@duytransipher/gitnexus 1.4.6-sipher.0

package/dist/core/lbug/lbug-adapter.js

@@ -0,0 +1,769 @@
+import fs from 'fs/promises';
+import { createReadStream } from 'fs';
+import { createInterface } from 'readline';
+import path from 'path';
+import lbug from '@ladybugdb/core';
+import { NODE_TABLES, REL_TABLE_NAME, SCHEMA_QUERIES, EMBEDDING_TABLE_NAME, } from './schema.js';
+import { streamAllCSVsToDisk } from './csv-generator.js';
+let db = null;
+let conn = null;
+let currentDbPath = null;
+let ftsLoaded = false;
+/** Expose the current Database for pool adapter reuse in tests. */
+export const getDatabase = () => db;
+// Global session lock for operations that touch module-level lbug globals.
+// This guarantees no DB switch can happen while an operation is running.
+let sessionLock = Promise.resolve();
+const runWithSessionLock = async (operation) => {
+    const previous = sessionLock;
+    let release = null;
+    sessionLock = new Promise(resolve => {
+        release = resolve;
+    });
+    await previous;
+    try {
+        return await operation();
+    }
+    finally {
+        release?.();
+    }
+};
+const normalizeCopyPath = (filePath) => filePath.replace(/\\/g, '/');
+export const initLbug = async (dbPath) => {
+    return runWithSessionLock(() => ensureLbugInitialized(dbPath));
+};
+/**
+ * Execute multiple queries against one repo DB atomically.
+ * While the callback runs, no other request can switch the active DB.
+ */
+export const withLbugDb = async (dbPath, operation) => {
+    return runWithSessionLock(async () => {
+        await ensureLbugInitialized(dbPath);
+        return operation();
+    });
+};
+const ensureLbugInitialized = async (dbPath) => {
+    if (conn && currentDbPath === dbPath) {
+        return { db, conn };
+    }
+    await doInitLbug(dbPath);
+    return { db, conn };
+};
+const doInitLbug = async (dbPath) => {
+    // Different database requested — close the old one first
+    if (conn || db) {
+        try {
+            if (conn)
+                await conn.close();
+        }
+        catch { }
+        try {
+            if (db)
+                await db.close();
+        }
+        catch { }
+        conn = null;
+        db = null;
+        currentDbPath = null;
+        ftsLoaded = false;
+    }
+    // LadybugDB stores the database as a single file (not a directory).
+    // If the path already exists, it must be a valid LadybugDB database file.
+    // Remove stale empty directories or files from older versions.
+    try {
+        const stat = await fs.lstat(dbPath);
+        if (stat.isSymbolicLink()) {
+            // Never follow symlinks — just remove the link itself
+            await fs.unlink(dbPath);
+        }
+        else if (stat.isDirectory()) {
+            // Verify path is within expected storage directory before deleting
+            const realPath = await fs.realpath(dbPath);
+            const parentDir = path.dirname(dbPath);
+            const realParent = await fs.realpath(parentDir);
+            if (!realPath.startsWith(realParent + path.sep) && realPath !== realParent) {
+                throw new Error(`Refusing to delete ${dbPath}: resolved path ${realPath} is outside storage directory`);
+            }
+            // Old-style directory database or empty leftover - remove it
+            await fs.rm(dbPath, { recursive: true, force: true });
+        }
+        // If it's a file, assume it's an existing LadybugDB database - LadybugDB will open it
+    }
+    catch {
+        // Path doesn't exist, which is what LadybugDB wants for a new database
+    }
+    // Ensure parent directory exists
+    const parentDir = path.dirname(dbPath);
+    await fs.mkdir(parentDir, { recursive: true });
+    db = new lbug.Database(dbPath);
+    conn = new lbug.Connection(db);
+    for (const schemaQuery of SCHEMA_QUERIES) {
+        try {
+            await conn.query(schemaQuery);
+        }
+        catch (err) {
+            // Only ignore "already exists" errors - log everything else
