {
+        execSync('gh --version', { stdio: 'ignore' });
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+function publishGist(htmlPath) {
+    try {
+        const output = execFileSync('gh', [
+            'gist', 'create', htmlPath,
+            '--desc', 'Repository Wiki — generated by GitNexus',
+            '--public',
+        ], { encoding: 'utf-8', stdio: ['pipe', 'pipe', 'pipe'] }).trim();
+        // gh gist create prints the gist URL as the last line
+        const lines = output.split('\n');
+        const gistUrl = lines.find(l => l.includes('gist.github.com')) || lines[lines.length - 1];
+        if (!gistUrl || !gistUrl.includes('gist.github.com'))
+            return null;
+        // Build a raw viewer URL via gist.githack.com
+        // gist URL format: https://gist.github.com/{user}/{id}
+        const match = gistUrl.match(/gist\.github\.com\/([^/]+)\/([a-f0-9]+)/);
+        let rawUrl = gistUrl;
+        if (match) {
+            rawUrl = `https://gistcdn.githack.com/${match[1]}/${match[2]}/raw/index.html`;
+        }
+        return { url: gistUrl.trim(), rawUrl };
+    }
+    catch {
+        return null;
+    }
+}
+async function maybePublishGist(htmlPath, gistFlag) {
+    if (gistFlag === false)
+        return;
+    // Check that the HTML file exists
+    try {
+        const fs = await import('fs/promises');
+        await fs.access(htmlPath);
+    }
+    catch {
+        return;
+    }
+    if (!hasGhCLI()) {
+        if (gistFlag) {
+            console.log('  GitHub CLI (gh) is not installed. Cannot publish gist.');
+            console.log('  Install it: https://cli.github.com\n');
+        }
+        return;
+    }
+    let shouldPublish = !!gistFlag;
+    if (!shouldPublish && process.stdin.isTTY) {
+        const answer = await new Promise((resolve) => {
+            const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
+            rl.question('  Publish wiki as a GitHub Gist for easy viewing? (Y/n): ', (ans) => {
+                rl.close();
+                resolve(ans.trim().toLowerCase());
+            });
+        });
+        shouldPublish = !answer || answer === 'y' || answer === 'yes';
+    }
+    if (!shouldPublish)
+        return;
+    console.log('\n  Publishing to GitHub Gist...');
+    const result = publishGist(htmlPath);
+    if (result) {
+        console.log(`  Gist:   ${result.url}`);
+        console.log(`  Viewer: ${result.rawUrl}\n`);
+    }
+    else {
+        console.log('  Failed to publish gist. Make sure `gh auth login` is configured.\n');
+    }
+}

package/dist/config/ignore-service.d.ts

@@ -0,0 +1,26 @@
+import { type Ignore } from 'ignore';
+import type { Path } from 'path-scurry';
+export declare const shouldIgnorePath: (filePath: string) => boolean;
+/** Check if a directory name is in the hardcoded ignore list */
+export declare const isHardcodedIgnoredDirectory: (name: string) => boolean;
+/**
+ * Load .gitignore and .gitnexusignore rules from the repo root.
+ * Returns an `ignore` instance with all patterns, or null if no files found.
+ */
+export interface IgnoreOptions {
+    /** Skip .gitignore parsing, only read .gitnexusignore. Defaults to GITNEXUS_NO_GITIGNORE env var. */
+    noGitignore?: boolean;
+}
+export declare const loadIgnoreRules: (repoPath: string, options?: IgnoreOptions) => Promise<Ignore | null>;
+/**
+ * Create a glob-compatible ignore filter combining:
+ * - .gitignore / .gitnexusignore patterns (via `ignore` package)
+ * - Hardcoded DEFAULT_IGNORE_LIST, IGNORED_EXTENSIONS, IGNORED_FILES
+ *
+ * Returns an IgnoreLike object for glob's `ignore` option,
+ * enabling directory-level pruning during traversal.
+ */
+export declare const createIgnoreFilter: (repoPath: string, options?: IgnoreOptions) => Promise<{
+    ignored(p: Path): boolean;
+    childrenIgnored(p: Path): boolean;
+}>;