@documentation-robotics/cli 0.1.12 → 0.2.0

package/dist/commands/analyzer.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/commands/analyzer.ts"],
-  "sourcesContent": ["/**\n * Analyzer Commands - CLI surface for analyzer discovery, status, indexing, and querying\n *\n * Implements ten subcommands:\n * - discover: Scan for installed analyzers and select active analyzer\n * - status: Report analyzer detection and project index state\n * - index: Index the current project with the active analyzer\n * - endpoints: List discovered API endpoints from indexed project\n * - services: Query for services/components in the indexed project\n * - datastores: Query for datastores/databases inferred from code analysis\n * - callers: Query for callers of a specific function or symbol\n * - callees: Query for callees of a specific function or symbol\n * - query: Execute a raw query against the analyzer's graph\n * - verify: Verify that graph-discovered routes align with model endpoints\n */\n\nimport { Command } from \"commander\";\nimport { intro, outro, select, isCancel } from \"@clack/prompts\";\nimport ansis from \"ansis\";\nimport { promises as fs } from \"fs\";\nimport * as path from \"path\";\nimport { AnalyzerRegistry } from \"../analyzers/registry.js\";\nimport { MappingLoader } from \"../analyzers/mapping-loader.js\";\nimport { readSession, writeSession, writeStatus, readIndexMeta } from \"../analyzers/session-state.js\";\nimport { CLIError, ModelNotFoundError, ErrorCategory, categorizeError } from \"../utils/errors.js\";\nimport { findProjectRoot } from \"../utils/project-paths.js\";\nimport { performDiscover } from \"./discover-logic.js\";\nimport { formatVerifyReport } from \"../export/verify-formatters.js\";\nimport type { SessionState, AnalyzerStatus } from \"../analyzers/types.js\";\n\n/**\n * Register all analyzer subcommands\n */\nexport function analyzerCommands(program: Command): void {\n  const analyzer = program.command(\"analyzer\").description(\"Manage analyzer discovery and indexing\");\n\n  /**\n   * Discover subcommand - scan for installed analyzers\n   *\n   * Iterates through all registered analyzers, detects which are installed,\n   * and prompts for selection if needed. Persists selection to session.json.\n   */\n  analyzer\n    .command(\"discover\")\n    .description(\"Discover and select an analyzer\")\n    .option(\"--json\", \"Output as JSON\")\n    .option(\"--reselect\", \"Force re-selection even if analyzer already selected\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer discover                    # Scan and select analyzer\n  $ dr analyzer discover --reselect         # Force re-selection\n  $ dr analyzer discover --json             # Output discovery results as JSON`\n    )\n    .action(async (options) => {\n      try {\n        // Resolve project root for consistent session state path\n        const projectRoot = (await findProjectRoot()) || process.cwd();\n\n        // Initialize registry\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n\n        // Check if session already exists and not reselecting\n        if (!options.reselect) {\n          const session = await readSession(projectRoot);\n          if (session) {\n            if (options.json) {\n              // JSON mode: return discovery results with existing session as selected\n              const analyzerNames = await registry.getAnalyzerNames();\n              const analyzerOptions: any[] = [];\n\n              for (const name of analyzerNames) {\n                try {\n                  const backend = await registry.getAnalyzer(name);\n                  if (!backend) continue;\n                  const detection = await backend.detect();\n                  const mapper = await MappingLoader.load(name);\n                  const metadata = mapper.getAnalyzerMetadata();\n                  analyzerOptions.push({ backend, detection, metadata });\n                } catch (error) {\n                  // Log error but continue discovering other analyzers\n                  const errorMsg = error instanceof Error ? error.message : String(error);\n                  console.error(`Failed to discover analyzer \"${name}\": ${errorMsg}`);\n                }\n              }\n\n              const installed = analyzerOptions.filter((a) => a.detection.installed);\n              const discoveryResult: any = {\n                found: analyzerOptions.map((a) => ({\n                  name: a.backend.name,\n                  display_name: a.backend.displayName,\n                  description: a.metadata?.description || \"\",\n                  homepage: a.metadata?.homepage || \"\",\n                  installed: a.detection.installed,\n                })),\n                installed_count: installed.length,\n                selected: session.active_analyzer,\n              };\n\n              console.log(JSON.stringify(discoveryResult, null, 2));\n              return;\n            } else {\n              // Text mode: show message and return\n              console.log(\n                ansis.green(`\u2713 Using analyzer: ${session.active_analyzer} (use --reselect to change)`)\n              );\n              return;\n            }\n          }\n        }\n\n        // Run core discover logic\n        const discoverResult = await performDiscover(registry, {\n          json: options.json,\n          reselect: options.reselect,\n          isTTY: process.stdin.isTTY,\n        });\n\n        const { discoveryResult, installed, analyzerOptions, selectedAnalyzer, shouldWriteSession } = discoverResult;\n\n        // JSON output mode\n        if (options.json) {\n          // Only write session if an analyzer was actually selected\n          // (selectedAnalyzer is only set if analyzers are installed)\n          if (selectedAnalyzer && shouldWriteSession) {\n            const state: SessionState = {\n              active_analyzer: selectedAnalyzer,\n              selected_at: new Date().toISOString(),\n            };\n            await writeSession(state, projectRoot);\n            discoveryResult.selected = selectedAnalyzer;\n          }\n\n          console.log(JSON.stringify(discoveryResult, null, 2));\n          return;\n        }\n\n        // Text output mode - show all analyzers with install status\n        if (installed.length === 0) {\n          intro(ansis.blue(\"\uD83D\uDCCA Analyzer Discovery\"));\n          console.log(\"\");\n          console.log(ansis.yellow(\"No analyzers installed. Install one of the following:\"));\n          console.log(\"\");\n\n          for (const opt of analyzerOptions) {\n            const name = ansis.bold(opt.backend.displayName);\n            const homepage = opt.metadata?.homepage || \"(homepage not available)\";\n            console.log(`  ${name} ${ansis.dim(`(${homepage})`)}`);\n          }\n\n          console.log(\"\");\n          outro(ansis.dim(\"To install: follow the links above or use your package manager\"));\n\n          return;\n        }\n\n        // Prompt for selection\n        intro(ansis.blue(\"\uD83D\uDCCA Analyzer Selection\"));\n\n        if (process.stdin.isTTY) {\n          const selectedName = await select({\n            message: \"Select an analyzer\",\n            options: installed.map((a) => ({\n              value: a.backend.name,\n              label: a.backend.displayName,\n              hint: a.metadata?.description || \"\",\n            })),\n          });\n\n          if (isCancel(selectedName)) {\n            outro(ansis.dim(\"Cancelled\"));\n            return;\n          }\n\n          // Write session\n          const state: SessionState = {\n            active_analyzer: selectedName as string,\n            selected_at: new Date().toISOString(),\n          };\n          await writeSession(state, projectRoot);\n\n          outro(\n            ansis.green(\n              `\u2713 Selected analyzer: ${selectedName} (saved to .dr/analyzers/session.json)`\n            )\n          );\n        } else {\n          // Non-TTY: auto-select first installed analyzer\n          if (selectedAnalyzer) {\n            const state: SessionState = {\n              active_analyzer: selectedAnalyzer,\n              selected_at: new Date().toISOString(),\n            };\n            await writeSession(state, projectRoot);\n\n            console.log(\n              ansis.green(`\u2713 Selected analyzer: ${selectedAnalyzer} (non-interactive mode)`)\n            );\n            outro(ansis.dim(\"Saved to .dr/analyzers/session.json\"));\n          }\n        }\n      } catch (error) {\n        if (error instanceof CLIError) throw error;\n\n        const category = categorizeError(error);\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          category\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Status subcommand - report analyzer detection and project index state\n   */\n  analyzer\n    .command(\"status\")\n    .description(\"Check analyzer detection and project index status\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer status              # Show status of active analyzer\n  $ dr analyzer status --name cbm   # Show status of specific analyzer\n  $ dr analyzer status --json       # Output as JSON`\n    )\n    .action(async (options) => {\n      try {\n        // Resolve project root for consistent session state path\n        const projectRoot = (await findProjectRoot()) || process.cwd();\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND,\n            [\"Check the analyzer name with `dr analyzer discover`\"]\n          );\n        }\n\n        // Get status (use project root from findProjectRoot for backend operations)\n        const actualProjectRoot = await findProjectRoot();\n        let status: AnalyzerStatus;\n        if (actualProjectRoot) {\n          status = await backend.status(actualProjectRoot);\n        } else {\n          const detected = await backend.detect();\n          status = {\n            detected,\n            indexed: false,\n            fresh: false,\n          } as AnalyzerStatus;\n        }\n\n        // JSON output\n        if (options.json) {\n          console.log(JSON.stringify(status, null, 2));\n          if (actualProjectRoot) {\n            await writeStatus(status, actualProjectRoot, analyzerName);\n          }\n          return;\n        }\n\n        // Text output\n        console.log(\"\");\n        console.log(ansis.bold(\"Analyzer Status\"));\n        console.log(ansis.dim(\"\u2500\".repeat(40)));\n\n        console.log(\n          `Installed: ${status.detected.installed ? ansis.green(\"\u2713 Yes\") : ansis.red(\"\u2717 No\")}`\n        );\n\n        if (status.detected.binary_path) {\n          console.log(`Binary: ${ansis.dim(status.detected.binary_path)}`);\n        }\n\n        if (status.detected.version) {\n          console.log(`Version: ${ansis.dim(status.detected.version)}`);\n        }\n\n        // Only show MCP and contract info if analyzer is installed\n        if (status.detected.installed) {\n          console.log(\n            `MCP Registered: ${status.detected.mcp_registered ? ansis.green(\"\u2713 Yes\") : ansis.yellow(\"\u2717 No\")}`\n          );\n\n          console.log(\n            `Contract Valid: ${status.detected.contract_ok ? ansis.green(\"\u2713 Yes\") : ansis.yellow(\"\u2717 No\")}`\n          );\n        }\n\n        if (actualProjectRoot) {\n          console.log(\n            `Indexed: ${status.indexed ? ansis.green(\"\u2713 Yes\") : ansis.yellow(\"\u2717 No\")}`\n          );\n\n          if (status.indexed) {\n            console.log(\n              `Fresh: ${status.fresh ? ansis.green(\"\u2713 Yes\") : ansis.yellow(\"\u2717 No (use --force to reindex)\")}`\n            );\n\n            if (status.last_indexed) {\n              console.log(`Last indexed: ${ansis.dim(status.last_indexed)}`);\n            }\n          } else {\n            console.log(ansis.dim(\"Run `dr analyzer index` to index the project\"));\n          }\n        }\n\n        console.log(\"\");\n\n        // Write status file\n        if (actualProjectRoot) {\n          await writeStatus(status, actualProjectRoot, analyzerName);\n        }\n      } catch (error) {\n        if (error instanceof CLIError) throw error;\n\n        const category = categorizeError(error);\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          category\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Index subcommand - index the current project\n   */\n  analyzer\n    .command(\"index\")\n    .description(\"Index the current project with the analyzer\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--force\", \"Force re-indexing even if index is fresh\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer index              # Index with active analyzer\n  $ dr analyzer index --force      # Force re-index\n  $ dr analyzer index --name cbm   # Index with specific analyzer`\n    )\n    .action(async (options) => {\n      try {\n        // Find project root - required for indexing\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND,\n            [\"Check the analyzer name with `dr analyzer discover`\"]\n          );\n        }\n\n        // Check if installed\n        const detection = await backend.detect();\n        if (!detection.installed) {\n          // Get analyzer metadata for suggestions\n          const mapper = await MappingLoader.load(analyzerName);\n          const metadata = mapper.getAnalyzerMetadata();\n          const homepageUrl = metadata?.homepage || \"https://github.com/search?q=codebase-memory\";\n\n          throw new CLIError(\n            `Analyzer not installed: ${analyzerName}`,\n            ErrorCategory.USER,\n            [\n              \"Run `dr analyzer discover` to find available analyzers and installation instructions\",\n              `Visit: ${homepageUrl}`,\n            ]\n          );\n        }\n\n        // Index the project\n        console.log(`Indexing project with ${analyzerName}...`);\n        const result = await backend.index(projectRoot, { force: options.force });\n\n        console.log(ansis.green(`\u2713 Indexing complete`));\n        console.log(`  Nodes: ${result.node_count}`);\n        console.log(`  Edges: ${result.edge_count}`);\n        console.log(`  Git HEAD: ${result.git_head}`);\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          ErrorCategory.SYSTEM\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Endpoints subcommand - list API endpoints from indexed project\n   */\n  analyzer\n    .command(\"endpoints\")\n    .description(\"List discovered API endpoints from indexed project\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer endpoints              # List endpoints from active analyzer\n  $ dr analyzer endpoints --json       # Output as JSON\n  $ dr analyzer endpoints --name cbm   # List endpoints from specific analyzer`\n    )\n    .action(async (options) => {\n      try {\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const status = await backend.status(projectRoot);\n        if (!status.indexed) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` to index the project first\"]\n          );\n        }\n\n        // Query for endpoints\n        const endpoints = await backend.endpoints(projectRoot);\n\n        // JSON output\n        if (options.json) {\n          console.log(JSON.stringify(endpoints, null, 2));\n          return;\n        }\n\n        // Table output\n        if (endpoints.length === 0) {\n          console.log(ansis.yellow(\"No endpoints found\"));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`API Endpoints (${endpoints.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(135)));\n\n        // Print header\n        const methodWidth = 8;\n        const pathWidth = 20;\n        const nameWidth = 18;\n        const idFragmentWidth = 18;\n        const symbolWidth = 18;\n        const confidenceWidth = 12;\n        const fileWidth = 25;\n\n        console.log(\n          ansis.cyan(\n            `${\"Method\".padEnd(methodWidth)} ${\"Path\".padEnd(pathWidth)} ${\"Name\".padEnd(nameWidth)} ${\"ID Fragment\".padEnd(idFragmentWidth)} ${\"Symbol\".padEnd(symbolWidth)} ${\"Confidence\".padEnd(confidenceWidth)} File`\n          )\n        );\n        console.log(ansis.dim(\"\u2500\".repeat(135)));\n\n        // Print each endpoint\n        for (const endpoint of endpoints) {\n          const method = endpoint.http_method.padEnd(methodWidth);\n          const path = endpoint.http_path.substring(0, pathWidth).padEnd(pathWidth);\n          const name = endpoint.suggested_name.substring(0, nameWidth).padEnd(nameWidth);\n          const idFragment = endpoint.suggested_id_fragment.substring(0, idFragmentWidth).padEnd(idFragmentWidth);\n          const symbol = endpoint.source_symbol.substring(0, symbolWidth).padEnd(symbolWidth);\n          const confidence = endpoint.confidence.toUpperCase().padEnd(confidenceWidth);\n          const file = endpoint.source_file.substring(0, fileWidth);\n\n          console.log(`${method} ${path} ${name} ${idFragment} ${symbol} ${confidence} ${ansis.dim(file)}`);\n        }\n\n        console.log(ansis.dim(\"\u2500\".repeat(135)));\n        console.log(ansis.dim(`Total: ${endpoints.length} endpoint(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Services subcommand - query for services/components in indexed project\n   */\n  analyzer\n    .command(\"services\")\n    .description(\"Query for services/components in the indexed project\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--layer <layer>\", \"Filter by layer (e.g., 'application')\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer services              # List all services\n  $ dr analyzer services --layer application\n  $ dr analyzer services --json       # Output as JSON`\n    )\n    .action(async (options) => {\n      try {\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Query for services\n        let services = await backend.services(projectRoot);\n\n        // Filter by layer if specified\n        if (options.layer) {\n          services = services.filter(s => s.suggested_layer === options.layer);\n        }\n\n        // JSON output\n        if (options.json) {\n          console.log(JSON.stringify(services, null, 2));\n          return;\n        }\n\n        // Table output\n        if (services.length === 0) {\n          console.log(ansis.yellow(\"No services found\"));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`Services (${services.