+            const msg = err instanceof Error ? err.message : String(err);
+            if (!msg.includes('already exists')) {
+                console.warn(`⚠️ Schema creation warning: ${msg.slice(0, 120)}`);
+            }
+        }
+    }
+    currentDbPath = dbPath;
+    return { db, conn };
+};
+export const loadGraphToLbug = async (graph, repoPath, storagePath, onProgress) => {
+    if (!conn) {
+        throw new Error('LadybugDB not initialized. Call initLbug first.');
+    }
+    const log = onProgress || (() => { });
+    const csvDir = path.join(storagePath, 'csv');
+    log('Streaming CSVs to disk...');
+    const csvResult = await streamAllCSVsToDisk(graph, repoPath, csvDir);
+    const validTables = new Set(NODE_TABLES);
+    const getNodeLabel = (nodeId) => {
+        if (nodeId.startsWith('comm_'))
+            return 'Community';
+        if (nodeId.startsWith('proc_'))
+            return 'Process';
+        return nodeId.split(':')[0];
+    };
+    // Bulk COPY all node CSVs (sequential — LadybugDB allows only one write txn at a time)
+    const nodeFiles = [...csvResult.nodeFiles.entries()];
+    const totalSteps = nodeFiles.length + 1; // +1 for relationships
+    let stepsDone = 0;
+    for (const [table, { csvPath, rows }] of nodeFiles) {
+        stepsDone++;
+        log(`Loading nodes ${stepsDone}/${totalSteps}: ${table} (${rows.toLocaleString()} rows)`);
+        const normalizedPath = normalizeCopyPath(csvPath);
+        const copyQuery = getCopyQuery(table, normalizedPath);
+        try {
+            await conn.query(copyQuery);
+        }
+        catch (err) {
+            try {
+                const retryQuery = copyQuery.replace('auto_detect=false)', 'auto_detect=false, IGNORE_ERRORS=true)');
+                await conn.query(retryQuery);
+            }
+            catch (retryErr) {
+                const retryMsg = retryErr instanceof Error ? retryErr.message : String(retryErr);
+                throw new Error(`COPY failed for ${table}: ${retryMsg.slice(0, 200)}`);
+            }
+        }
+    }
+    // Bulk COPY relationships — split by FROM→TO label pair (LadybugDB requires it)
+    // Stream-read the relation CSV line by line to avoid exceeding V8 max string length
+    let relHeader = '';
+    const relsByPair = new Map();
+    let skippedRels = 0;
+    let totalValidRels = 0;
+    await new Promise((resolve, reject) => {
+        const rl = createInterface({ input: createReadStream(csvResult.relCsvPath, 'utf-8'), crlfDelay: Infinity });
+        let isFirst = true;
+        rl.on('line', (line) => {
+            if (isFirst) {
+                relHeader = line;
+                isFirst = false;
+                return;
+            }
+            if (!line.trim())
+                return;
+            const match = line.match(/"([^"]*)","([^"]*)"/);
+            if (!match) {
+                skippedRels++;
+                return;
+            }
+            const fromLabel = getNodeLabel(match[1]);
+            const toLabel = getNodeLabel(match[2]);
+            if (!validTables.has(fromLabel) || !validTables.has(toLabel)) {
+                skippedRels++;
+                return;
+            }
+            const pairKey = `${fromLabel}|${toLabel}`;
+            let list = relsByPair.get(pairKey);
+            if (!list) {
+                list = [];
+                relsByPair.set(pairKey, list);
+            }
+            list.push(line);
+            totalValidRels++;
+        });
+        rl.on('close', resolve);
+        rl.on('error', reject);
+    });
+    const insertedRels = totalValidRels;
+    const warnings = [];
+    if (insertedRels > 0) {
+        log(`Loading edges: ${insertedRels.toLocaleString()} across ${relsByPair.size} types`);
+        let pairIdx = 0;
+        let failedPairEdges = 0;
+        const failedPairLines = [];
+        for (const [pairKey, lines] of relsByPair) {
+            pairIdx++;
+            const [fromLabel, toLabel] = pairKey.split('|');
