@datagrok/peptides 1.22.0 → 1.22.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +6 -13
- package/dist/package-test.js +1 -1
- package/dist/package-test.js.map +1 -1
- package/dist/package.js +1 -1
- package/dist/package.js.map +1 -1
- package/package.json +2 -2
- package/src/demo/fasta.ts +2 -6
- package/src/model.ts +2 -3
- package/src/utils/cell-renderer.ts +0 -1
- package/src/utils/tooltips.ts +2 -2
- package/src/viewers/logo-summary.ts +3 -7
- package/src/viewers/sar-viewer.ts +0 -17
- package/src/widgets/distribution.ts +2 -2
- package/test-console-output-1.log +203 -131
- package/test-record-1.mp4 +0 -0
- package/files/help/logo-summary-table.md +0 -23
- package/files/help/monomer-position.md +0 -31
- package/files/help/most-potent-residues.md +0 -17
package/test-record-1.mp4
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# Logo Summary Table
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Logo Summary Table shows WebLogo, activity distribution and statistics for each of the clusters in data. Statistics include
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mean difference, p-value, count and ratio.
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# Responsiveness
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Logo Summary Table reacts to filters applied to the data and shows only clusters of filtered rows. In this case WebLogo,
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activity distribution and statistics are calculated with respect to filtered rows.
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## Interactivity
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Logo Summary Tabl viewer selection follows default pattern as any other Datagrok viewer.
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| Click | Single selection of Cluster |
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| Ctrl+Click | Toggle Cluster selection state|
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| Shift+Click | Add Cluster to selection |
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| Ctrl+Shift+Click | Deselect Cluster |
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Hovering over any cell will show tooltip with distribution and statistics of the monomer-position and highlight corresponding
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points on other viewers.
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# Monomer-Position viewer
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Monomer-Position viewer is a matrix-like grid, where rows correspond to monomers and columns to positions. This viewer works in two modes: Mutation Cliffs and Invariant Map.
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## Mutation Cliffs mode
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Mutation Cliffs mode highlights the most signficant monomer-position pairs. The significance of the monomer-position is
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color-coded with blue for negative mean difference of the sequences containing monomer-position vs. rest of the sequences,
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and red for positive mean difference. Color intensity is defined by p-value. The size of the circle represents the value of mean difference:
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smaller circles represent low mean difference values; large circles represent hight mean difference values. Some of the
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cells contain number of unique sequences for given monomer-position, that form Mutation Cliff pairs.
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## Invariant Map mode
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Invariant Map mode shows number of sequences that contain monomer-position. Cells are color-coded based on the aggregation
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function on some numeric column. By default average scaled activity values for given monomer-position is used. Column and
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aggregation function can be changed in viewer properties.
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## Interactivity
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Monomer-Position viewer selection follows default pattern as any other Datagrok viewer.
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|------------------|----------------------------------------|
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| Click | Single selection of Monomer-Position |
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| Ctrl+Click | Toggle Monomer-Position selection state|
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| Shift+Click | Add Monomer-Position to selection |
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| Ctrl+Shift+Click | Deselect Monomer-Position |
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Hovering over any cell will show tooltip with distribution and statistics of the monomer-position and highlight corresponding
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points on other viewers.
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# Most Potent Residues
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Most Potent Residues viewer for each position finds the most potent monomer and shows statistics for the monomer-position. Statistics include mean difference, p-value, count and ratio.
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## Interactivity
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Most Potent Residues viewer selection follows default pattern as any other Datagrok viewer.
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|------------------|----------------------------------------|
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| Click | Single selection of Monomer-Position |
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| Ctrl+Click | Toggle Monomer-Position selection state|
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| Shift+Click | Add Monomer-Position to selection |
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| Ctrl+Shift+Click | Deselect Monomer-Position |
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Hovering over any cell will show tooltip with distribution and statistics of the monomer-position and highlight corresponding
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points on other viewers.
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