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(120)));\n\n        // Print header\n        const nameWidth = 20;\n        const layerWidth = 15;\n        const typeWidth = 18;\n        const symbolWidth = 20;\n        const confidenceWidth = 12;\n        const fileWidth = 25;\n\n        console.log(\n          ansis.cyan(\n            `${\"Name\".padEnd(nameWidth)} ${\"Layer\".padEnd(layerWidth)} ${\"Type\".padEnd(typeWidth)} ${\"Symbol\".padEnd(symbolWidth)} ${\"Confidence\".padEnd(confidenceWidth)} File`\n          )\n        );\n        console.log(ansis.dim(\"\u2500\".repeat(120)));\n\n        // Print each service\n        for (const service of services) {\n          const name = service.suggested_name.substring(0, nameWidth).padEnd(nameWidth);\n          const layer = service.suggested_layer.substring(0, layerWidth).padEnd(layerWidth);\n          const type = service.suggested_element_type.substring(0, typeWidth).padEnd(typeWidth);\n          const symbol = service.source_symbol.substring(0, symbolWidth).padEnd(symbolWidth);\n          const confidence = service.confidence.toUpperCase().padEnd(confidenceWidth);\n          const file = service.source_file.substring(0, fileWidth);\n\n          console.log(`${name} ${layer} ${type} ${symbol} ${confidence} ${ansis.dim(file)}`);\n        }\n\n        console.log(ansis.dim(\"\u2500\".repeat(120)));\n        console.log(ansis.dim(`Total: ${services.length} service(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Datastores subcommand - query for datastores/databases inferred from code\n   */\n  analyzer\n    .command(\"datastores\")\n    .description(\"Query for datastores/databases inferred from code analysis\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer datastores        # List all inferred datastores\n  $ dr analyzer datastores --json # Output as JSON`\n    )\n    .action(async (options) => {\n      try {\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Query for datastores\n        const datastores = await backend.datastores(projectRoot);\n\n        // JSON output\n        if (options.json) {\n          console.log(JSON.stringify(datastores, null, 2));\n          return;\n        }\n\n        // Table output\n        if (datastores.length === 0) {\n          console.log(ansis.yellow(\"No datastores found\"));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`Datastores (${datastores.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(100)));\n\n        // Print each datastore\n        for (const ds of datastores) {\n          console.log(`  ${ansis.cyan(ds.suggested_name)}`);\n          console.log(`    Inferred from:`);\n          for (const evidence of ds.inferred_from) {\n            console.log(`      - ${evidence.source_file}: ${evidence.import_pattern}`);\n          }\n          if (ds.notes) {\n            console.log(`    Notes: ${ds.notes}`);\n          }\n          console.log(\"\");\n        }\n\n        console.log(ansis.dim(`Total: ${datastores.length} datastore(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Callers subcommand - query for callers of a specific symbol\n   */\n  analyzer\n    .command(\"callers <qualified-name>\")\n    .description(\"Query for callers of a specific function or symbol\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--depth <n>\", \"Maximum depth for call graph traversal (default: 3, max: 10)\", \"3\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer callers com.example.Service.handleRequest\n  $ dr analyzer callers com.example.Service.handleRequest --depth 5\n  $ dr analyzer callers com.example.Service.handleRequest --json`\n    )\n    .action(async (qualifiedName, options) => {\n      try {\n        // Validate depth\n        const depth = parseInt(options.depth, 10);\n        if (isNaN(depth) || depth < 1) {\n          throw new CLIError(\n            \"Invalid --depth value: must be a positive integer\",\n            ErrorCategory.USER\n          );\n        }\n\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Query for callers\n        const callers = await backend.callers(projectRoot, qualifiedName, depth);\n\n        // JSON output\n        if (options.json) {\n          console.log(JSON.stringify(callers, null, 2));\n          return;\n        }\n\n        // Table output\n        if (callers.length === 0) {\n          console.log(ansis.yellow(`No callers found for ${qualifiedName}`));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`Callers of ${ansis.cyan(qualifiedName)} (${callers.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(100)));\n\n        // Print each caller\n        for (const caller of callers) {\n          console.log(`  ${ansis.bold(caller.qualified_name)}`);\n          console.log(`    File: ${caller.source_file}`);\n          console.log(`    Symbol: ${caller.source_symbol}`);\n          console.log(`    Depth: ${caller.depth}`);\n          console.log(`    Edge: ${caller.edge_type}`);\n          console.log(\"\");\n        }\n\n        console.log(ansis.dim(`Total: ${callers.length} caller(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Callees subcommand - query for callees of a specific symbol\n   */\n  analyzer\n    .command(\"callees <qualified-name>\")\n    .description(\"Query for callees of a specific function or symbol\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--depth <n>\", \"Maximum depth for call graph traversal (default: 3, max: 10)\", \"3\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer callees com.example.Service.handleRequest\n  $ dr analyzer callees com.example.Service.handleRequest --depth 5\n  $ dr analyzer callees com.example.Service.handleRequest --json`\n    )\n    .action(async (qualifiedName, options) => {\n      try {\n        // Validate depth\n        const depth = parseInt(options.depth, 10);\n        if (isNaN(depth) || depth < 1) {\n          throw new CLIError(\n            \"Invalid --depth value: must be a positive integer\",\n            ErrorCategory.USER\n          );\n        }\n\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Query for callees\n        const callees = await backend.callees(projectRoot, qualifiedName, depth);\n\n        // JSON output\n        if (options.json) {\n          console.log(JSON.stringify(callees, null, 2));\n          return;\n        }\n\n        // Table output\n        if (callees.length === 0) {\n          console.log(ansis.yellow(`No callees found for ${qualifiedName}`));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`Callees of ${ansis.cyan(qualifiedName)} (${callees.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(100)));\n\n        // Print each callee\n        for (const callee of callees) {\n          console.log(`  ${ansis.bold(callee.qualified_name)}`);\n          console.log(`    File: ${callee.source_file}`);\n          console.log(`    Symbol: ${callee.source_symbol}`);\n          console.log(`    Depth: ${callee.depth}`);\n          console.log(`    Edge: ${callee.edge_type}`);\n          console.log(\"\");\n        }\n\n        console.log(ansis.dim(`Total: ${callees.length} callee(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Query subcommand - execute a raw query against the analyzer's graph\n   * Documented as an advanced escape hatch for graph queries (not recommended for scripting)\n   */\n  analyzer\n    .command(\"query <cypher>\")\n    .description(\"Execute a raw Cypher query against the analyzer graph (advanced escape hatch)\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--json\", \"Output as JSON (default format for query results)\")\n    .addHelpText(\n      \"before\",\n      `Advanced Escape Hatch: This command directly executes graph queries without validation or wrapping.\nUse for advanced analysis when standard commands don't meet your needs.\\n`\n    )\n    .addHelpText(\n      \"after\",\n      `\nQuery syntax depends on the analyzer backend (e.g., Cypher for graph analyzers).\nResults are always output as JSON.\n\nExamples:\n  $ dr analyzer query \"MATCH (n) RETURN n LIMIT 10\"\n  $ dr analyzer query \"MATCH (n:Service) RETURN n.name\"\n  $ dr analyzer query \"MATCH (n) RETURN n LIMIT 10\" --json`\n    )\n    .action(async (cypher, options) => {\n      try {\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Execute query\n        const result = await backend.query(projectRoot, cypher);\n\n        // Output format: JSON is the only reasonable format for arbitrary query results\n        // The --json flag is accepted for consistency, but JSON is always the output format\n        // (the flag currently has no effect as all query output is JSON)\n        if (options.json === false) {\n          // Explicit no-op: --json flag or its absence doesn't change behavior\n          // Query results are always output as JSON regardless of flag\n        }\n        console.log(JSON.stringify(result, null, 2));\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Verify subcommand - verify that graph-discovered routes align with model endpoints\n   */\n  analyzer\n    .command(\"verify\")\n    .description(\"Verify that graph-discovered routes align with model endpoints\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--layer <layer>\", \"Layer(s) to verify (can be used multiple times)\", (value, previous: string[] | undefined) => {\n      return previous ? [...previous, value] : [value];\n    })\n    .option(\"--json\", \"Output as JSON\")\n    .option(\"--format <format>\", \"Output format: text, json, markdown (default: text)\")\n    .option(\"--output <path>\", \"Write report to file\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer verify                       # Verify api layer (default)\n  $ dr analyzer verify --layer api           # Explicitly specify api layer\n  $ dr analyzer verify --json                # Output as JSON to stdout\n  $ dr analyzer verify --format markdown     # Output as Markdown to stdout\n  $ dr analyzer verify --output report.json  # Save report to file (format inferred as JSON)\n  $ dr analyzer verify --output report.md    # Save report as Markdown`\n    )\n    .action(async (options) => {\n      try {\n        // Determine output format from --json flag, --format flag, or --output file extension\n        let format: \"text\" | \"json\" | \"markdown\" = \"text\";\n        if (options.json) {\n          // Warn if both --json and --format are provided\n          if (options.format) {\n            console.warn(ansis.yellow(`\u26A0 Both --json and --format \"${options.format}\" were provided. Using --json format (--format is ignored).