+            const pairCsvPath = path.join(csvDir, `rel_${fromLabel}_${toLabel}.csv`);
+            await fs.writeFile(pairCsvPath, relHeader + '\n' + lines.join('\n'), 'utf-8');
+            const normalizedPath = normalizeCopyPath(pairCsvPath);
+            const copyQuery = `COPY ${REL_TABLE_NAME} FROM "${normalizedPath}" (from="${fromLabel}", to="${toLabel}", HEADER=true, ESCAPE='"', DELIM=',', QUOTE='"', PARALLEL=false, auto_detect=false)`;
+            if (pairIdx % 5 === 0 || lines.length > 1000) {
+                log(`Loading edges: ${pairIdx}/${relsByPair.size} types (${fromLabel} -> ${toLabel})`);
+            }
+            try {
+                await conn.query(copyQuery);
+            }
+            catch (err) {
+                try {
+                    const retryQuery = copyQuery.replace('auto_detect=false)', 'auto_detect=false, IGNORE_ERRORS=true)');
+                    await conn.query(retryQuery);
+                }
+                catch (retryErr) {
+                    const retryMsg = retryErr instanceof Error ? retryErr.message : String(retryErr);
+                    warnings.push(`${fromLabel}->${toLabel} (${lines.length} edges): ${retryMsg.slice(0, 80)}`);
+                    failedPairEdges += lines.length;
+                    failedPairLines.push(...lines);
+                }
+            }
+            try {
+                await fs.unlink(pairCsvPath);
+            }
+            catch { }
+        }
+        if (failedPairLines.length > 0) {
+            log(`Inserting ${failedPairEdges} edges individually (missing schema pairs)`);
+            await fallbackRelationshipInserts([relHeader, ...failedPairLines], validTables, getNodeLabel);
+        }
+    }
+    // Cleanup all CSVs
+    try {
+        await fs.unlink(csvResult.relCsvPath);
+    }
+    catch { }
+    for (const [, { csvPath }] of csvResult.nodeFiles) {
+        try {
+            await fs.unlink(csvPath);
+        }
+        catch { }
+    }
+    try {
+        const remaining = await fs.readdir(csvDir);
+        for (const f of remaining) {
+            try {
+                await fs.unlink(path.join(csvDir, f));
+            }
+            catch { }
+        }
+    }
+    catch { }
+    try {
+        await fs.rmdir(csvDir);
+    }
+    catch { }
+    return { success: true, insertedRels, skippedRels, warnings };
+};
+// LadybugDB default ESCAPE is '\' (backslash), but our CSV uses RFC 4180 escaping ("" for literal quotes).
+// Source code content is full of backslashes which confuse the auto-detection.
+// We MUST explicitly set ESCAPE='"' to use RFC 4180 escaping, and disable auto_detect to prevent
+// LadybugDB from overriding our settings based on sample rows.
+const COPY_CSV_OPTS = `(HEADER=true, ESCAPE='"', DELIM=',', QUOTE='"', PARALLEL=false, auto_detect=false)`;
+// Multi-language table names that were created with backticks in CODE_ELEMENT_BASE
+// and must always be referenced with backticks in queries
+const BACKTICK_TABLES = new Set([
+    'Struct', 'Enum', 'Macro', 'Typedef', 'Union', 'Namespace', 'Trait', 'Impl',
+    'TypeAlias', 'Const', 'Static', 'Property', 'Record', 'Delegate', 'Annotation',
+    'Constructor', 'Template', 'Module',
+]);
+const escapeTableName = (table) => {
+    return BACKTICK_TABLES.has(table) ? `\`${table}\`` : table;
+};
+/** Fallback: insert relationships one-by-one if COPY fails */
+const fallbackRelationshipInserts = async (validRelLines, validTables, getNodeLabel) => {
+    if (!conn)
+        return;
+    const escapeLabel = (label) => {
+        return BACKTICK_TABLES.has(label) ? `\`${label}\`` : label;
+    };
+    for (let i = 1; i < validRelLines.length; i++) {
+        const line = validRelLines[i];
+        try {
+            const match = line.match(/"([^"]*)","([^"]*)","([^"]*)",([0-9.]+),"([^"]*)",([0-9-]+)/);
+            if (!match)
+                continue;
+            const [, fromId, toId, relType, confidenceStr, reason, stepStr] = match;
