@datagrok/sequence-translator 0.0.9 → 1.0.1

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Files changed (15) hide show
  1. package/README.md +19 -11
  2. package/css/style.css +18 -0
  3. package/dist/package-test.js +2454 -0
  4. package/dist/package.js +5234 -0
  5. package/package.json +19 -10
  6. package/src/defineAxolabsPattern.ts +58 -55
  7. package/src/package-test.ts +1 -1
  8. package/src/package.ts +53 -50
  9. package/src/salts.ts +2 -2
  10. package/src/structures-works/from-monomers.ts +20 -12
  11. package/src/structures-works/mol-transformations.ts +34 -18
  12. package/src/structures-works/save-sense-antisense.ts +5 -2
  13. package/src/structures-works/sequence-codes-tools.ts +192 -93
  14. package/src/tests/smiles-tests.ts +31 -27
  15. package/{test-SequenceTranslator-2e08c8e54bde-1367d435.html → test-SequenceTranslator-089b6516ed77-2280593f.html} +2 -2
package/src/tests/smiles-tests.ts CHANGED
@@ -1,5 +1,6 @@
1
1
  import {category, expect, test} from '@datagrok-libraries/utils/src/test';
2
2
  import {sequenceToSmiles} from '../structures-works/from-monomers';
3
+ import {SYNTHESIZERS} from '../structures-works/map';
3
4
 
4
5
  category('sequence-translator', () => {
5
6
  test('AGGTCCTCTTGACTTAGGCC', async () => {
@@ -23,7 +24,7 @@ category('sequence-translator', () => {
23
24
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(O)' +
24
25
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))C[C@@H]1OP(=O)(O)OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))C[C@@H]1O';
25
26
 
26
- expect(sequenceToSmiles('AGGTCCTCTTGACTTAGGCC'), expected);
27
+ expect(sequenceToSmiles('AGGTCCTCTTGACTTAGGCC', false, SYNTHESIZERS.RAW_NUCLEOTIDES), expected);
27
28
  });
28
29
 
29
30
  test('invabasic/galnac1', async () => {
@@ -34,7 +35,7 @@ category('sequence-translator', () => {
34
35
  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
35
36
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
36
37
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
37
- expect(sequenceToSmiles('(invabasic)sgg(invabasic)(GalNAc-2-JNJ)'), expected);
38
+ expect(sequenceToSmiles('(invabasic)sgg(invabasic)(GalNAc-2-JNJ)', false, SYNTHESIZERS.AXOLABS), expected);
38
39
  });
39
40
 
40
41
  test('invabasic/galnac2', async () => {
@@ -45,7 +46,7 @@ category('sequence-translator', () => {
45
46
  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
46
47
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
47
48
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
48
- expect(sequenceToSmiles('(invabasic)sgsg(invabasic)(GalNAc-2-JNJ)'), expected);
49
+ expect(sequenceToSmiles('(invabasic)sgsg(invabasic)(GalNAc-2-JNJ)', false, SYNTHESIZERS.AXOLABS), expected);
49
50
  });
50
51
 
51
52
  test('invabasic/galnac3', async () => {
@@ -56,7 +57,7 @@ category('sequence-translator', () => {
56
57
  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
57
58
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
58
59
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
59
- expect(sequenceToSmiles('(invabasic)sggs(invabasic)(GalNAc-2-JNJ)'), expected);
60
+ expect(sequenceToSmiles('(invabasic)sggs(invabasic)(GalNAc-2-JNJ)', false, SYNTHESIZERS.AXOLABS), expected);
60
61
  });
61
62
 
62
63
  test('invabasic/galnac4', async () => {
@@ -67,7 +68,7 @@ category('sequence-translator', () => {
67
68
  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
68
69
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
69
70
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
70
- expect(sequenceToSmiles('(invabasic)sgg(invabasic)s(GalNAc-2-JNJ)'), expected);
71
+ expect(sequenceToSmiles('(invabasic)sgg(invabasic)s(GalNAc-2-JNJ)', false, SYNTHESIZERS.AXOLABS), expected);
71
72
  });
72
73
 
73
74
  test('usCfCfUfGfAf', async () => {
@@ -77,7 +78,7 @@ category('sequence-translator', () => {
77
78
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1OP(=O)(O)' +
78
79
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](F)[C@@H]1OP(=O)(O)' +
79
80
  'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](F)[C@@H]1O';
80
- expect(sequenceToSmiles('usCfCfUfGfAf'), expected);
81
+ expect(sequenceToSmiles('usCfCfUfGfAf', false, SYNTHESIZERS.AXOLABS), expected);
81
82
  });
82
83
 
