@datagrok/sequence-translator 1.0.17 → 1.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.eslintrc.json +4 -3
- package/CHANGELOG.md +3 -0
- package/detectors.js +8 -0
- package/dist/package-test.js +2 -73079
- package/dist/package-test.js.map +1 -0
- package/dist/package.js +2 -72284
- package/dist/package.js.map +1 -0
- package/files/axolabs-style.json +97 -0
- package/files/codes-to-symbols.json +66 -0
- package/files/formats-to-helm.json +59 -0
- package/files/linkers.json +22 -0
- package/files/monomer-lib.json +1094 -0
- package/link-bio +7 -0
- package/package.json +30 -28
- package/scripts/build-monomer-lib.py +391 -122
- package/src/demo/demo-st-ui.ts +71 -0
- package/src/demo/handle-error.ts +12 -0
- package/src/model/axolabs/axolabs-tab.ts +111 -0
- package/src/model/axolabs/const.ts +33 -0
- package/src/{axolabs-tab → model/axolabs}/draw-svg.ts +1 -1
- package/src/{axolabs-tab → model/axolabs}/helpers.ts +7 -5
- package/src/model/const.ts +19 -0
- package/src/model/data-loading-utils/const.ts +8 -0
- package/src/model/data-loading-utils/json-loader.ts +38 -0
- package/src/model/data-loading-utils/types.ts +30 -0
- package/src/model/format-translation/const.ts +8 -0
- package/src/model/format-translation/conversion-utils.ts +48 -0
- package/src/model/format-translation/format-converter.ts +107 -0
- package/src/model/helpers.ts +12 -0
- package/src/model/monomer-lib/const.ts +3 -0
- package/src/model/monomer-lib/lib-wrapper.ts +106 -0
- package/src/model/parsing-validation/format-detector.ts +57 -0
- package/src/model/parsing-validation/sequence-validator.ts +52 -0
- package/src/model/sequence-to-structure-utils/const.ts +1 -0
- package/src/{utils/structures-works → model/sequence-to-structure-utils}/mol-transformations.ts +33 -41
- package/src/model/sequence-to-structure-utils/monomer-code-parser.ts +92 -0
- package/src/model/sequence-to-structure-utils/sdf-tab.ts +94 -0
- package/src/model/sequence-to-structure-utils/sequence-to-molfile.ts +409 -0
- package/src/package.ts +104 -92
- package/src/tests/const.ts +17 -0
- package/src/tests/smiles-tests.ts +32 -457
- package/src/view/const/main-tab.ts +3 -0
- package/src/view/const/view.ts +10 -0
- package/src/view/css/axolabs-tab.css +1 -0
- package/src/view/css/colored-text-input.css +27 -0
- package/src/view/css/main-tab.css +46 -0
- package/src/view/css/sdf-tab.css +39 -0
- package/src/view/monomer-lib-viewer/viewer.ts +22 -0
- package/src/view/tabs/axolabs.ts +720 -0
- package/src/view/tabs/main.ts +174 -0
- package/src/view/tabs/sdf.ts +173 -0
- package/src/view/utils/app-info-dialog.ts +18 -0
- package/src/view/utils/colored-input/colored-text-input.ts +56 -0
- package/src/view/utils/colored-input/input-painters.ts +44 -0
- package/src/view/utils/draw-molecule.ts +86 -0
- package/src/view/utils/molecule-img.ts +106 -0
- package/src/view/view.ts +129 -0
- package/tsconfig.json +12 -18
- package/webpack.config.js +17 -4
- package/README.md +0 -84
- package/css/style.css +0 -18
- package/img/Sequence Translator Axolabs.png +0 -0
- package/jest.config.js +0 -33
- package/setup-unlink-clean.cmd +0 -14
- package/setup-unlink-clean.sh +0 -21
- package/setup.cmd +0 -14
- package/setup.sh +0 -37
- package/src/__jest__/remote.test.ts +0 -77
- package/src/__jest__/test-node.ts +0 -97
- package/src/apps/oligo-sd-file-app.ts +0 -58
- package/src/autostart/calculations.ts +0 -40
- package/src/autostart/constants.ts +0 -37
- package/src/autostart/registration.ts +0 -306
- package/src/axolabs-tab/axolabs-tab.ts +0 -873
- package/src/axolabs-tab/define-pattern.ts +0 -874
- package/src/hardcode-to-be-eliminated/ICDs.ts +0 -3
- package/src/hardcode-to-be-eliminated/IDPs.ts +0 -3
- package/src/hardcode-to-be-eliminated/const.ts +0 -5
- package/src/hardcode-to-be-eliminated/constants.ts +0 -101
- package/src/hardcode-to-be-eliminated/converters.ts +0 -323
- package/src/hardcode-to-be-eliminated/map.ts +0 -720
- package/src/hardcode-to-be-eliminated/salts.ts +0 -2
- package/src/hardcode-to-be-eliminated/sources.ts +0 -3
- package/src/hardcode-to-be-eliminated/users.ts +0 -3
- package/src/main-tab/main-tab.ts +0 -210
- package/src/sdf-tab/sdf-tab.ts +0 -163
- package/src/sdf-tab/sequence-codes-tools.ts +0 -347
- package/src/utils/const.ts +0 -0
- package/src/utils/helpers.ts +0 -28
- package/src/utils/parse.ts +0 -27
- package/src/utils/sdf-add-columns.ts +0 -118
- package/src/utils/sdf-save-table.ts +0 -56
- package/src/utils/structures-works/draw-molecule.ts +0 -84
- package/src/utils/structures-works/from-monomers.ts +0 -266
- package/test-SequenceTranslator-6288c2fbe346-695b7b55.html +0 -259
- package/vendors/openchemlib-full.js +0 -293
package/.eslintrc.json
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package/CHANGELOG.md
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package/detectors.js
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/**
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* The class contains semantic type detectors.
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* Detectors are functions tagged with `DG.FUNC_TYPES.SEM_TYPE_DETECTOR`.
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* See also: https://datagrok.ai/help/develop/how-to/define-semantic-type-detectors
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* The class name is comprised of <PackageName> and the `PackageDetectors` suffix.
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* Follow this naming convention to ensure that your detectors are properly loaded.
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*/
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