+            const fromLabel = getNodeLabel(fromId);
+            const toLabel = getNodeLabel(toId);
+            if (!validTables.has(fromLabel) || !validTables.has(toLabel))
+                continue;
+            const confidence = parseFloat(confidenceStr) || 1.0;
+            const step = parseInt(stepStr) || 0;
+            const esc = (s) => s.replace(/'/g, "''").replace(/\\/g, '\\\\').replace(/\n/g, '\\n').replace(/\r/g, '\\r');
+            await conn.query(`
+        MATCH (a:${escapeLabel(fromLabel)} {id: '${esc(fromId)}' }),
+              (b:${escapeLabel(toLabel)} {id: '${esc(toId)}' })
+        CREATE (a)-[:${REL_TABLE_NAME} {type: '${esc(relType)}', confidence: ${confidence}, reason: '${esc(reason)}', step: ${step}}]->(b)
+      `);
+        }
+        catch {
+            // skip
+        }
+    }
+};
+/** Tables with isExported column (TypeScript/JS-native types) */
+const TABLES_WITH_EXPORTED = new Set(['Function', 'Class', 'Interface', 'Method', 'CodeElement']);
+const getCopyQuery = (table, filePath) => {
+    const t = escapeTableName(table);
+    if (table === 'File') {
+        return `COPY ${t}(id, name, filePath, content) FROM "${filePath}" ${COPY_CSV_OPTS}`;
+    }
+    if (table === 'Folder') {
+        return `COPY ${t}(id, name, filePath) FROM "${filePath}" ${COPY_CSV_OPTS}`;
+    }
+    if (table === 'Community') {
+        return `COPY ${t}(id, label, heuristicLabel, keywords, description, enrichedBy, cohesion, symbolCount) FROM "${filePath}" ${COPY_CSV_OPTS}`;
+    }
+    if (table === 'Process') {
+        return `COPY ${t}(id, label, heuristicLabel, processType, stepCount, communities, entryPointId, terminalId) FROM "${filePath}" ${COPY_CSV_OPTS}`;
+    }
+    if (table === 'Method') {
+        return `COPY ${t}(id, name, filePath, startLine, endLine, isExported, content, description, parameterCount, returnType) FROM "${filePath}" ${COPY_CSV_OPTS}`;
+    }
+    // TypeScript/JS code element tables have isExported; multi-language tables do not
+    if (TABLES_WITH_EXPORTED.has(table)) {
+        return `COPY ${t}(id, name, filePath, startLine, endLine, isExported, content, description) FROM "${filePath}" ${COPY_CSV_OPTS}`;
+    }
+    // Multi-language tables (Struct, Impl, Trait, Macro, etc.)
+    return `COPY ${t}(id, name, filePath, startLine, endLine, content, description) FROM "${filePath}" ${COPY_CSV_OPTS}`;
+};
+/**
+ * Insert a single node to LadybugDB
+ * @param label - Node type (File, Function, Class, etc.)
+ * @param properties - Node properties
+ * @param dbPath - Path to LadybugDB database (optional if already initialized)
+ */
+export const insertNodeToLbug = async (label, properties, dbPath) => {
+    // Use provided dbPath or fall back to module-level db
+    const targetDbPath = dbPath || (db ? undefined : null);
+    if (!targetDbPath && !db) {
+        throw new Error('LadybugDB not initialized. Provide dbPath or call initLbug first.');
+    }
+    try {
+        const escapeValue = (v) => {
+            if (v === null || v === undefined)
+                return 'NULL';
+            if (typeof v === 'number')
+                return String(v);
+            // Escape backslashes first (for Windows paths), then single quotes
+            return `'${String(v).replace(/\\/g, '\\\\').replace(/'/g, "''").replace(/\n/g, '\\n').replace(/\r/g, '\\r')}'`;
+        };
+        // Build INSERT query based on node type
+        const t = escapeTableName(label);
+        let query;
+        if (label === 'File') {
+            query = `CREATE (n:File {id: ${escapeValue(properties.id)}, name: ${escapeValue(properties.name)}, filePath: ${escapeValue(properties.filePath)}, content: ${escapeValue(properties.content || '')}})`;
+        }
+        else if (label === 'Folder') {
+            query = `CREATE (n:Folder {id: ${escapeValue(properties.id)}, name: ${escapeValue(properties.name)}, filePath: ${escapeValue(properties.filePath)}})`;
+        }
+        else if (TABLES_WITH_EXPORTED.has(label)) {