`));\n          }\n          format = \"json\";\n        } else if (options.format) {\n          const validFormats = [\"text\", \"json\", \"markdown\"];\n          if (!validFormats.includes(options.format)) {\n            throw new CLIError(\n              `Invalid format: \"${options.format}\". Valid values are: ${validFormats.join(\", \")}.`,\n              ErrorCategory.USER\n            );\n          }\n          format = options.format as \"text\" | \"json\" | \"markdown\";\n        } else if (options.output) {\n          const ext = path.extname(options.output).toLowerCase();\n          if (ext === \".json\") {\n            format = \"json\";\n          } else if (ext === \".md\") {\n            format = \"markdown\";\n          } else if (ext) {\n            // Warn if file has unrecognized extension\n            console.warn(ansis.yellow(`\u26A0 Unrecognized file extension \"${ext}\" in --output. Using text format by default.`));\n          }\n        }\n\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Validate layers - only api is supported in v1\n        const requestedLayers = options.layer || [\"api\"];\n        const apiLayers = requestedLayers.filter((layer: string) => layer === \"api\");\n        const nonApiLayers = requestedLayers.filter((layer: string) => layer !== \"api\");\n\n        // Report non-api layers as not available\n        for (const layer of nonApiLayers) {\n          console.log(ansis.dim(`No verification available for layer '${layer}'`));\n        }\n\n        // If no api layers to verify, exit cleanly\n        if (apiLayers.length === 0) {\n          return;\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Execute verification with changeset awareness enabled by default\n        const report = await backend.verify(projectRoot, {\n          layers: apiLayers,\n          changesetAware: true,\n        });\n\n        const formatted = formatVerifyReport(report, { format });\n\n        // Write to file if --output specified\n        if (options.output) {\n          const outputPath = path.resolve(options.output);\n          await fs.writeFile(outputPath, formatted, \"utf-8\");\n          console.log(ansis.green(`\u2713 Report written to ${outputPath}`));\n          return;\n        }\n\n        // Print to stdout\n        console.log(formatted);\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n}\n"],
-  "mappings": 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+  "sourcesContent": ["/**\n * Analyzer Commands - CLI surface for analyzer discovery, status, indexing, and querying\n *\n * Implements ten subcommands:\n * - discover: Scan for installed analyzers and select active analyzer\n * - status: Report analyzer detection and project index state\n * - index: Index the current project with the active analyzer\n * - endpoints: List discovered API endpoints from indexed project\n * - services: Query for services/components in the indexed project\n * - datastores: Query for datastores/databases inferred from code analysis\n * - callers: Query for callers of a specific function or symbol\n * - callees: Query for callees of a specific function or symbol\n * - query: Execute a raw query against the analyzer's graph\n * - verify: Verify that graph-discovered routes align with model endpoints\n */\n\nimport { Command } from \"commander\";\nimport { intro, outro, select, isCancel } from \"@clack/prompts\";\nimport ansis from \"ansis\";\nimport { promises as fs } from \"fs\";\nimport * as path from \"path\";\nimport { AnalyzerRegistry } from \"../analyzers/registry.js\";\nimport { MappingLoader } from \"../analyzers/mapping-loader.js\";\nimport { readSession, writeSession, writeStatus, readIndexMeta } from \"../analyzers/session-state.js\";\nimport { CLIError, ModelNotFoundError, ErrorCategory, categorizeError } from \"../utils/errors.js\";\nimport { findProjectRoot } from \"../utils/project-paths.js\";\nimport { performDiscover } from \"./discover-logic.js\";\nimport { formatVerifyReport } from \"../export/verify-formatters.js\";\nimport type { SessionState, AnalyzerStatus } from \"../analyzers/types.js\";\n\n/**\n * Register all analyzer subcommands\n */\nexport function analyzerCommands(program: Command): void {\n  const analyzer = program.command(\"analyzer\").description(\"Manage analyzer discovery and indexing\");\n\n  /**\n   * Discover subcommand - scan for installed analyzers\n   *\n   * Iterates through all registered analyzers, detects which are installed,\n   * and prompts for selection if needed. Persists selection to session.json.\n   */\n  analyzer\n    .command(\"discover\")\n    .description(\"Discover and select an analyzer\")\n    .option(\"--json\", \"Output as JSON\")\n    .option(\"--reselect\", \"Force re-selection even if analyzer already selected\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer discover                    # Scan and select analyzer\n  $ dr analyzer discover --reselect         # Force re-selection\n  $ dr analyzer discover --json             # Output discovery results as JSON`\n    )\n    .action(async (options) => {\n      // Merge global --json flag if local one isn't set\n      const jsonMode = options.json ?? program.opts().json;\n      try {\n        // Resolve project root for consistent session state path\n        const projectRoot = (await findProjectRoot()) || process.cwd();\n\n        // Initialize registry\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n\n        // Check if session already exists and not reselecting\n        if (!options.reselect) {\n          const session = await readSession(projectRoot);\n          if (session) {\n            if (jsonMode) {\n              // JSON mode: return discovery results with existing session as selected\n              const analyzerNames = await registry.getAnalyzerNames();\n              const analyzerOptions: any[] = [];\n\n              for (const name of analyzerNames) {\n                try {\n                  const backend = await registry.getAnalyzer(name);\n                  if (!backend) continue;\n                  const detection = await backend.detect();\n                  const mapper = await MappingLoader.load(name);\n                  const metadata = mapper.getAnalyzerMetadata();\n                  analyzerOptions.push({ backend, detection, metadata });\n                } catch (error) {\n                  // Log error but continue discovering other analyzers\n                  const errorMsg = error instanceof Error ? error.message : String(error);\n                  console.error(`Failed to discover analyzer \"${name}\": ${errorMsg}`);\n                }\n              }\n\n              const installed = analyzerOptions.filter((a) => a.detection.installed);\n              const discoveryResult: any = {\n                found: analyzerOptions.map((a) => ({\n                  name: a.backend.name,\n                  display_name: a.backend.displayName,\n                  description: a.metadata?.description || \"\",\n                  homepage: a.metadata?.homepage || \"\",\n                  installed: a.detection.installed,\n                })),\n                installed_count: installed.length,\n                selected: session.active_analyzer,\n              };\n\n              console.log(JSON.stringify(discoveryResult, null, 2));\n              return;\n            } else {\n              // Text mode: show message and return\n              console.log(\n                ansis.green(`\u2713 Using analyzer: ${session.active_analyzer} (use --reselect to change)`)\n              );\n              return;\n            }\n          }\n        }\n\n        // Run core discover logic\n        const discoverResult = await performDiscover(registry, {\n          json: jsonMode,\n          reselect: options.reselect,\n          isTTY: process.stdin.isTTY,\n        });\n\n        const { discoveryResult, installed, analyzerOptions, selectedAnalyzer, shouldWriteSession } = discoverResult;\n\n        // JSON output mode\n        if (jsonMode) {\n          // Only write session if an analyzer was actually selected\n          // (selectedAnalyzer is only set if analyzers are installed)\n          if (selectedAnalyzer && shouldWriteSession) {\n            const state: SessionState = {\n              active_analyzer: selectedAnalyzer,\n              selected_at: new Date().toISOString(),\n            };\n            await writeSession(state, projectRoot);\n            discoveryResult.selected = selectedAnalyzer;\n          }\n\n          console.log(JSON.stringify(discoveryResult, null, 2));\n          return;\n        }\n\n        // Text output mode - show all analyzers with install status\n        if (installed.length === 0) {\n          intro(ansis.blue(\"\uD83D\uDCCA Analyzer Discovery\"));\n          console.log(\"\");\n          console.log(ansis.yellow(\"No analyzers installed. Install one of the following:\"));\n          console.log(\"\");\n\n          for (const opt of analyzerOptions) {\n            const name = ansis.bold(opt.backend.displayName);\n            const homepage = opt.metadata?.homepage || \"(homepage not available)\";\n            console.log(`  ${name} ${ansis.dim(`(${homepage})`)}`);\n          }\n\n          console.log(\"\");\n          outro(ansis.dim(\"To install: follow the links above or use your package manager\"));\n\n          return;\n        }\n\n        // Prompt for selection\n        intro(ansis.blue(\"\uD83D\uDCCA Analyzer Selection\"));\n\n        if (process.stdin.isTTY) {\n          const selectedName = await select({\n            message: \"Select an analyzer\",\n            options: installed.map((a) => ({\n              value: a.backend.name,\n              label: a.backend.displayName,\n              hint: a.metadata?.description || \"\",\n            })),\n          });\n\n          if (isCancel(selectedName)) {\n            outro(ansis.dim(\"Cancelled\"));\n            return;\n          }\n\n          // Write session\n          const state: SessionState = {\n            active_analyzer: selectedName as string,\n            selected_at: new Date().toISOString(),\n          };\n          await writeSession(state, projectRoot);\n\n          outro(\n            ansis.green(\n              `\u2713 Selected analyzer: ${selectedName} (saved to .dr/analyzers/session.json)`\n            )\n          );\n        } else {\n          // Non-TTY: auto-select first installed analyzer\n          if (selectedAnalyzer) {\n            const state: SessionState = {\n              active_analyzer: selectedAnalyzer,\n              selected_at: new Date().toISOString(),\n            };\n            await writeSession(state, projectRoot);\n\n            console.log(\n              ansis.green(`\u2713 Selected analyzer: ${selectedAnalyzer} (non-interactive mode)`)\n            );\n            outro(ansis.dim(\"Saved to .dr/analyzers/session.json\"));\n          }\n        }\n      } catch (error) {\n        if (error instanceof CLIError) throw error;\n\n        const category = categorizeError(error);\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          category\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Status subcommand - report analyzer detection and project index state\n   */\n  analyzer\n    .command(\"status\")\n    .description(\"Check analyzer detection and project index status\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer status              # Show status of active analyzer\n  $ dr analyzer status --name cbm   # Show status of specific analyzer\n  $ dr analyzer status --json       # Output as JSON`\n    )\n    .action(async (options) => {\n      // Merge global --json flag if local one isn't set\n      const jsonMode = options.json ?? program.opts().json;\n      try {\n        // Resolve project root for consistent session state path\n        const projectRoot = (await findProjectRoot()) || process.cwd();\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND,\n            [\"Check the analyzer name with `dr analyzer discover`\"]\n          );\n        }\n\n        // Get status (use project root from findProjectRoot for backend operations)\n        const actualProjectRoot = await findProjectRoot();\n        let status: AnalyzerStatus;\n        if (actualProjectRoot) {\n          status = await backend.status(actualProjectRoot);\n        } else {\n          const detected = await backend.detect();\n          status = {\n            detected,\n            indexed: false,\n            fresh: false,\n          } as AnalyzerStatus;\n        }\n\n        // JSON output\n        if (jsonMode) {\n          console.log(JSON.stringify(status, null, 2));\n          if (actualProjectRoot) {\n            await writeStatus(status, actualProjectRoot, analyzerName);\n          }\n          return;\n        }\n\n        // Text output\n        console.log(\"\");\n        console.log(ansis.bold(\"Analyzer Status\"));\n        console.log(ansis.dim(\"\u2500\".repeat(40)));\n\n        console.log(\n          `Installed: ${status.detected.installed ? ansis.green(\"\u2713 Yes\") : ansis.red(\"\u2717 No\")}`\n        );\n\n        if (status.detected.binary_path) {\n          console.log(`Binary: ${ansis.dim(status.detected.binary_path)}`);\n        }\n\n        if (status.detected.version) {\n          console.log(`Version: ${ansis.dim(status.detected.version)}`);\n        }\n\n        // Only show MCP and contract info if analyzer is installed\n        if (status.detected.installed) {\n          console.log(\n            `MCP Registered: ${status.detected.mcp_registered ? ansis.green(\"\u2713 Yes\") : ansis.yellow(\"\u2717 No\")}`\n          );\n\n          console.log(\n            `Contract Valid: ${status.detected.contract_ok ? ansis.green(\"\u2713 Yes\") : ansis.yellow(\"\u2717 No\")}`\n          );\n        }\n\n        if (actualProjectRoot) {\n          console.log(\n            `Indexed: ${status.indexed ? ansis.green(\"\u2713 Yes\") : ansis.yellow(\"\u2717 No\")}`\n          );\n\n          if (status.indexed) {\n            console.log(\n              `Fresh: ${status.fresh ? ansis.green(\"\u2713 Yes\") : ansis.yellow(\"\u2717 No (use --force to reindex)\")}`\n            );\n\n            if (status.last_indexed) {\n              console.log(`Last indexed: ${ansis.dim(status.last_indexed)}`);\n            }\n          } else {\n            console.log(ansis.dim(\"Run `dr analyzer index` to index the project\"));\n          }\n        }\n\n        console.log(\"\");\n\n        // Write status file\n        if (actualProjectRoot) {\n          await writeStatus(status, actualProjectRoot, analyzerName);\n        }\n      } catch (error) {\n        if (error instanceof CLIError) throw error;\n\n        const category = categorizeError(error);\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          category\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Index subcommand - index the current project\n   */\n  analyzer\n    .command(\"index\")\n    .description(\"Index the current project with the analyzer\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--force\", \"Force re-indexing even if index is fresh\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer index              # Index with active analyzer\n  $ dr analyzer index --force      # Force re-index\n  $ dr analyzer index --name cbm   # Index with specific analyzer`\n    )\n    .action(async (options) => {\n      try {\n        // Find project root - required for indexing\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND,\n            [\"Check the analyzer name with `dr analyzer discover`\"]\n          );\n        }\n\n        // Check if installed\n        const detection = await backend.detect();\n        if (!detection.installed) {\n          // Get analyzer metadata for suggestions\n          const mapper = await MappingLoader.load(analyzerName);\n          const metadata = mapper.getAnalyzerMetadata();\n          const homepageUrl = metadata?.homepage || \"https://github.com/search?q=codebase-memory\";\n\n          throw new CLIError(\n            `Analyzer not installed: ${analyzerName}`,\n            ErrorCategory.USER,\n            [\n              \"Run `dr analyzer discover` to find available analyzers and installation instructions\",\n              `Visit: ${homepageUrl}`,\n            ]\n          );\n        }\n\n        // Index the project\n        console.log(`Indexing project with ${analyzerName}...`);\n        const result = await backend.index(projectRoot, { force: options.force });\n\n        console.log(ansis.green(`\u2713 Indexing complete`));\n        console.log(`  Nodes: ${result.node_count}`);\n        console.log(`  Edges: ${result.edge_count}`);\n        console.log(`  Git HEAD: ${result.git_head}`);\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          ErrorCategory.SYSTEM\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Endpoints subcommand - list API endpoints from indexed project\n   */\n  analyzer\n    .command(\"endpoints\")\n    .description(\"List discovered API endpoints from indexed project\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer endpoints              # List endpoints from active analyzer\n  $ dr analyzer endpoints --json       # Output as JSON\n  $ dr analyzer endpoints --name cbm   # List endpoints from specific analyzer`\n    )\n    .action(async (options) => {\n      // Merge global --json flag if local one isn't set\n      const jsonMode = options.json ?? program.opts().json;\n      try {\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const status = await backend.status(projectRoot);\n        if (!status.indexed) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` to index the project first\"]\n          );\n        }\n\n        // Query for endpoints\n        const endpoints = await backend.endpoints(projectRoot);\n\n        // JSON output\n        if (jsonMode) {\n          console.log(JSON.stringify(endpoints, null, 2));\n          return;\n        }\n\n        // Table output\n        if (endpoints.length === 0) {\n          console.log(ansis.yellow(\"No endpoints found\"));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`API Endpoints (${endpoints.