@datagrok/sequence-translator 1.0.17 → 1.1.0

package/src/hardcode-to-be-eliminated/map.ts

@@ -1,720 +0,0 @@
-import * as DG from 'datagrok-api/dg';
-import {getAllCodesOfSynthesizer} from '../sdf-tab/sequence-codes-tools';
-import {differenceOfTwoArrays} from '../utils/helpers';
-
-export const DELIMITER = ';';
-export const NUCLEOTIDES = ['A', 'G', 'C', 'U', 'T'];
-export const SYNTHESIZERS = {
-  RAW_NUCLEOTIDES: 'Raw Nucleotides',
-  BIOSPRING: 'BioSpring Codes',
-  GCRS: 'Janssen GCRS Codes',
-  AXOLABS: 'Axolabs Codes',
-  MERMADE_12: 'Mermade 12',
-  LCMS: 'LCMS',
-};
-export const TECHNOLOGIES = {
-  DNA: 'DNA',
-  RNA: 'RNA',
-  ASO_GAPMERS: 'For ASO Gapmers',
-  SI_RNA: 'For 2\'-OMe and 2\'-F modified siRNA',
-};
-export const MODIFICATIONS: {[index: string]: {molecularWeight: number, left: string, right: string}} = {
-  '(invabasic)': {
-    molecularWeight: 118.13,
-    left: 'O[C@@H]1C[C@@H]O[C@H]1CO',
-    right: 'O[C@@H]1C[C@@H]O[C@H]1CO',
-  },
-  '(GalNAc-2-JNJ)': {
-    molecularWeight: 1273.3,
-    left: 'C(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
-    '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
-    '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)NC(=O)CCCC(=O)NCC(O)CO',
-    right: 'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
-    '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)'+
-    '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)',
-  },
-};
-export const stadardPhosphateLinkSmiles = 'OP(=O)(O)O';
-export const map: {[synthesizer: string]:
-  {[technology: string]: {[code: string]:
-    {'name': string, 'weight': number, 'normalized': string, 'SMILES': string}}}} = {
-      'Raw Nucleotides': {
-        'DNA': {
-          'A': {
-            'name': 'Adenine',
-            'weight': 313.21,
-            'normalized': 'dA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)C[C@@H]1O',
-          },
-          'T': {
-            'name': 'Thymine',
-            'weight': 304.2,
-            'normalized': 'dT',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(=O)NC2(=O))C[C@@H]1O',
-          },
-          'G': {
-            'name': 'Guanine',
-            'weight': 329.21,
-            'normalized': 'dG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)C[C@@H]1O',
-          },
-          'C': {
-            'name': 'Cytosine',
-            'weight': 289.18,
-            'normalized': 'dC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))C[C@@H]1O',
-          },
-        },
-        'RNA': {
-          'A': {
-            'name': 'Adenine',
-            'weight': 313.21,
-            'normalized': 'dA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)C[C@@H]1O',
-          },
-          'U': {
-            'name': 'Uracil',
-            'weight': 306.17,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](O)[C@@H]1O',
-          },
-          'G': {
-            'name': 'Guanine',
-            'weight': 329.21,
-            'normalized': 'dG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)C[C@@H]1O',
-          },
-          'C': {
-            'name': 'Cytosine',
-            'weight': 289.18,
-            'normalized': 'dC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))C[C@@H]1O',
-          },
-        },
-      },
-      'BioSpring Codes': {
-        'For ASO Gapmers': {
-          '5': {
-            'name': '2\'MOE-5Me-rU',
-            'weight': 378.27,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(=O)NC2(=O))[C@H](OCCOC)[C@@H]1O',
-          },
-          '6': {
-            'name': '2\'MOE-rA',
-            'weight': 387.29,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OCCOC)[C@@H]1O',
-          },
-          '7': {
-            'name': '2\'MOE-5Me-rC',
-            'weight': 377.29,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(N)=NC2(=O))[C@H](OCCOC)[C@@H]1O',
-          },
-          '8': {
-            'name': '2\'MOE-rG',