+            const descPart = properties.description ? `, description: ${escapeValue(properties.description)}` : '';
+            query = `CREATE (n:${t} {id: ${escapeValue(properties.id)}, name: ${escapeValue(properties.name)}, filePath: ${escapeValue(properties.filePath)}, startLine: ${properties.startLine || 0}, endLine: ${properties.endLine || 0}, isExported: ${!!properties.isExported}, content: ${escapeValue(properties.content || '')}${descPart}})`;
+        }
+        else {
+            // Multi-language tables (Struct, Impl, Trait, Macro, etc.) — no isExported
+            const descPart = properties.description ? `, description: ${escapeValue(properties.description)}` : '';
+            query = `CREATE (n:${t} {id: ${escapeValue(properties.id)}, name: ${escapeValue(properties.name)}, filePath: ${escapeValue(properties.filePath)}, startLine: ${properties.startLine || 0}, endLine: ${properties.endLine || 0}, content: ${escapeValue(properties.content || '')}${descPart}})`;
+        }
+        // Use per-query connection if dbPath provided (avoids lock conflicts)
+        if (targetDbPath) {
+            const tempDb = new lbug.Database(targetDbPath);
+            const tempConn = new lbug.Connection(tempDb);
+            try {
+                await tempConn.query(query);
+                return true;
+            }
+            finally {
+                try {
+                    await tempConn.close();
+                }
+                catch { }
+                try {
+                    await tempDb.close();
+                }
+                catch { }
+            }
+        }
+        else if (conn) {
+            // Use existing persistent connection (when called from analyze)
+            await conn.query(query);
+            return true;
+        }
+        return false;
+    }
+    catch (e) {
+        // Node may already exist or other error
+        console.error(`Failed to insert ${label} node:`, e.message);
+        return false;
+    }
+};
+/**
+ * Batch insert multiple nodes to LadybugDB using a single connection
+ * @param nodes - Array of {label, properties} to insert
+ * @param dbPath - Path to LadybugDB database
+ * @returns Object with success count and error count
+ */
+export const batchInsertNodesToLbug = async (nodes, dbPath) => {
+    if (nodes.length === 0)
+        return { inserted: 0, failed: 0 };
+    const escapeValue = (v) => {
+        if (v === null || v === undefined)
+            return 'NULL';
+        if (typeof v === 'number')
+            return String(v);
+        // Escape backslashes first (for Windows paths), then single quotes, then newlines
+        return `'${String(v).replace(/\\/g, '\\\\').replace(/'/g, "''").replace(/\n/g, '\\n').replace(/\r/g, '\\r')}'`;
+    };
+    // Open a single connection for all inserts
+    const tempDb = new lbug.Database(dbPath);
+    const tempConn = new lbug.Connection(tempDb);
+    let inserted = 0;
+    let failed = 0;
+    try {
+        for (const { label, properties } of nodes) {
+            try {
+                let query;
+                // Use MERGE instead of CREATE for upsert behavior (handles duplicates gracefully)
+                const t = escapeTableName(label);
+                if (label === 'File') {
+                    query = `MERGE (n:File {id: ${escapeValue(properties.id)}}) SET n.name = ${escapeValue(properties.name)}, n.filePath = ${escapeValue(properties.filePath)}, n.content = ${escapeValue(properties.content || '')}`;
+                }
+                else if (label === 'Folder') {
+                    query = `MERGE (n:Folder {id: ${escapeValue(properties.id)}}) SET n.name = ${escapeValue(properties.name)}, n.filePath = ${escapeValue(properties.filePath)}`;
+                }
+                else if (TABLES_WITH_EXPORTED.has(label)) {
+                    const descPart = properties.description ? `, n.description = ${escapeValue(properties.description)}` : '';