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(135)));\n\n        // Print header\n        const methodWidth = 8;\n        const pathWidth = 20;\n        const nameWidth = 18;\n        const idFragmentWidth = 18;\n        const symbolWidth = 18;\n        const confidenceWidth = 12;\n        const fileWidth = 25;\n\n        console.log(\n          ansis.cyan(\n            `${\"Method\".padEnd(methodWidth)} ${\"Path\".padEnd(pathWidth)} ${\"Name\".padEnd(nameWidth)} ${\"ID Fragment\".padEnd(idFragmentWidth)} ${\"Symbol\".padEnd(symbolWidth)} ${\"Confidence\".padEnd(confidenceWidth)} File`\n          )\n        );\n        console.log(ansis.dim(\"\u2500\".repeat(135)));\n\n        // Print each endpoint\n        for (const endpoint of endpoints) {\n          const method = endpoint.http_method.padEnd(methodWidth);\n          const path = endpoint.http_path.substring(0, pathWidth).padEnd(pathWidth);\n          const name = endpoint.suggested_name.substring(0, nameWidth).padEnd(nameWidth);\n          const idFragment = endpoint.suggested_id_fragment.substring(0, idFragmentWidth).padEnd(idFragmentWidth);\n          const symbol = endpoint.source_symbol.substring(0, symbolWidth).padEnd(symbolWidth);\n          const confidence = endpoint.confidence.toUpperCase().padEnd(confidenceWidth);\n          const file = endpoint.source_file.substring(0, fileWidth);\n\n          console.log(`${method} ${path} ${name} ${idFragment} ${symbol} ${confidence} ${ansis.dim(file)}`);\n        }\n\n        console.log(ansis.dim(\"\u2500\".repeat(135)));\n        console.log(ansis.dim(`Total: ${endpoints.length} endpoint(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Services subcommand - query for services/components in indexed project\n   */\n  analyzer\n    .command(\"services\")\n    .description(\"Query for services/components in the indexed project\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--layer <layer>\", \"Filter by layer (e.g., 'application')\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer services              # List all services\n  $ dr analyzer services --layer application\n  $ dr analyzer services --json       # Output as JSON`\n    )\n    .action(async (options) => {\n      // Merge global --json flag if local one isn't set\n      const jsonMode = options.json ?? program.opts().json;\n      try {\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Query for services\n        let services = await backend.services(projectRoot);\n\n        // Filter by layer if specified\n        if (options.layer) {\n          services = services.filter(s => s.suggested_layer === options.layer);\n        }\n\n        // JSON output\n        if (jsonMode) {\n          console.log(JSON.stringify(services, null, 2));\n          return;\n        }\n\n        // Table output\n        if (services.length === 0) {\n          console.log(ansis.yellow(\"No services found\"));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`Services (${services.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(120)));\n\n        // Print header\n        const nameWidth = 20;\n        const layerWidth = 15;\n        const typeWidth = 18;\n        const symbolWidth = 20;\n        const confidenceWidth = 12;\n        const fileWidth = 25;\n\n        console.log(\n          ansis.cyan(\n            `${\"Name\".padEnd(nameWidth)} ${\"Layer\".padEnd(layerWidth)} ${\"Type\".padEnd(typeWidth)} ${\"Symbol\".padEnd(symbolWidth)} ${\"Confidence\".padEnd(confidenceWidth)} File`\n          )\n        );\n        console.log(ansis.dim(\"\u2500\".repeat(120)));\n\n        // Print each service\n        for (const service of services) {\n          const name = service.suggested_name.substring(0, nameWidth).padEnd(nameWidth);\n          const layer = service.suggested_layer.substring(0, layerWidth).padEnd(layerWidth);\n          const type = service.suggested_element_type.substring(0, typeWidth).padEnd(typeWidth);\n          const symbol = service.source_symbol.substring(0, symbolWidth).padEnd(symbolWidth);\n          const confidence = service.confidence.toUpperCase().padEnd(confidenceWidth);\n          const file = service.source_file.substring(0, fileWidth);\n\n          console.log(`${name} ${layer} ${type} ${symbol} ${confidence} ${ansis.dim(file)}`);\n        }\n\n        console.log(ansis.dim(\"\u2500\".repeat(120)));\n        console.log(ansis.dim(`Total: ${services.length} service(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Datastores subcommand - query for datastores/databases inferred from code\n   */\n  analyzer\n    .command(\"datastores\")\n    .description(\"Query for datastores/databases inferred from code analysis\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer datastores        # List all inferred datastores\n  $ dr analyzer datastores --json # Output as JSON`\n    )\n    .action(async (options) => {\n      // Merge global --json flag if local one isn't set\n      const jsonMode = options.json ?? program.opts().json;\n      try {\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Query for datastores\n        const datastores = await backend.datastores(projectRoot);\n\n        // JSON output\n        if (jsonMode) {\n          console.log(JSON.stringify(datastores, null, 2));\n          return;\n        }\n\n        // Table output\n        if (datastores.length === 0) {\n          console.log(ansis.yellow(\"No datastores found\"));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`Datastores (${datastores.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(100)));\n\n        // Print each datastore\n        for (const ds of datastores) {\n          console.log(`  ${ansis.cyan(ds.suggested_name)}`);\n          console.log(`    Inferred from:`);\n          for (const evidence of ds.inferred_from) {\n            console.log(`      - ${evidence.source_file}: ${evidence.import_pattern}`);\n          }\n          if (ds.notes) {\n            console.log(`    Notes: ${ds.notes}`);\n          }\n          console.log(\"\");\n        }\n\n        console.log(ansis.dim(`Total: ${datastores.length} datastore(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Callers subcommand - query for callers of a specific symbol\n   */\n  analyzer\n    .command(\"callers <qualified-name>\")\n    .description(\"Query for callers of a specific function or symbol\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--depth <n>\", \"Maximum depth for call graph traversal (default: 3, max: 10)\", \"3\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer callers com.example.Service.handleRequest\n  $ dr analyzer callers com.example.Service.handleRequest --depth 5\n  $ dr analyzer callers com.example.Service.handleRequest --json`\n    )\n    .action(async (qualifiedName, options) => {\n      // Merge global --json flag if local one isn't set\n      const jsonMode = options.json ?? program.opts().json;\n      try {\n        // Validate depth\n        const depth = parseInt(options.depth, 10);\n        if (isNaN(depth) || depth < 1) {\n          throw new CLIError(\n            \"Invalid --depth value: must be a positive integer\",\n            ErrorCategory.USER\n          );\n        }\n\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Query for callers\n        const callers = await backend.callers(projectRoot, qualifiedName, depth);\n\n        // JSON output\n        if (jsonMode) {\n          console.log(JSON.stringify(callers, null, 2));\n          return;\n        }\n\n        // Table output\n        if (callers.length === 0) {\n          console.log(ansis.yellow(`No callers found for ${qualifiedName}`));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`Callers of ${ansis.cyan(qualifiedName)} (${callers.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(100)));\n\n        // Print each caller\n        for (const caller of callers) {\n          console.log(`  ${ansis.bold(caller.qualified_name)}`);\n          console.log(`    File: ${caller.source_file}`);\n          console.log(`    Symbol: ${caller.source_symbol}`);\n          console.log(`    Depth: ${caller.depth}`);\n          console.log(`    Edge: ${caller.edge_type}`);\n          console.log(\"\");\n        }\n\n        console.log(ansis.dim(`Total: ${callers.length} caller(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Callees subcommand - query for callees of a specific symbol\n   */\n  analyzer\n    .command(\"callees <qualified-name>\")\n    .description(\"Query for callees of a specific function or symbol\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--depth <n>\", \"Maximum depth for call graph traversal (default: 3, max: 10)\", \"3\")\n    .option(\"--json\", \"Output as JSON\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer callees com.example.Service.handleRequest\n  $ dr analyzer callees com.example.Service.handleRequest --depth 5\n  $ dr analyzer callees com.example.Service.handleRequest --json`\n    )\n    .action(async (qualifiedName, options) => {\n      // Merge global --json flag if local one isn't set\n      const jsonMode = options.json ?? program.opts().json;\n      try {\n        // Validate depth\n        const depth = parseInt(options.depth, 10);\n        if (isNaN(depth) || depth < 1) {\n          throw new CLIError(\n            \"Invalid --depth value: must be a positive integer\",\n            ErrorCategory.USER\n          );\n        }\n\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Query for callees\n        const callees = await backend.callees(projectRoot, qualifiedName, depth);\n\n        // JSON output\n        if (jsonMode) {\n          console.log(JSON.stringify(callees, null, 2));\n          return;\n        }\n\n        // Table output\n        if (callees.length === 0) {\n          console.log(ansis.yellow(`No callees found for ${qualifiedName}`));\n          return;\n        }\n\n        console.log(\"\");\n        console.log(ansis.bold(`Callees of ${ansis.cyan(qualifiedName)} (${callees.length} found):`));\n        console.log(ansis.dim(\"\u2500\".repeat(100)));\n\n        // Print each callee\n        for (const callee of callees) {\n          console.log(`  ${ansis.bold(callee.qualified_name)}`);\n          console.log(`    File: ${callee.source_file}`);\n          console.log(`    Symbol: ${callee.source_symbol}`);\n          console.log(`    Depth: ${callee.depth}`);\n          console.log(`    Edge: ${callee.edge_type}`);\n          console.log(\"\");\n        }\n\n        console.log(ansis.dim(`Total: ${callees.length} callee(s)`));\n        console.log(\"\");\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Query subcommand - execute a raw query against the analyzer's graph\n   * Documented as an advanced escape hatch for graph queries (not recommended for scripting)\n   */\n  analyzer\n    .command(\"query <cypher>\")\n    .description(\"Execute a raw Cypher query against the analyzer graph (advanced escape hatch)\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--json\", \"Output as JSON (default format for query results)\")\n    .addHelpText(\n      \"before\",\n      `Advanced Escape Hatch: This command directly executes graph queries without validation or wrapping.