-            'weight': 403.28,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OCCOC)[C@@H]1O',
-          },
-          '9': {
-            'name': '5-Methyl-dC',
-            'weight': 303.21,
-            'normalized': 'dC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(N)=NC2(=O))C[C@@H]1O',
-          },
-          '*': {
-            'name': 'ps linkage',
-            'weight': 16.07,
-            'normalized': '',
-            'SMILES': 'OP(=O)(S)O',
-          },
-          'A': {
-            'name': 'Adenine',
-            'weight': 313.21,
-            'normalized': 'dA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)C[C@@H]1O',
-          },
-          'C': {
-            'name': 'Cytosine',
-            'weight': 289.18,
-            'normalized': 'dC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))C[C@@H]1O',
-          },
-          'G': {
-            'name': 'Guanine',
-            'weight': 329.21,
-            'normalized': 'dG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)C[C@@H]1O',
-          },
-          'T': {
-            'name': 'Thymine',
-            'weight': 304.2,
-            'normalized': 'dT',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(=O)NC2(=O))C[C@@H]1O',
-          },
-        },
-        'For 2\'-OMe and 2\'-F modified siRNA': {
-          '1': {
-            'name': '2\'-fluoro-U',
-            'weight': 308.16,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1O',
-          },
-          '2': {
-            'name': '2\'-fluoro-A',
-            'weight': 331.2,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](F)[C@@H]1O',
-          },
-          '3': {
-            'name': '2\'-fluoro-C',
-            'weight': 307.18,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](F)[C@@H]1O',
-          },
-          '4': {
-            'name': '2\'-fluoro-G',
-            'weight': 347.19,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](F)[C@@H]1O',
-          },
-          '5': {
-            'name': '2\'OMe-rU',
-            'weight': 320.2,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1O',
-          },
-          '6': {
-            'name': '2\'OMe-rA',
-            'weight': 343.24,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1O',
-          },
-          '7': {
-            'name': '2\'OMe-rC',
-            'weight': 319.21,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1O',
-          },
-          '8': {
-            'name': '2\'OMe-rG',
-            'weight': 359.24,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1O',
-          },
-          '*': {
-            'name': 'ps linkage',
-            'weight': 16.07,
-            'normalized': '',
-            'SMILES': 'OP(=O)(S)O',
-          },
-        },
-      },
-      'Axolabs Codes': {
-        'For 2\'-OMe and 2\'-F modified siRNA': {
-          'Uf': {
-            'name': '2\'-fluoro-U',
-            'weight': 308.16,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1O',
-          },
-          'Af': {
-            'name': '2\'-fluoro-A',
-            'weight': 331.2,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](F)[C@@H]1O',
-          },
-          'Cf': {
-            'name': '2\'-fluoro-C',
-            'weight': 307.18,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](F)[C@@H]1O',
-          },
-          'Gf': {
-            'name': '2\'-fluoro-G',
-            'weight': 347.19,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](F)[C@@H]1O',
-          },
-          'u': {
-            'name': '2\'OMe-rU',
-            'weight': 320.2,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1O',
-          },
-          'a': {
-            'name': '2\'OMe-rA',
-            'weight': 343.24,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1O',
-          },
-          'c': {
-            'name': '2\'OMe-rC',
-            'weight': 319.21,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1O',
-          },