+                    query = `MERGE (n:${t} {id: ${escapeValue(properties.id)}}) SET n.name = ${escapeValue(properties.name)}, n.filePath = ${escapeValue(properties.filePath)}, n.startLine = ${properties.startLine || 0}, n.endLine = ${properties.endLine || 0}, n.isExported = ${!!properties.isExported}, n.content = ${escapeValue(properties.content || '')}${descPart}`;
+                }
+                else {
+                    const descPart = properties.description ? `, n.description = ${escapeValue(properties.description)}` : '';
+                    query = `MERGE (n:${t} {id: ${escapeValue(properties.id)}}) SET n.name = ${escapeValue(properties.name)}, n.filePath = ${escapeValue(properties.filePath)}, n.startLine = ${properties.startLine || 0}, n.endLine = ${properties.endLine || 0}, n.content = ${escapeValue(properties.content || '')}${descPart}`;
+                }
+                await tempConn.query(query);
+                inserted++;
+            }
+            catch (e) {
+                // Don't console.error here - it corrupts MCP JSON-RPC on stderr
+                failed++;
+            }
+        }
+    }
+    finally {
+        try {
+            await tempConn.close();
+        }
+        catch { }
+        try {
+            await tempDb.close();
+        }
+        catch { }
+    }
+    return { inserted, failed };
+};
+export const executeQuery = async (cypher) => {
+    if (!conn) {
+        throw new Error('LadybugDB not initialized. Call initLbug first.');
+    }
+    const queryResult = await conn.query(cypher);
+    // LadybugDB uses getAll() instead of hasNext()/getNext()
+    // Query returns QueryResult for single queries, QueryResult[] for multi-statement
+    const result = Array.isArray(queryResult) ? queryResult[0] : queryResult;
+    const rows = await result.getAll();
+    return rows;
+};
+export const executeWithReusedStatement = async (cypher, paramsList) => {
+    if (!conn) {
+        throw new Error('LadybugDB not initialized. Call initLbug first.');
+    }
+    if (paramsList.length === 0)
+        return;
+    const SUB_BATCH_SIZE = 4;
+    for (let i = 0; i < paramsList.length; i += SUB_BATCH_SIZE) {
+        const subBatch = paramsList.slice(i, i + SUB_BATCH_SIZE);
+        const stmt = await conn.prepare(cypher);
+        if (!stmt.isSuccess()) {
+            const errMsg = await stmt.getErrorMessage();
+            throw new Error(`Prepare failed: ${errMsg}`);
+        }
+        try {
+            for (const params of subBatch) {
+                await conn.execute(stmt, params);
+            }
+        }
+        catch (e) {
+            // Log the error and continue with next batch
+            console.warn('Batch execution error:', e);
+        }
+        // Note: LadybugDB PreparedStatement doesn't require explicit close()
+    }
+};
+export const getLbugStats = async () => {
+    if (!conn)
+        return { nodes: 0, edges: 0 };
+    let totalNodes = 0;
+    for (const tableName of NODE_TABLES) {
+        try {
+            const queryResult = await conn.query(`MATCH (n:${escapeTableName(tableName)}) RETURN count(n) AS cnt`);
+            const nodeResult = Array.isArray(queryResult) ? queryResult[0] : queryResult;
+            const nodeRows = await nodeResult.getAll();
+            if (nodeRows.length > 0) {
+                totalNodes += Number(nodeRows[0]?.cnt ?? nodeRows[0]?.[0] ?? 0);
+            }
+        }
+        catch {
+            // ignore
+        }
+    }
+    let totalEdges = 0;
+    try {
+        const queryResult = await conn.query(`MATCH ()-[r:${REL_TABLE_NAME}]->() RETURN count(r) AS cnt`);
+        const edgeResult = Array.isArray(queryResult) ? queryResult[0] : queryResult;
+        const edgeRows = await edgeResult.getAll();
+        if (edgeRows.length > 0) {
+            totalEdges = Number(edgeRows[0]?.cnt ?? edgeRows[0]?.[0] ?? 0);
+        }
+    }
+    catch {
+        // ignore
+    }
+    return { nodes: totalNodes, edges: totalEdges };
+};
+/**
+ * Load cached embeddings from LadybugDB before a rebuild.