\nUse for advanced analysis when standard commands don't meet your needs.\\n`\n    )\n    .addHelpText(\n      \"after\",\n      `\nQuery syntax depends on the analyzer backend (e.g., Cypher for graph analyzers).\nResults are always output as JSON.\n\nExamples:\n  $ dr analyzer query \"MATCH (n) RETURN n LIMIT 10\"\n  $ dr analyzer query \"MATCH (n:Service) RETURN n.name\"\n  $ dr analyzer query \"MATCH (n) RETURN n LIMIT 10\" --json`\n    )\n    .action(async (cypher, options) => {\n      try {\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Execute query\n        const result = await backend.query(projectRoot, cypher);\n\n        // Output format: JSON is the only reasonable format for arbitrary query results\n        // The --json flag is accepted for consistency, but JSON is always the output format\n        // (the flag currently has no effect as all query output is JSON)\n        if (options.json === false) {\n          // Explicit no-op: --json flag or its absence doesn't change behavior\n          // Query results are always output as JSON regardless of flag\n        }\n        console.log(JSON.stringify(result, null, 2));\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n\n  /**\n   * Verify subcommand - verify that graph-discovered routes align with model endpoints\n   */\n  analyzer\n    .command(\"verify\")\n    .description(\"Verify that graph-discovered routes align with model endpoints\")\n    .option(\"--name <n>\", \"Analyzer name (defaults to active from session.json)\")\n    .option(\"--layer <layer>\", \"Layer(s) to verify (can be used multiple times)\", (value, previous: string[] | undefined) => {\n      return previous ? [...previous, value] : [value];\n    })\n    .option(\"--json\", \"Output as JSON\")\n    .option(\"--format <format>\", \"Output format: text, json, markdown (default: text)\")\n    .option(\"--output <path>\", \"Write report to file\")\n    .addHelpText(\n      \"after\",\n      `\nExamples:\n  $ dr analyzer verify                       # Verify api layer (default)\n  $ dr analyzer verify --layer api           # Explicitly specify api layer\n  $ dr analyzer verify --json                # Output as JSON to stdout\n  $ dr analyzer verify --format markdown     # Output as Markdown to stdout\n  $ dr analyzer verify --output report.json  # Save report to file (format inferred as JSON)\n  $ dr analyzer verify --output report.md    # Save report as Markdown`\n    )\n    .action(async (options) => {\n      // Merge global --json flag if local one isn't set\n      const jsonMode = options.json ?? program.opts().json;\n      try {\n        // Determine output format from --json flag, --format flag, or --output file extension\n        let format: \"text\" | \"json\" | \"markdown\" = \"text\";\n        if (jsonMode) {\n          // Warn if both --json and --format are provided\n          if (options.format) {\n            console.warn(ansis.yellow(`\u26A0 Both --json and --format \"${options.format}\" were provided. Using --json format (--format is ignored).`));\n          }\n          format = \"json\";\n        } else if (options.format) {\n          const validFormats = [\"text\", \"json\", \"markdown\"];\n          if (!validFormats.includes(options.format)) {\n            throw new CLIError(\n              `Invalid format: \"${options.format}\". Valid values are: ${validFormats.join(\", \")}.`,\n              ErrorCategory.USER\n            );\n          }\n          format = options.format as \"text\" | \"json\" | \"markdown\";\n        } else if (options.output) {\n          const ext = path.extname(options.output).toLowerCase();\n          if (ext === \".json\") {\n            format = \"json\";\n          } else if (ext === \".md\") {\n            format = \"markdown\";\n          } else if (ext) {\n            // Warn if file has unrecognized extension\n            console.warn(ansis.yellow(`\u26A0 Unrecognized file extension \"${ext}\" in --output. Using text format by default.`));\n          }\n        }\n\n        // Find project root\n        const projectRoot = await findProjectRoot();\n        if (!projectRoot) {\n          throw new ModelNotFoundError();\n        }\n\n        // Validate layers - only api is supported in v1\n        const requestedLayers = options.layer || [\"api\"];\n        const apiLayers = requestedLayers.filter((layer: string) => layer === \"api\");\n        const nonApiLayers = requestedLayers.filter((layer: string) => layer !== \"api\");\n\n        // Report non-api layers as not available\n        for (const layer of nonApiLayers) {\n          console.log(ansis.dim(`No verification available for layer '${layer}'`));\n        }\n\n        // If no api layers to verify, exit cleanly\n        if (apiLayers.length === 0) {\n          return;\n        }\n\n        // Resolve analyzer name\n        let analyzerName = options.name;\n        if (!analyzerName) {\n          const session = await readSession(projectRoot);\n          if (!session) {\n            throw new CLIError(\n              \"No analyzer selected. Run `dr analyzer discover` first.\",\n              ErrorCategory.USER\n            );\n          }\n          analyzerName = session.active_analyzer;\n        }\n\n        // Get analyzer\n        const registry = AnalyzerRegistry.getInstance();\n        await registry.initialize();\n        const backend = await registry.getAnalyzer(analyzerName);\n\n        if (!backend) {\n          throw new CLIError(\n            `Analyzer not found: ${analyzerName}`,\n            ErrorCategory.NOT_FOUND\n          );\n        }\n\n        // Check if project is indexed\n        const indexMeta = await readIndexMeta(projectRoot, analyzerName);\n        if (!indexMeta) {\n          throw new CLIError(\n            \"Project not indexed\",\n            ErrorCategory.USER,\n            [\"Run `dr analyzer index` first\"]\n          );\n        }\n\n        // Execute verification with changeset awareness enabled by default\n        const report = await backend.verify(projectRoot, {\n          layers: apiLayers,\n          changesetAware: true,\n        });\n\n        const formatted = formatVerifyReport(report, { format });\n\n        // Write to file if --output specified\n        if (options.output) {\n          const outputPath = path.resolve(options.output);\n          await fs.writeFile(outputPath, formatted, \"utf-8\");\n          console.log(ansis.green(`\u2713 Report written to ${outputPath}`));\n          return;\n        }\n\n        // Print to stdout\n        console.log(formatted);\n      } catch (error) {\n        if (error instanceof CLIError || error instanceof ModelNotFoundError) throw error;\n        const cliError = new CLIError(\n          error instanceof Error ? error.message : String(error),\n          categorizeError(error)\n        );\n        if (error instanceof Error) {\n          cliError.cause = error;\n        }\n        throw cliError;\n      }\n    });\n}\n"],
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   "names": ["analyzerOptions", "installed", "discoveryResult", "path"]
 }

package/dist/commands/audit.js

@@ -12,7 +12,7 @@ async function auditCommand(options) {
     const validAuditTypes = ["relationships", "nodes", "all"];
     if (options.type && !validAuditTypes.includes(options.type))
       throw new CLIError(`Invalid audit type: "${options.type}". Valid values are: ${validAuditTypes.join(", ")}.`);
-    const auditType = options.type ?? "relationships";
+    const auditType = options.type ?? "relationships", projectRoot = options.projectRoot ?? process.cwd();
     let format = "text";
     if (options.format)
       format = options.format;
@@ -25,7 +25,7 @@ async function auditCommand(options) {
       const report = await new ModelNodeAuditOrchestrator().runAudit({
         layer: options.layer,
         verbose: options.verbose,
-        projectRoot: process.cwd()
+        projectRoot
       });
       output = formatNodeAuditReport(report, { format, verbose: options.verbose });
     } else if (auditType === "all") {
@@ -34,12 +34,12 @@ async function auditCommand(options) {
           layer: options.layer,
           verbose: options.verbose,
           debug: options.debug,
-          projectRoot: process.cwd()
+          projectRoot
         }),
         new ModelNodeAuditOrchestrator().runAudit({
           layer: options.layer,
           verbose: options.verbose,
-          projectRoot: process.cwd()
+          projectRoot
         })
       ]);
       let relOutput, nodeOutput;
@@ -57,7 +57,7 @@ async function auditCommand(options) {
         layer: options.layer,
         verbose: options.verbose,
         debug: options.debug,
-        projectRoot: process.cwd()
+        projectRoot
       });
       if (output = formatAuditReport(report, { format, verbose: options.verbose }), options.saveSnapshot) {
         options.debug && console.log(ansis.dim("Saving audit snapshot..."));
@@ -66,7 +66,7 @@ async function auditCommand(options) {
       }
     }
     if (options.output) {
-      const outputPath = path.resolve(process.cwd(), options.output), outputDir = path.dirname(outputPath);
+      const outputPath = path.resolve(projectRoot, options.output), outputDir = path.dirname(outputPath);
