@djolex999/vir-cli 0.23.3 → 0.24.2

package/README.md

@@ -409,8 +409,9 @@ Restart Claude Code. The vault is now queryable mid-session via six tools:
 `vir_project_summary`, `vir_compose`. `vir_query` takes a `type` filter
 (`session` | `article` | `topic` | `pdf` | `all`). Human-verified notes
 (approved via `vir review`) rank first; pass `verified_only: true` to see
-only those. The server is read-only: it never spends tokens and never writes
-files.
+only those. The server never writes the vault. `vir_query` is the one tool
+that spends tokens: it synthesizes an answer with your provider, and
+`synthesize: false` returns just the matching notes.
 
 To unregister: `vir mcp uninstall`.
 

package/dist/claude/updater.js

@@ -1,4 +1,4 @@
-import { existsSync, readdirSync, readFileSync, writeFileSync } from "node:fs";
+import { chmodSync, existsSync, readdirSync, readFileSync, realpathSync, renameSync, rmSync, statSync, writeFileSync, } from "node:fs";
 import { homedir } from "node:os";
 import { join } from "node:path";
 import { kebab } from "../pipeline/writer.js";
@@ -274,12 +274,32 @@ export function applyPlan(plan) {
         updated =
             updated.slice(0, first.from) + plan.newBlock + updated.slice(first.to);
     }
+    return writeAtomically(plan.target, updated)
+        ? { ok: true }
+        : { ok: false, reason: "could not write file" };
+}
+// CLAUDE.md belongs to the user: a crash or full disk mid-write must leave the
+// old file, never a truncated one. Write a sibling temp file and rename it over
+// the real path (resolving a dotfiles symlink so the link survives), keeping
+// the file's mode.
+function writeAtomically(target, content) {
+    let real;
+    try {
+        real = realpathSync(target);
+    }
+    catch {
+        return false;
+    }
+    const tmp = `${real}.vir-${process.pid}.tmp`;
     try {
-        writeFileSync(plan.target, updated);
-        return { ok: true };
+        writeFileSync(tmp, content, { mode: statSync(real).mode & 0o777 });
+        chmodSync(tmp, statSync(real).mode & 0o777);
+        renameSync(tmp, real);
+        return true;
     }
     catch {
-        return { ok: false, reason: "could not write file" };
+        rmSync(tmp, { force: true });
+        return false;
     }
 }
 export function globalClaudePath() {

package/dist/claude/updater.js.map

@@ -1 +1 @@
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package/dist/cli/audit.js