83
84
  test('usAfsusgsgsg', async () => {
@@ -87,7 +88,7 @@ category('sequence-translator', () => {
87
88
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(S)' +
88
89
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(S)' +
89
90
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1O';
90
- expect(sequenceToSmiles('usAfsusgsgsg'), expected);
91
+ expect(sequenceToSmiles('usAfsusgsgsg', false, SYNTHESIZERS.AXOLABS), expected);
91
92
  });
92
93
 
93
94
  test('UfUfUfsCfsuacg', async () => {
@@ -99,7 +100,7 @@ category('sequence-translator', () => {
99
100
  'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(O)' +
100
101
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
101
102
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1O';
102
- expect(sequenceToSmiles('UfUfUfsCfsuacg'), expected);
103
+ expect(sequenceToSmiles('UfUfUfsCfsuacg', false, SYNTHESIZERS.AXOLABS), expected);
103
104
  });
104
105
 
105
106
  test('susususauasu', async () => {
@@ -110,7 +111,7 @@ category('sequence-translator', () => {
110
111
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
111
112
  'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(S)' +
112
113
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1O';
113
- expect(sequenceToSmiles('susususauasu'), expected);
114
+ expect(sequenceToSmiles('susususauasu', false, SYNTHESIZERS.AXOLABS), expected);
114
115
  });
115
116
 
116
117
  test('CfGfCfsGfsCf', async () => {
@@ -119,7 +120,7 @@ category('sequence-translator', () => {
119
120
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](F)[C@@H]1OP(=O)(S)' +
120
121
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](F)[C@@H]1OP(=O)(S)' +
121
122
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](F)[C@@H]1O';
122
- expect(sequenceToSmiles('CfGfCfsGfsCf'), expected);
123
+ expect(sequenceToSmiles('CfGfCfsGfsCf', false, SYNTHESIZERS.AXOLABS), expected);
123
124
  });
124
125
 
125
126
  test('acacacsacsac', async () => {
@@ -133,7 +134,7 @@ category('sequence-translator', () => {
133
134
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1OP(=O)(S)' +
134
135
  'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(O)' +
135
136
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1O';
136
- expect(sequenceToSmiles('acacacsacsac'), expected);
137
+ expect(sequenceToSmiles('acacacsacsac', false, SYNTHESIZERS.AXOLABS), expected);
137
138
  });
138
139
 
139
140
  test('cccgggusug', async () => {
@@ -147,7 +148,7 @@ category('sequence-translator', () => {
147
148
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(S)' +
148
149
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
149
150
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1O';
150
- expect(sequenceToSmiles('cccgggusug'), expected);
151
+ expect(sequenceToSmiles('cccgggusug', false, SYNTHESIZERS.AXOLABS), expected);
151
152
  });
152
153
 
153
154
  test('UfAfCfGfGfCfAfUf', async () => {
@@ -160,7 +161,7 @@ category('sequence-translator', () => {
160
161
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](F)[C@@H]1OP(=O)(O)' +
161
162
  'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](F)[C@@H]1OP(=O)(O)' +
162
163
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1O';
163
- expect(sequenceToSmiles('UfAfCfGfGfCfAfUf'), expected);
164
+ expect(sequenceToSmiles('UfAfCfGfGfCfAfUf', false, SYNTHESIZERS.AXOLABS), expected);
164
165
  });
165
166
 
166
167
  test('(invabasic)sucuCfuUf', async () => {
@@ -172,7 +173,7 @@ category('sequence-translator', () => {
172
173
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](F)[C@@H]1OP(=O)(O)' +
173
174
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
174
175
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1O';
175
- expect(sequenceToSmiles('(invabasic)sucuCfuUf'), expected);
176
+ expect(sequenceToSmiles('(invabasic)sucuCfuUf', false, SYNTHESIZERS.AXOLABS), expected);
176
177
  });
177
178
 
178
179
  test('(invabasic)sAfgcugUf', async () => {
@@ -184,7 +185,7 @@ category('sequence-translator', () => {
184
185
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
185
186
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(O)' +
186
187
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1O';
187
- expect(sequenceToSmiles('(invabasic)sAfgcugUf'), expected);
188
+ expect(sequenceToSmiles('(invabasic)sAfgcugUf', false, SYNTHESIZERS.AXOLABS), expected);
188
189
  });
189
190
 