-          'g': {
-            'name': '2\'OMe-rG',
-            'weight': 359.,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1O',
-          },
-          's': {
-            'name': 'ps linkage',
-            'weight': 16.07,
-            'normalized': '',
-            'SMILES': 'OP(=O)(S)O',
-          },
-        },
-      },
-      'Janssen GCRS Codes': {
-        'For ASO Gapmers': {
-          'moeT': {
-            'name': '2\'MOE-5Me-rU',
-            'weight': 378.27,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(=O)NC2(=O))[C@H](OCCOC)[C@@H]1O',
-          },
-          'moeA': {
-            'name': '2\'MOE-rA',
-            'weight': 387.29,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OCCOC)[C@@H]1O',
-          },
-          'moe5mC': {
-            'name': '2\'MOE-5Me-rC',
-            'weight': 377.29,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(N)=NC2(=O))[C@H](OCCOC)[C@@H]1O',
-          },
-          '(5m)moeC': {
-            'name': '2\'MOE-5Me-rC',
-            'weight': 377.29,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(N)=NC2(=O))[C@H](OCCOC)[C@@H]1O',
-          },
-          'moeG': {
-            'name': '2\'MOE-rG',
-            'weight': 403.28,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OCCOC)[C@@H]1O',
-          },
-          '5mC': {
-            'name': '5-Methyl-dC',
-            'weight': 303.28,
-            'normalized': 'dC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(N)=NC2(=O))C[C@@H]1O',
-          },
-          '(5m)C': {
-            'name': '5-Methyl-dC',
-            'weight': 303.28,
-            'normalized': 'dC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(N)=NC2(=O))C[C@@H]1O',
-          },
-          'ps': {
-            'name': 'ps linkage',
-            'weight': 16.07,
-            'normalized': '',
-            'SMILES': 'OP(=O)(S)O',
-          },
-          's': {
-            'name': 'ps linkage',
-            'weight': 16.07,
-            'normalized': '',
-            'SMILES': 'OP(=O)(S)O',
-          },
-          'A': {
-            'name': 'Adenine',
-            'weight': 313.21,
-            'normalized': 'dA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)C[C@@H]1O',
-          },
-          'dA': {
-            'name': 'Adenine',
-            'weight': 313.21,
-            'normalized': 'dA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)C[C@@H]1O',
-          },
-          'C': {
-            'name': 'Cytosine',
-            'weight': 289.18,
-            'normalized': 'dC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))C[C@@H]1O',
-          },
-          'dC': {
-            'name': 'Cytosine',
-            'weight': 289.18,
-            'normalized': 'dC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))C[C@@H]1O',
-          },
-          'G': {
-            'name': 'Guanine',
-            'weight': 329.21,
-            'normalized': 'dG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)C[C@@H]1O',
-          },
-          'dG': {
-            'name': 'Guanine',
-            'weight': 329.21,
-            'normalized': 'dG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)C[C@@H]1O',
-          },
-          'T': {
-            'name': 'Thymine',
-            'weight': 304.2,
-            'normalized': 'dT',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(=O)NC2(=O))C[C@@H]1O',
-          },
-          'dT': {
-            'name': 'Thymine',
-            'weight': 304.2,
-            'normalized': 'dT',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=C(C)C(=O)NC2(=O))C[C@@H]1O',
-          },
-          'rA': {
-            'name': 'Adenine',
-            'weight': 329.21,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](O)[C@@H]1O',
-          },
-          'rC': {
-            'name': 'Cytosine',
-            'weight': 305.18,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](O)[C@@H]1O',
-          },