@@ -0,0 +1,136 @@
+import confirm from "@inquirer/confirm";
+import { loadConfig } from "../config.js";
+import { callLLM, maybeAnthropicClient, normalizeModelName, resolveModelShorthand, withRateLimitRetry, } from "../pipeline/distiller.js";
+import { applyAuditRejects, previewRejects } from "../audit/apply.js";
+import { batchByProject } from "../audit/batch.js";
+import { noteIsVerified, parseLimitOption, runAudit, selectAuditRows, } from "../audit/run.js";
+import { vaultRoot } from "../search/retriever.js";
+import { StateDb } from "../state/db.js";
+import * as ui from "../ui/display.js";
+import { estCostLabel } from "./costLabel.js";
+import { withPipelineLock } from "./guards.js";
+export async function auditCommand(opts) {
+    const limit = parseLimitOption(opts.limit);
+    if (limit === null) {
+        ui.header("audit");
+        ui.blank();
+        ui.row(ui.errorColor(ui.CROSS), ui.text(`--limit must be a positive integer, got "${opts.limit}"`));
+        process.exitCode = 1;
+        return;
+    }
+    const cfg = loadConfig();
+    const db = new StateDb();
+    try {
+        const root = vaultRoot(cfg);
+        if (opts.applyRejects) {
+            const { toMove: targets, verified } = previewRejects(db.listDistilled(), db.listAudits(), (r) => noteIsVerified(root, r), opts.project);
+            ui.header("audit");
+            ui.blank();
+            ui.summary({
+                rejects: { value: targets.length, color: ui.errorColor },
+                "approved, skipped": { value: verified.length, color: verified.length > 0 ? ui.warn : ui.muted },
+            });
+            for (const r of targets.slice(0, 20))
+                ui.line(`  ${ui.dim(ui.BULLET)} ${ui.text(r.topic)} ${ui.dim(r.project)}`);
+            if (targets.length > 20)
+                ui.line(ui.dim(`  … and ${targets.length - 20} more`));
+            ui.divider();
+            if (targets.length === 0 || opts.dryRun) {
+                if (opts.dryRun)
+                    ui.line(ui.dim("  dry run — nothing moved"));
+                return;
+            }
+            if (opts.yes !== true) {
+                const proceed = await confirm({ message: `move ${targets.length} notes to .rejected/?`, default: false });
+                if (!proceed) {
+                    ui.line(ui.dim("aborted"));
+                    return;
+                }
+            }
+            const s = applyAuditRejects(db, root, { project: opts.project });
+            ui.summary({
+                moved: { value: s.moved, color: ui.info },
+                "missing file": { value: s.missingFile, color: ui.muted },
+                collision: { value: s.collision, color: s.collision > 0 ? ui.warn : ui.muted },
+                verified: { value: s.verified, color: s.verified > 0 ? ui.warn : ui.muted },
+            });
+            ui.line(ui.dim("  undo any of them with `vir review --restore <note>`"));
+            return;
+        }
+        const auditOpts = { project: opts.project, limit, all: opts.all };
+        const isVerified = (r) => noteIsVerified(root, r);
+        const model = normalizeModelName(resolveModelShorthand(opts.model ?? cfg.models.distill), cfg.provider);
+        const picked = selectAuditRows(db.listDistilled(), db.listAudits(), auditOpts, isVerified);
+        const batches = batchByProject(picked.rows);
+        const inputTokens = Math.ceil(picked.rows.reduce((n, r) => n + r.content.length, 0) / 4 + batches.length * 600);
+        const outputTokens = picked.rows.length * 60;
+        const estCost = estCostLabel(cfg, model, inputTokens, outputTokens);
+        ui.header("audit");
+        ui.blank();
+        ui.summary({
+            notes: { value: picked.rows.length, color: ui.info },
+            batches: { value: batches.length, color: ui.info },
+            "already audited": { value: picked.skippedFresh, color: ui.muted },
+            verified: { value: picked.skippedVerified, color: ui.muted },
+            model: { value: model, color: ui.accent },
+            "est. cost": { value: estCost, color: ui.warn },
+        });
+        ui.divider();
+        if (picked.rows.length === 0) {
+            ui.row(ui.success(ui.CHECK), ui.text("nothing to audit"));
+            return;
+        }
+        if (opts.dryRun) {
+            ui.line(ui.dim("  dry run — no model calls made"));
+            return;
+        }
+        if (opts.yes !== true) {
+            const proceed = await confirm({ message: `audit ${picked.rows.length} notes with ${model} (~${estCost})?`, default: true });
+            if (!proceed) {
+                ui.line(ui.dim("aborted"));
+                return;
+            }
+        }
+        const client = maybeAnthropicClient(cfg);
+        // Judging writes verdicts to the DB: hold the lock like every other
+        // writer (--apply-rejects takes it itself).
+        let summary;
+        await withPipelineLock(async () => {
+            const sp = ui.spinner(`auditing ${batches.length} batches`).start();
+            try {
+                summary = await runAudit(db, auditOpts, {
+                    isVerified,
+                    llm: (prompt) => withRateLimitRetry(() => callLLM(cfg, client, {
+                        prompt,
+                        model,
+                        maxTokens: 4000,
+                        cost: { stage: "audit" },
+                    })),
+                });
+                sp.stop();
+            }
+            catch (err) {
+                sp.fail(ui.errorColor(err.message));
+                process.exitCode = 1;
+            }
+        });
+        if (summary === undefined)
+            return;
+        ui.summary({
+            audited: { value: summary.audited, color: ui.info },
+            keep: { value: summary.byVerdict.keep, color: ui.success },
+            verify: { value: summary.byVerdict.verify, color: ui.warn },
+            merge: { value: summary.byVerdict.merge, color: ui.warn },
+            reject: { value: summary.byVerdict.reject, color: ui.errorColor },
+            unanswered: { value: summary.unanswered, color: ui.muted },
+            "failed batches": { value: summary.failedBatches, color: summary.failedBatches > 0 ? ui.errorColor : ui.muted },
+        });
+        ui.line(ui.dim("  nothing was moved — walk the flagged notes with `vir review --audited`"));
+        if (summary.failedBatches > 0)
+            process.exitCode = 1;
+    }
+    finally {
+        db.close();
+    }
+}
+//# sourceMappingURL=audit.js.map

package/dist/cli/audit.js.map

@@ -0,0 +1 @@
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package/dist/cli/compose.js