190
191
  test('(invabasic)cuCfuUfsc', async () => {
@@ -196,7 +197,7 @@ category('sequence-translator', () => {
196
197
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
197
198
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](F)[C@@H]1OP(=O)(S)' +
198
199
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1O';
199
- expect(sequenceToSmiles('(invabasic)cuCfuUfsc'), expected);
200
+ expect(sequenceToSmiles('(invabasic)cuCfuUfsc', false, SYNTHESIZERS.AXOLABS), expected);
200
201
  });
201
202
 
202
203
  test('(invabasic)scususu(GalNAc-2-JNJ)', async () => {
@@ -209,7 +210,7 @@ category('sequence-translator', () => {
209
210
  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
210
211
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
211
212
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
212
- expect(sequenceToSmiles('(invabasic)scususu(GalNAc-2-JNJ)'), expected);
213
+ expect(sequenceToSmiles('(invabasic)scususu(GalNAc-2-JNJ)', false, SYNTHESIZERS.AXOLABS), expected);
213
214
  });
214
215
 
215
216
  test('(invabasic)usAfsucuCfuUfAfgcugUfgCfacususu', async () => {
@@ -236,7 +237,7 @@ category('sequence-translator', () => {
236
237
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(S)' +
237
238
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(S)' +
238
239
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1O';
239
- expect(sequenceToSmiles('(invabasic)usAfsucuCfuUfAfgcugUfgCfacususu'), expected);
240
+ expect(sequenceToSmiles('(invabasic)usAfsucuCfuUfAfgcugUfgCfacususu', false, SYNTHESIZERS.AXOLABS), expected);
240
241
  });
241
242
 
242
243
  test('(invabasic)asacgGfuGfCfAfacucuauuca', async () => {
@@ -261,7 +262,7 @@ category('sequence-translator', () => {
261
262
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
262
263
  'OC[C@H]1O[C@@H](N2C=CC(N)=NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
263
264
  'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1O';
264
- expect(sequenceToSmiles('(invabasic)asacgGfuGfCfAfacucuauuca'), expected);
265
+ expect(sequenceToSmiles('(invabasic)asacgGfuGfCfAfacucuauuca', false, SYNTHESIZERS.AXOLABS), expected);
265
266
  });
266
267
 
267
268
  test('(invabasic)scsgguGfcAfAfCfucuauucuga', async () => {
@@ -286,7 +287,7 @@ category('sequence-translator', () => {
286
287
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
287
288
  'OC[C@H]1O[C@@H](N2C3N=C(N)NC(=O)C=3N=C2)[C@H](OC)[C@@H]1OP(=O)(O)' +
288
289
  'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1O';
289
- expect(sequenceToSmiles('(invabasic)scsgguGfcAfAfCfucuauucuga'), expected);
290
+ expect(sequenceToSmiles('(invabasic)scsgguGfcAfAfCfucuauucuga', false, SYNTHESIZERS.AXOLABS), expected);
290
291
  });
291
292
 
292
293
  test('(invabasic)scsaacUfcUfAfUfucuggacuua', async () => {
@@ -311,7 +312,7 @@ category('sequence-translator', () => {
311
312
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
312
313
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
313
314
  'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1O';
314
- expect(sequenceToSmiles('(invabasic)scsaacUfcUfAfUfucuggacuua'), expected);
315
+ expect(sequenceToSmiles('(invabasic)scsaacUfcUfAfUfucuggacuua', false, SYNTHESIZERS.AXOLABS), expected);
315
316
  });
316
317
 
317
318
  test('(invabasic)sasacuCfuAfUfUfcuggacuuua', async () => {
@@ -336,7 +337,7 @@ category('sequence-translator', () => {
336
337
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
337
338
  'OC[C@H]1O[C@@H](N2C=CC(=O)NC2(=O))[C@H](OC)[C@@H]1OP(=O)(O)' +
338
339
  'OC[C@H]1O[C@@H](N2C3N=CN=C(N)C=3N=C2)[C@H](OC)[C@@H]1O';
339
- expect(sequenceToSmiles('(invabasic)sasacuCfuAfUfUfcuggacuuua'), expected);
340
+ expect(sequenceToSmiles('(invabasic)sasacuCfuAfUfUfcuggacuuua', false, SYNTHESIZERS.AXOLABS), expected);
340
341
  });
341
342
 
342
343
  test('(invabasic)usAfscug(invabasic)(GalNAc-2-JNJ)', async () => {
@@ -350,7 +351,7 @@ category('sequence-translator', () => {
350
351
  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
351
352
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
352
353
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
353
- expect(sequenceToSmiles('(invabasic)usAfscug(invabasic)(GalNAc-2-JNJ)'), expected);
354
+ expect(sequenceToSmiles('(invabasic)usAfscug(invabasic)(GalNAc-2-JNJ)', false, SYNTHESIZERS.AXOLABS), expected);
354
355
  });
355
356
 