-          'rG': {
-            'name': 'Guanine',
-            'weight': 345.21,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](O)[C@@H]1O',
-          },
-          'rU': {
-            'name': 'Uracil',
-            'weight': 306.17,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](O)[C@@H]1O',
-          },
-        },
-        'For 2\'-OMe and 2\'-F modified siRNA': {
-          'fU': {
-            'name': '2\'-fluoro-U',
-            'weight': 308.16,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1O',
-          },
-          'fA': {
-            'name': '2\'-fluoro-A',
-            'weight': 331.2,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](F)[C@@H]1O',
-          },
-          'fC': {
-            'name': '2\'-fluoro-C',
-            'weight': 307.18,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](F)[C@@H]1O',
-          },
-          'fG': {
-            'name': '2\'-fluoro-G',
-            'weight': 347.19,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](F)[C@@H]1O',
-          },
-          'mU': {
-            'name': '2\'OMe-rU',
-            'weight': 320.2,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1O',
-          },
-          'mA': {
-            'name': '2\'OMe-rA',
-            'weight': 343.24,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1O',
-          },
-          'mC': {
-            'name': '2\'OMe-rC',
-            'weight': 319.21,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1O',
-          },
-          'mG': {
-            'name': '2\'OMe-rG',
-            'weight': 359.24,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1O',
-          },
-        },
-        'Others': {},
-      },
-      'Mermade 12': {
-        'For 2\'-OMe and 2\'-F modified siRNA': {
-          'e': {
-            'name': '2\'OMe-rA-ps',
-            'weight': 359.31,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(S)O',
-          },
-          'h': {
-            'name': '2\'OMe-rU-ps',
-            'weight': 336.27,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(S)O',
-          },
-          'g': {
-            'name': '2\'OMe-rG-ps',
-            'weight': 375.31,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(S)O',
-          },
-          'f': {
-            'name': '2\'OMe-rC-ps',
-            'weight': 335.28,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1OP(=O)(S)O',
-          },
-          'i': {
-            'name': '2\'-fluoro-A-ps',
-            'weight': 347.27,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](F)[C@@H]1OP(=O)(S)O',
-          },
-          'l': {
-            'name': '2\'-fluoro-U-ps',
-            'weight': 324.23,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1OP(=O)(S)O',
-          },
-          'k': {
-            'name': '2\'-fluoro-G-ps',
-            'weight': 363.26,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](F)[C@@H]1OP(=O)(S)O',
-          },
-          'j': {
-            'name': '2\'-fluoro-C-ps',
-            'weight': 323.25,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](F)[C@@H]1OP(=O)(S)O',
-          },
-          'L': {
-            'name': '2\'-fluoro-U',
-            'weight': 308.16,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1O',
-          },
-          'I': {
-            'name': '2\'-fluoro-A',
-            'weight': 331.2,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](F)[C@@H]1O',
-          },
-          'J': {
-            'name': '2\'-fluoro-C',
-            'weight': 307.18,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](F)[C@@H]1O',
-          },
-          'K': {
-            'name': '2\'-fluoro-G',
-            'weight': 347.19,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](F)[C@@H]1O',
-          },
-          'H': {
-            'name': '2\'OMe-rU',
-            'weight': 320.2,
-            'normalized': 'rU',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1O',