+ * Returns all embedding vectors so they can be re-inserted after the graph is reloaded,
+ * avoiding expensive re-embedding of unchanged nodes.
+ */
+export const loadCachedEmbeddings = async () => {
+    if (!conn) {
+        return { embeddingNodeIds: new Set(), embeddings: [] };
+    }
+    const embeddingNodeIds = new Set();
+    const embeddings = [];
+    try {
+        const rows = await conn.query(`MATCH (e:${EMBEDDING_TABLE_NAME}) RETURN e.nodeId AS nodeId, e.embedding AS embedding`);
+        const result = Array.isArray(rows) ? rows[0] : rows;
+        for (const row of await result.getAll()) {
+            const nodeId = String(row.nodeId ?? row[0] ?? '');
+            if (!nodeId)
+                continue;
+            embeddingNodeIds.add(nodeId);
+            const embedding = row.embedding ?? row[1];
+            if (embedding) {
+                embeddings.push({
+                    nodeId,
+                    embedding: Array.isArray(embedding) ? embedding.map(Number) : Array.from(embedding).map(Number),
+                });
+            }
+        }
+    }
+    catch { /* embedding table may not exist */ }
+    return { embeddingNodeIds, embeddings };
+};
+export const closeLbug = async () => {
+    if (conn) {
+        try {
+            await conn.close();
+        }
+        catch { }
+        conn = null;
+    }
+    if (db) {
+        try {
+            await db.close();
+        }
+        catch { }
+        db = null;
+    }
+    currentDbPath = null;
+    ftsLoaded = false;
+};
+export const isLbugReady = () => conn !== null && db !== null;
+/**
+ * Delete all nodes (and their relationships) for a specific file from LadybugDB
+ * @param filePath - The file path to delete nodes for
+ * @param dbPath - Optional path to LadybugDB for per-query connection
+ * @returns Object with counts of deleted nodes
+ */
+export const deleteNodesForFile = async (filePath, dbPath) => {
+    const usePerQuery = !!dbPath;
+    // Set up connection (either use existing or create per-query)
+    let tempDb = null;
+    let tempConn = null;
+    let targetConn = conn;
+    if (usePerQuery) {
+        tempDb = new lbug.Database(dbPath);
+        tempConn = new lbug.Connection(tempDb);
+        targetConn = tempConn;
+    }
+    else if (!conn) {
+        throw new Error('LadybugDB not initialized. Provide dbPath or call initLbug first.');
+    }
+    try {
+        let deletedNodes = 0;
+        const escapedPath = filePath.replace(/'/g, "''");
+        // Delete nodes from each table that has filePath
+        // DETACH DELETE removes the node and all its relationships
+        for (const tableName of NODE_TABLES) {
+            // Skip tables that don't have filePath (Community, Process)
+            if (tableName === 'Community' || tableName === 'Process')
+                continue;
+            try {
+                // First count how many we'll delete
+                const tn = escapeTableName(tableName);
+                const countResult = await targetConn.query(`MATCH (n:${tn}) WHERE n.filePath = '${escapedPath}' RETURN count(n) AS cnt`);
+                const result = Array.isArray(countResult) ? countResult[0] : countResult;
+                const rows = await result.getAll();
+                const count = Number(rows[0]?.cnt ?? rows[0]?.[0] ?? 0);
+                if (count > 0) {
+                    // Delete nodes (and implicitly their relationships via DETACH)
+                    await targetConn.query(`MATCH (n:${tn}) WHERE n.filePath = '${escapedPath}' DETACH DELETE n`);
+                    deletedNodes += count;
+                }
+            }
+            catch (e) {
+                // Some tables may not support this query, skip
+            }
+        }
+        // Also delete any embeddings for nodes in this file
+        try {
+            await targetConn.query(`MATCH (e:${EMBEDDING_TABLE_NAME}) WHERE e.nodeId STARTS WITH '${escapedPath}' DELETE e`);
+        }
+        catch {
+            // Embedding table may not exist or nodeId format may differ
+        }
+        return { deletedNodes };
+    }
+    finally {
+        // Close per-query connection if used
+        if (tempConn) {
+            try {
+                await tempConn.close();
+            }
+            catch { }
+        }
+        if (tempDb) {
+            try {
+                await tempDb.close();
+            }
+            catch { }
+        }
+    }
+};
+export const getEmbeddingTableName = () => EMBEDDING_TABLE_NAME;
+// ============================================================================
+// Full-Text Search (FTS) Functions
+// ============================================================================
+/**
+ * Load the FTS extension (required before using FTS functions).