       await ensureDir(outputDir), await writeFile(outputPath, output), console.log(ansis.green(`\u2713 Audit report written to ${options.output}`));
     } else
       console.log(output);

package/dist/commands/audit.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/commands/audit.ts"],
-  "sourcesContent": ["/**\n * Audit command - Analyze relationship coverage, gaps, duplicates, and balance\n */\n\nimport ansis from \"ansis\";\nimport { writeFile, ensureDir } from \"../utils/file-io.js\";\nimport { getErrorMessage, CLIError } from \"../utils/errors.js\";\nimport {\n  formatAuditReport,\n  formatNodeAuditReport,\n  AuditReportFormat,\n} from \"../export/audit-formatters.js\";\nimport { SnapshotStorage } from \"../audit/snapshot-storage.js\";\nimport { ModelAuditOrchestrator } from \"../audit/relationships/model/orchestrator.js\";\nimport { ModelNodeAuditOrchestrator } from \"../audit/nodes/model/orchestrator.js\";\nimport { formatDate } from \"../utils/date-utils.js\";\nimport path from \"path\";\n\nexport type AuditType = \"relationships\" | \"nodes\" | \"all\";\n\nexport interface AuditOptions {\n  layer?: string;\n  type?: AuditType;\n  format?: AuditReportFormat;\n  output?: string;\n  verbose?: boolean;\n  debug?: boolean;\n  saveSnapshot?: boolean;\n}\n\n/**\n * Run the audit command\n */\nexport async function auditCommand(options: AuditOptions): Promise<void> {\n  try {\n    const validAuditTypes: AuditType[] = [\"relationships\", \"nodes\", \"all\"];\n    if (options.type && !validAuditTypes.includes(options.type)) {\n      throw new CLIError(\n        `Invalid audit type: \"${options.type}\". Valid values are: ${validAuditTypes.join(\", \")}.`\n      );\n    }\n    const auditType: AuditType = options.type ?? \"relationships\";\n\n    // Determine output format\n    let format: AuditReportFormat = \"text\";\n    if (options.format) {\n      format = options.format;\n    } else if (options.output) {\n      const ext = path.extname(options.output).toLowerCase();\n      if (ext === \".json\") {\n        format = \"json\";\n      } else if (ext === \".md\") {\n        format = \"markdown\";\n      }\n    }\n\n    let output: string;\n\n    if (auditType === \"nodes\") {\n      // Node type audit - analyzes element types in the model\n      const orchestrator = new ModelNodeAuditOrchestrator();\n      const report = await orchestrator.runAudit({\n        layer: options.layer,\n        verbose: options.verbose,\n        projectRoot: process.cwd(),\n      });\n\n      output = formatNodeAuditReport(report, { format, verbose: options.verbose });\n    } else if (auditType === \"all\") {\n      // Combined audit - run both independently; one failing does not suppress the other\n      const [relResult, nodeResult] = await Promise.allSettled([\n        new ModelAuditOrchestrator().runAudit({\n          layer: options.layer,\n          verbose: options.verbose,\n          debug: options.debug,\n          projectRoot: process.cwd(),\n        }),\n        new ModelNodeAuditOrchestrator().runAudit({\n          layer: options.layer,\n          verbose: options.verbose,\n          projectRoot: process.cwd(),\n        }),\n      ]);\n\n      let relOutput: string | undefined;\n      let nodeOutput: string | undefined;\n\n      if (relResult.status === \"fulfilled\") {\n        relOutput = formatAuditReport(relResult.value, { format, verbose: options.verbose });\n      } else {\n        console.error(ansis.red(`\u26A0\uFE0F  Relationship audit failed: ${getErrorMessage(relResult.reason)}`));\n      }\n      if (nodeResult.status === \"fulfilled\") {\n        nodeOutput = formatNodeAuditReport(nodeResult.value, { format, verbose: options.verbose });\n      } else {\n        console.error(ansis.red(`\u26A0\uFE0F  Node audit failed: ${getErrorMessage(nodeResult.reason)}`));\n      }\n\n      if (!relOutput && !nodeOutput) {\n        throw new CLIError(\"Both audit types failed. See errors above.\");\n      }\n\n      if (format === \"json\") {\n        const merged: Record<string, unknown> = {};\n        if (relOutput) merged.relationships = JSON.parse(relOutput);\n        if (nodeOutput) merged.nodes = JSON.parse(nodeOutput);\n        output = JSON.stringify(merged, null, 2);\n      } else {\n        output = [relOutput, nodeOutput].filter(Boolean).join(\"\\n\\n\");\n      }\n    } else {\n      // Default: relationships audit - analyzes the project's actual relationship instances\n      const orchestrator = new ModelAuditOrchestrator();\n      const report = await orchestrator.runAudit({\n        layer: options.layer,\n        verbose: options.verbose,\n        debug: options.debug,\n        projectRoot: process.cwd(),\n      });\n\n      output = formatAuditReport(report, { format, verbose: options.verbose });\n\n      // Save snapshot if requested (relationships audit only)\n      if (options.saveSnapshot) {\n        if (options.debug) {\n          console.log(ansis.dim(\"Saving audit snapshot...\"));\n        }\n\n        const storage = new SnapshotStorage();\n        const metadata = await storage.save(report);\n\n        console.log(ansis.green(`\u2713 Snapshot saved: ${metadata.id}`));\n        console.log(ansis.dim(`  Timestamp: ${formatDate(metadata.timestamp)}`));\n      }\n    }\n\n    // Write to file or stdout\n    if (options.output) {\n      const outputPath = path.resolve(process.cwd(), options.output);\n      const outputDir = path.dirname(outputPath);\n\n      await ensureDir(outputDir);\n      await writeFile(outputPath, output);\n\n      console.log(ansis.green(`\u2713 Audit report written to ${options.output}`));\n    } else {\n      console.log(output);\n    }\n  } catch (error) {\n    const message = getErrorMessage(error);\n    if (options.debug) {\n      console.error(error);\n    }\n    throw new CLIError(`Audit failed: ${message}`);\n  }\n}\n"],
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+  "sourcesContent": ["/**\n * Audit command - Analyze relationship coverage, gaps, duplicates, and balance\n */\n\nimport ansis from \"ansis\";\nimport { writeFile, ensureDir } from \"../utils/file-io.js\";\nimport { getErrorMessage, CLIError } from \"../utils/errors.js\";\nimport {\n  formatAuditReport,\n  formatNodeAuditReport,\n  AuditReportFormat,\n} from \"../export/audit-formatters.js\";\nimport { SnapshotStorage } from \"../audit/snapshot-storage.js\";\nimport { ModelAuditOrchestrator } from \"../audit/relationships/model/orchestrator.js\";\nimport { ModelNodeAuditOrchestrator } from \"../audit/nodes/model/orchestrator.js\";\nimport { formatDate } from \"../utils/date-utils.js\";\nimport path from \"path\";\n\nexport type AuditType = \"relationships\" | \"nodes\" | \"all\";\n\nexport interface AuditOptions {\n  layer?: string;\n  type?: AuditType;\n  format?: AuditReportFormat;\n  output?: string;\n  verbose?: boolean;\n  debug?: boolean;\n  saveSnapshot?: boolean;\n  projectRoot?: string;\n}\n\n/**\n * Run the audit command\n */\nexport async function auditCommand(options: AuditOptions): Promise<void> {\n  try {\n    const validAuditTypes: AuditType[] = [\"relationships\", \"nodes\", \"all\"];\n    if (options.type && !validAuditTypes.includes(options.type)) {\n      throw new CLIError(\n        `Invalid audit type: \"${options.type}\". Valid values are: ${validAuditTypes.join(\", \")}.`\n      );\n    }\n    const auditType: AuditType = options.type ?? \"relationships\";\n    const projectRoot = options.projectRoot ?? process.cwd();\n\n    // Determine output format\n    let format: AuditReportFormat = \"text\";\n    if (options.format) {\n      format = options.format;\n    } else if (options.output) {\n      const ext = path.extname(options.output).toLowerCase();\n      if (ext === \".json\") {\n        format = \"json\";\n      } else if (ext === \".md\") {\n        format = \"markdown\";\n      }\n    }\n\n    let output: string;\n\n    if (auditType === \"nodes\") {\n      // Node type audit - analyzes element types in the model\n      const orchestrator = new ModelNodeAuditOrchestrator();\n      const report = await orchestrator.runAudit({\n        layer: options.layer,\n        verbose: options.verbose,\n        projectRoot,\n      });\n\n      output = formatNodeAuditReport(report, { format, verbose: options.verbose });\n    } else if (auditType === \"all\") {\n      // Combined audit - run both independently; one failing does not suppress the other\n      const [relResult, nodeResult] = await Promise.allSettled([\n        new ModelAuditOrchestrator().runAudit({\n          layer: options.layer,\n          verbose: options.verbose,\n          debug: options.debug,\n          projectRoot,\n        }),\n        new ModelNodeAuditOrchestrator().runAudit({\n          layer: options.layer,\n          verbose: options.verbose,\n          projectRoot,\n        }),\n      ]);\n\n      let relOutput: string | undefined;\n      let nodeOutput: string | undefined;\n\n      if (relResult.status === \"fulfilled\") {\n        relOutput = formatAuditReport(relResult.value, { format, verbose: options.verbose });\n      } else {\n        console.error(ansis.red(`\u26A0\uFE0F  Relationship audit failed: ${getErrorMessage(relResult.reason)}`));\n      }\n      if (nodeResult.status === \"fulfilled\") {\n        nodeOutput = formatNodeAuditReport(nodeResult.value, { format, verbose: options.verbose });\n      } else {\n        console.error(ansis.red(`\u26A0\uFE0F  Node audit failed: ${getErrorMessage(nodeResult.reason)}`));\n      }\n\n      if (!relOutput && !nodeOutput) {\n        throw new CLIError(\"Both audit types failed. 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