@@ -0,0 +1,101 @@
+import confirm from "@inquirer/confirm";
+import chalk from "chalk";
+import { loadConfig } from "../config.js";
+import { normalizeModelName, resolveModelShorthand, } from "../pipeline/distiller.js";
+import { composeFromSources, estimateComposeCostTokens, gatherSources, } from "../pipeline/composer.js";
+import { StateDb } from "../state/db.js";
+import { readCostLog } from "../cost/log.js";
+import * as ui from "../ui/display.js";
+import { estCostLabel } from "./costLabel.js";
+import { VaultWriter } from "../pipeline/writer.js";
+import { withPipelineLock } from "./guards.js";
+export async function composeCommand(topic, opts) {
+    // Writes notes and the DB: hold the lock (a dry run only reads).
+    const run = async () => {
+        const cfg = loadConfig();
+        if (opts.model && !["haiku", "sonnet"].includes(opts.model)) {
+            console.error(chalk.red(`--model must be 'haiku' or 'sonnet', got '${opts.model}'`));
+            process.exitCode = 1;
+            return;
+        }
+        const limit = Math.min(50, Math.max(1, Number.parseInt(opts.limit ?? "20", 10) || 20));
+        const db = new StateDb();
+        try {
+            ui.header("compose");
+            ui.divider();
+            console.log(ui.text(topic));
+            ui.divider();
+            ui.blank();
+            const sp = ui.spinner("searching vault for related notes").start();
+            const sources = await gatherSources(cfg, db, topic, limit);
+            sp.stop();
+            if (sources.length === 0) {
+                ui.row(ui.warn(ui.WARN_GLYPH), ui.text("no related notes found — nothing to synthesize"));
+                ui.line(ui.dim("  run `vir run` to distill more sessions first"));
+                return;
+            }
+            for (const s of sources.slice(0, 10))
+                ui.sourceRow(s.title, s.score);
+            ui.divider();
+            const model = normalizeModelName(resolveModelShorthand(opts.model ?? cfg.models.distill), cfg.provider);
+            const { inputTokens, outputTokens } = estimateComposeCostTokens(topic, sources);
+            const estCost = estCostLabel(cfg, model, inputTokens, outputTokens);
+            ui.summary({
+                sources: { value: sources.length, color: ui.info },
+                model: { value: model, color: ui.accent },
+                "est. cost": { value: estCost, color: ui.warn },
+            });
+            ui.divider();
+            if (opts.dryRun) {
+                ui.line(ui.dim("  dry run — no synthesis performed; actuals may vary ±30%"));
+                return;
+            }
+            if (opts.yes !== true) {
+                const proceed = await confirm({
+                    message: `synthesize with ${model} (~${estCost})?`,
+                    default: true,
+                });
+                if (!proceed) {
+                    ui.line(ui.dim("aborted"));
+                    return;
+                }
+            }
+            const writer = new VaultWriter(cfg, db);
+            const sp2 = ui.spinner("synthesizing topic page").start();
+            let result;
+            try {
+                result = await composeFromSources(cfg, db, topic, sources, writer, {
+                    forceModel: opts.model,
+                });
+                sp2.stop();
+            }
+            catch (err) {
+                sp2.fail(ui.errorColor(err.message));
+                process.exitCode = 1;
+                return;
+            }
+            ui.row(ui.success(ui.CHECK), ui.text(`wrote ${result.relPath}`));
+            ui.blank();
+            // Actual cost from the record callLLM just appended for this compose.
+            const rec = [...readCostLog()]
+                .reverse()
+                .find((r) => r.stage === "compose" && r.session === result.slug);
+            ui.summary({
+                title: { value: result.title, color: ui.text },
+                sources: { value: result.sourceCount, color: ui.info },
+                confidence: { value: result.confidence.toFixed(2), color: ui.info },
+                ...(rec && rec.estimated_cost_usd !== null
+                    ? { cost: { value: ui.formatUsd(rec.estimated_cost_usd), color: ui.warn } }
+                    : {}),
+            });
+        }
+        finally {
+            db.close();
+        }
+    };
+    if (opts.dryRun)
+        await run();
+    else
+        await withPipelineLock(run);
+}
+//# sourceMappingURL=compose.js.map

package/dist/cli/compose.js.map

@@ -0,0 +1 @@
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package/dist/cli/costLabel.js