-          },
-          'E': {
-            'name': '2\'OMe-rA',
-            'weight': 343.24,
-            'normalized': 'rA',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1O',
-          },
-          'F': {
-            'name': '2\'OMe-rC',
-            'weight': 319.21,
-            'normalized': 'rC',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1O',
-          },
-          'G': {
-            'name': '2\'OMe-rG',
-            'weight': 359.24,
-            'normalized': 'rG',
-            'SMILES': 'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1O',
-          },
-        },
-      },
-    };
-
-export const lcmsToGcrs = `LCMS, GCRS
-A, A
-C, C
-/5mC/, (5m)C
-G, G
-T, T
-rA, rA
-rC, rC
-rG, rG
-rU, rU
-mA, mA
-mC, mC
-/5mmC/, (5m)mC
-mG, mG
-mU, mU
-fA, fA
-fC, fC
-/5mfC/, (5m)fC
-fG, fG
-fU, fU
-/afA/, afA
-/afC/, afC
-/afG/, afG
-/afU/, afU
-+A, lna A
-+C, lna C
-+G, lna G
-+T, lna T
-/moeA/, moeA
-/moeC/, moeC
-/5mmoeC/, (5m)moeC
-/moeG/, moeG
-/moeT/, moeT
-/moeU/, moeU
-/xA/, Anp
-/xC/, Cnp
-/x5mC/, (5m)Cnp
-/xG/, Gnp
-/xT/, Tnp
-/xrA/, rAnp
-/xrC/, rCnp
-/xrG/, rGnp
-/xrU/, rUnp
-/xmA/, mAnp
-/xmC/, mCnp
-/x5mmC/, (5m)mCnp
-/xmG/, mGnp
-/xmU/, mUnp
-/xfA/, fAnp
-/xfC/, fCnp
-/xfG/, fGnp
-/xfT/, fTnp
-/xfU/, fUnp
-/xafA/, afAnp
-/xafC/, afCnp
-/xafG/, afGnp
-/xafU/, afUnp
-/xeA/, eAnp
-/xeC/, eCnp
-/xeG/, eGnp
-/xeU/, eUnp
-/xmoeA/, moeAnp
-/xmoeC/, moeCnp
-/x5mmoeC/, (5m)moeCnp
-/xmoeG/, moeGnp
-/xmoeU/, moeUnp
-/UNA-A/, (UNA-A)
-/UNA-C/, (UNA-C)
-/UNA-G/, (UNA-G)
-/UNA-T/, (UNA-T)
-/UNA-U/, (UNA-U)
-/GNA-A/, (GNA-A)
-/GNA-C/, (GNA-C)
-/GNA-G/, (GNA-G)
-/GNA-T/, (GNA-T)
-/GNA-U/, (GNA-U)
-/5CholTEG/, (5-CholTEG)
-/3CholTEG/, (TEGChol-3)
-/Toco/, Toco
-/Palm/, Palm
-/GalNAc/, GalNAc
-/GalNAc2/, GalNAc2
-/GalNAc3/, GalNAc3
-/GalNAc6/, GalNAc6
-/GalNAc7/, GalNAc7
-/GalNAc9/, GalNAc9
-/GalNAc14/, GalNAc14
-/NAG37/, NAG37
-/HEG/, (HEG)
-/TEG/, (TEG)
-/AmmC6/, (NHC6)
-/AmmC7/, (NHC7)
-/AmmC12/, (NHC12)
-/invAb/, (invabasic)
-/invdT/, (invdT)
-/VPmU/, (vinu)
-*, ps
-/2-C16U/, 2-C16U 
-/2-C18w9U/, 2-C18w9U
-/JDi-Palm/, JDi-Palm
-/J2-CONC16U/, J2-CONC16U
-/J2-C3NC16U/, J2-C3NC16U
-/J-C15Ada/, J-C15Ada
-/J-2C15AdaU/, J-2C15AdaU
-/J-C16NC6/, J-C16NC6
-/R2-C6NH-U/, R2-C6NH-U
-/J-M1/, J-M1
-/J-B1/, J-B1
-/J-B2/, J-B2
-/J-M2/, J-M2
-/2-C16C/, 2-C16C
-/2-C16A/, 2-C16A
-/2-C16G/, 2-C16G
-/R2-C6NH-G/, R2-C6NH-G
-/R2-C6NH-C/, R2-C6NH-C
-/J2-CONC16A/, J2-CONC16A
-/J2-CONC16C/, J2-CONC16C
-/J2-CONC16G/, J2-CONC16G
-/J2-C15AdaC/, J2-C15AdaC
-/J2-M2U/, J2-M2U
-/J2-B2U/, J2-B2U
-/J2-C3NC16C/, J2-C3NC16C
-/J2-C3NC16G/, J2-C3NC16G
-/R2-C6NH-A/, R2-C6NH-A
-/J2-C15AdaA/, J2-C15AdaA
-/J2-C3NC16A/, J2-C3NC16A
-/J-C5-SER-1/, J-C5-SER-1
-/J-C16-SER-1/, J-C16-SER-1
-/J-A2/, J-A2
-/J-A1/, J-A1
-/J2-C15AdaG/, J2-C15AdaG
-/J-C16NAsp/, J-C16NAsp
-/J2-C16NC6U/, J2-C16NC6U
-/J-C5-REBO-1/, J-C5-REBO-1
-/J-C16-REBO-1/, J-C16-REBO-1
-/J-C16-IND-1/, J-C16-IND-1
-/J-C5-IND-1/, J-C5-IND-1
-/J-1C15Ada-2Man/, J-1C15Ada-2Man
-/JG-1C15Ada-23DiMan/, JG-1C15Ada-2,3DiMan
-/J-TriManPC/, J-TriManPC
-/J-triManPO/, J-triManPO
-/J-A4/, J-A4
-/J-Ara-1/, J-Ara-1
-/J-Ara-2/, J-Ara-2
-/J-AcCS/, J-AcCS
-/J-CbCS/, J-CbCS
-/J-MtCD/, J-MtCD`;
-
-
-const codesWithSmiles = getAllCodesOfSynthesizer(SYNTHESIZERS.GCRS);
-const allGcrsCodes = DG.DataFrame.fromCsv(lcmsToGcrs).getCol('GCRS').toList();
-export const gcrsCodesWithoutSmiles = differenceOfTwoArrays(allGcrsCodes, codesWithSmiles);
-for (const e of gcrsCodesWithoutSmiles)
-  map[SYNTHESIZERS.GCRS]['Others'][e] = {name: '', weight: 0, normalized: '', SMILES: ''};
-
-
-export const weightsObj: {[code: string]: number} = {};
-for (const synthesizer of Object.keys(map)) {
-  for (const technology of Object.keys(map[synthesizer])) {
-    for (const code of Object.keys(map[synthesizer][technology]))
-      weightsObj[code] = map[synthesizer][technology][code].weight;
-  }
-}
-for (const [key, value] of Object.entries(MODIFICATIONS))
-  weightsObj[key] = value.molecularWeight;