+ * Safe to call multiple times — tracks loaded state via module-level ftsLoaded.
+ */
+export const loadFTSExtension = async () => {
+    if (ftsLoaded)
+        return;
+    if (!conn) {
+        throw new Error('LadybugDB not initialized. Call initLbug first.');
+    }
+    try {
+        await conn.query('INSTALL fts');
+        await conn.query('LOAD EXTENSION fts');
+        ftsLoaded = true;
+    }
+    catch (err) {
+        const msg = err?.message || '';
+        if (msg.includes('already loaded') || msg.includes('already installed') || msg.includes('already exists')) {
+            ftsLoaded = true;
+        }
+        else {
+            console.error('GitNexus: FTS extension load failed:', msg);
+        }
+    }
+};
+/**
+ * Create a full-text search index on a table
+ * @param tableName - The node table name (e.g., 'File', 'CodeSymbol')
+ * @param indexName - Name for the FTS index
+ * @param properties - List of properties to index (e.g., ['name', 'code'])
+ * @param stemmer - Stemming algorithm (default: 'porter')
+ */
+export const createFTSIndex = async (tableName, indexName, properties, stemmer = 'porter') => {
+    if (!conn) {
+        throw new Error('LadybugDB not initialized. Call initLbug first.');
+    }
+    await loadFTSExtension();
+    const propList = properties.map(p => `'${p}'`).join(', ');
+    const query = `CALL CREATE_FTS_INDEX('${tableName}', '${indexName}', [${propList}], stemmer := '${stemmer}')`;
+    try {
+        await conn.query(query);
+    }
+    catch (e) {
+        if (!e.message?.includes('already exists')) {
+            throw e;
+        }
+    }
+};
+/**
+ * Query a full-text search index
+ * @param tableName - The node table name
+ * @param indexName - FTS index name
+ * @param query - Search query string
+ * @param limit - Maximum results
+ * @param conjunctive - If true, all terms must match (AND); if false, any term matches (OR)
+ * @returns Array of { node properties, score }
+ */
+export const queryFTS = async (tableName, indexName, query, limit = 20, conjunctive = false) => {
+    if (!conn) {
+        throw new Error('LadybugDB not initialized. Call initLbug first.');
+    }
+    // Escape backslashes and single quotes to prevent Cypher injection
+    const escapedQuery = query.replace(/\\/g, '\\\\').replace(/'/g, "''");
+    const cypher = `
+    CALL QUERY_FTS_INDEX('${tableName}', '${indexName}', '${escapedQuery}', conjunctive := ${conjunctive})
+    RETURN node, score
+    ORDER BY score DESC
+    LIMIT ${limit}
+  `;
+    try {
+        const queryResult = await conn.query(cypher);
+        const result = Array.isArray(queryResult) ? queryResult[0] : queryResult;
+        const rows = await result.getAll();
+        return rows.map((row) => {
+            const node = row.node || row[0] || {};
+            const score = row.score ?? row[1] ?? 0;
+            return {
+                nodeId: node.nodeId || node.id || '',
+                name: node.name || '',
+                filePath: node.filePath || '',
+                score: typeof score === 'number' ? score : parseFloat(score) || 0,
+                ...node,
+            };
+        });
+    }
+    catch (e) {
+        // Return empty if index doesn't exist yet
+        if (e.message?.includes('does not exist')) {
+            return [];
+        }
+        throw e;
+    }
+};
+/**
+ * Drop an FTS index
+ */
+export const dropFTSIndex = async (tableName, indexName) => {
+    if (!conn) {
+        throw new Error('LadybugDB not initialized. Call initLbug first.');
+    }
+    try {
+        await conn.query(`CALL DROP_FTS_INDEX('${tableName}', '${indexName}')`);
+    }
+    catch {
+        // Index may not exist
+    }
+};