@@ -0,0 +1,14 @@
+import { computeCost, resolvePricing } from "../cost/pricing.js";
+import * as ui from "../ui/display.js";
+// Dollar-estimate label for the ACTIVE provider. On the subscription path the
+// honest label is quota, never "$0.00" — a zero would read as "free API call"
+// and hide that the run consumes the user's Claude Code limits.
+export function estCostLabel(cfg, model, inputTokens, outputTokens) {
+    if (cfg.provider === "claude-cli")
+        return "subscription quota (no $)";
+    if (resolvePricing(cfg.provider, model, cfg.pricing, cfg.kieTopUpTier) === null) {
+        return `unknown (no price for ${model})`;
+    }
+    return ui.formatUsd(computeCost(cfg.provider, model, inputTokens, outputTokens, cfg.pricing, cfg.kieTopUpTier));
+}
+//# sourceMappingURL=costLabel.js.map

package/dist/cli/costLabel.js.map

@@ -0,0 +1 @@
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package/dist/cli/dedupe.js

@@ -0,0 +1,92 @@
+import chalk from "chalk";
+import { createInterface } from "node:readline/promises";
+import { stdin, stdout } from "node:process";
+import { loadConfig } from "../config.js";
+import { detectDuplicates } from "../dedupe/detector.js";
+import { mergeNotes } from "../dedupe/merger.js";
+import { StateDb } from "../state/db.js";
+import { confirmPaidStep, withPipelineLock } from "./guards.js";
+export async function dedupeCommand(opts) {
+    const cfg = loadConfig();
+    const proceed = await confirmPaidStep(`dedupe checks up to 30 candidate pairs with ${cfg.models.classify} (one paid call each, plus one per merge you accept)`, { yes: opts.yes });
+    if (!proceed)
+        return;
+    await withPipelineLock(async () => {
+        const db = new StateDb();
+        try {
+            console.log("scanning for duplicate candidates...");
+            const result = await detectDuplicates(cfg, db);
+            console.log(`${result.checked} candidate pairs checked, ${result.duplicates.length} flagged as duplicates`);
+            if (result.duplicates.length === 0) {
+                return;
+            }
+            const rl = createInterface({ input: stdin, output: stdout });
+            let merged = 0;
+            let skipped = 0;
+            for (const dup of result.duplicates) {
+                console.log("\nDuplicate found:");
+                console.log(`A: ${noteRefOf(dup.a)} (conf: ${dup.a.confidence.toFixed(2)}, ${dup.a.startedAt?.slice(0, 10) ?? "?"})`);
+                console.log(`   "${preview(dup.a.content)}"`);
+                console.log(`B: ${noteRefOf(dup.b)} (conf: ${dup.b.confidence.toFixed(2)}, ${dup.b.startedAt?.slice(0, 10) ?? "?"})`);
+                console.log(`   "${preview(dup.b.content)}"`);
+                console.log(`Reason: ${dup.reason}`);
+                const suggestion = dup.keepWhich === "merge"
+                    ? "merge both"
+                    : `keep ${dup.keepWhich}`;
+                console.log(`Suggested: ${suggestion}`);
+                const ans = (await rl.question("[k]eep suggestion / [s]wap / [m]erge / [x] skip: "))
+                    .trim()
+                    .toLowerCase();
+                let action = null;
+                if (ans === "k" || ans === "") {
+                    action = dup.keepWhich;
+                }
+                else if (ans === "s") {
+                    action =
+                        dup.keepWhich === "A"
+                            ? "B"
+                            : dup.keepWhich === "B"
+                                ? "A"
+                                : "merge";
+                }
+                else if (ans === "m") {
+                    action = "merge";
+                }
+                else if (ans === "x") {
+                    skipped += 1;
+                    continue;
+                }
+                else {
+                    console.log(chalk.yellow("unknown input — skipping"));
+                    skipped += 1;
+                    continue;
+                }
+                try {
+                    const outcome = await mergeNotes(cfg, db, dup.a, dup.b, action);
+                    merged += 1;
+                    console.log(chalk.green(`merged (${outcome.action}): winner=${outcome.winnerPath} archived=${outcome.archivedPath}`));
+                }
+                catch (err) {
+                    console.error(chalk.red(`merge failed: ${err.message}`));
+                }
+            }
+            rl.close();
+            console.log(`\n${result.duplicates.length} pairs reviewed, ${merged} merged, ${skipped} skipped.`);
+        }
+        finally {
+            db.close();
+        }
+    });
+}
+function noteRefOf(r) {
+    const dir = `${r.category}s`;
+    const slug = r.topic
+        .toLowerCase()
+        .replace(/[^a-z0-9]+/g, "-")
+        .replace(/^-+|-+$/g, "");
+    return `${dir}/${slug}-${r.sessionId.slice(0, 8)}`;
+}
+function preview(s) {
+    return s.replace(/\s+/g, " ").trim().slice(0, 80);
+}
+//# sourceMappingURL=dedupe.js.map

package/dist/cli/dedupe.js.map

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