356
357
  test('(invabasic)sasuaaCfcUf(GalNAc-2-JNJ)', async () => {
@@ -365,7 +366,7 @@ category('sequence-translator', () => {
365
366
  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
366
367
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
367
368
  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
368
- expect(sequenceToSmiles('(invabasic)sasuaaCfcUf(GalNAc-2-JNJ)'), expected);
369
+ expect(sequenceToSmiles('(invabasic)sasuaaCfcUf(GalNAc-2-JNJ)', false, SYNTHESIZERS.AXOLABS), expected);
369
370
  });
370
371
 
371
372
  test('(invabasic)sasuaaCfcUfCfUfuguaguuaua(GalNAc-2-JNJ)', async () => {
@@ -392,7 +393,8 @@ category('sequence-translator', () => {
392
393
  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
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  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
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  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
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- expect(sequenceToSmiles('(invabasic)sasuaaCfcUfCfUfuguaguuaua(GalNAc-2-JNJ)'), expected);
396
+ expect(sequenceToSmiles('(invabasic)sasuaaCfcUfCfUfuguaguuaua(GalNAc-2-JNJ)', false, SYNTHESIZERS.AXOLABS),
397
+ expected);
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  });
397
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  test('(invabasic)scsaucacguUfGfCfagccgucuua(invabasic)(GalNAc-2-JNJ)', async () => {
@@ -422,7 +424,8 @@ category('sequence-translator', () => {
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  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
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  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
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  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
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- expect(sequenceToSmiles('(invabasic)scsaucacguUfGfCfagccgucuua(invabasic)(GalNAc-2-JNJ)'), expected);
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+ expect(sequenceToSmiles('(invabasic)scsaucacguUfGfCfagccgucuua(invabasic)(GalNAc-2-JNJ)',
428
+ false, SYNTHESIZERS.AXOLABS), expected);
426
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  });
427
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  test('(invabasic)susguuUfgCfCfUfacaucuacua(GalNAc-2-JNJ)', async () => {
@@ -449,6 +452,7 @@ category('sequence-translator', () => {
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  'OCC(O)CNC(=O)CCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
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  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)' +
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  '(COCCC(=O)NCCCNC(=O)CCCCOC2OC(CO)C(O)C(O)C2NC(=O)C)';
452
- expect(sequenceToSmiles('(invabasic)susguuUfgCfCfUfacaucuacua(GalNAc-2-JNJ)'), expected);
455
+ expect(sequenceToSmiles('(invabasic)susguuUfgCfCfUfacaucuacua(GalNAc-2-JNJ)', false, SYNTHESIZERS.AXOLABS),
456
+ expected);
453
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  });
454
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  });
package/{test-SequenceTranslator-2e08c8e54bde-1367d435.html → test-SequenceTranslator-089b6516ed77-2280593f.html} RENAMED
@@ -1,4 +1,4 @@
1
- <html><head><meta charset="utf-8"/><title>SequenceTranslator Test Report. Datagrok version datagrok/datagrok:latest SHA=2e08c8e54bde. Commit 1367d435.</title><style type="text/css">html,
1
+ <html><head><meta charset="utf-8"/><title>SequenceTranslator Test Report. Datagrok version datagrok/datagrok:latest SHA=089b6516ed77. Commit 2280593f.</title><style type="text/css">html,
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  body {
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  font-family: Arial, Helvetica, sans-serif;
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  font-size: 1rem;
@@ -229,7 +229,7 @@ header {
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  font-size: 1rem;
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  padding: 0 0.5rem;
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  }
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">SequenceTranslator Test Report. Datagrok version datagrok/datagrok:latest SHA=2e08c8e54bde. Commit 1367d435.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-04-20 13:02:23</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/remote.test.ts</div><div class="suite-time warn">18.061s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">0.524s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Evaluation failed: Unable to find JS function "test"
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+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">SequenceTranslator Test Report. Datagrok version datagrok/datagrok:latest SHA=089b6516ed77. Commit 2280593f.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-06-09 16:25:38</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/remote.test.ts</div><div class="suite-time warn">13.491s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">0.623s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Evaluation failed: Unable to find JS function "test"
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  at ExecutionContext._evaluateInternal (/home/runner/work/public/public/packages/SequenceTranslator/node_modules/puppeteer/src/common/ExecutionContext.ts:273:13)
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)
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  at ExecutionContext.evaluate (/home/runner/work/public/public/packages/SequenceTranslator/node_modules/puppeteer/src/common/ExecutionContext.ts:140:12)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/test-node.ts:62:11)