@datagrok/peptides 1.22.0 → 1.22.2

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Files changed (18) hide show
  1. package/README.md +6 -13
  2. package/dist/package-test.js +1 -1
  3. package/dist/package-test.js.map +1 -1
  4. package/dist/package.js +1 -1
  5. package/dist/package.js.map +1 -1
  6. package/package.json +2 -2
  7. package/src/demo/fasta.ts +2 -6
  8. package/src/model.ts +2 -3
  9. package/src/utils/cell-renderer.ts +0 -1
  10. package/src/utils/tooltips.ts +2 -2
  11. package/src/viewers/logo-summary.ts +3 -7
  12. package/src/viewers/sar-viewer.ts +0 -17
  13. package/src/widgets/distribution.ts +2 -2
  14. package/test-console-output-1.log +203 -131
  15. package/test-record-1.mp4 +0 -0
  16. package/files/help/logo-summary-table.md +0 -23
  17. package/files/help/monomer-position.md +0 -31
  18. package/files/help/most-potent-residues.md +0 -17
package/README.md CHANGED
@@ -5,25 +5,18 @@ Provides sequence-activity relationship analysis for peptides.
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  ## Detection and usage
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  Once a dataframe is opened with Datagrok, the column(s) containing peptides are detected automatically.
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- Each amino acid is rendered with a different color, which helps to visually identify patterns.
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+ Each amino acid is rendered with a different color based on used monomer library, which helps to visually identify patterns.
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  Clicking on the column header brings up the options to launch peptide-specific tools, such as [SAR](#sar)
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- and [Peptide space](#peptides-space).
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+ and others.
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  ## Sar
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  Wiki: _Structure-Activity Relationship (SAR) is an approach designed to find relationships between chemical structure
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  (or structural-related properties) and biological activity (or target property) of studied compounds._
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- Peptides SAR is an interactive analysis tool to help identify point mutations that cause large change in
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- activity. Given a `peptide` column with aligned sequences (max length N, number of unique amino acids A)
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- and `activity` column, it produces an N*A dataframe where (n, a) element contains a measure of the change
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- of activity caused by mutating the amino acid at position n to a.
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+ Peptides SAR is an interactive analysis tool to help identify point mutations and residues that cause major change in
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+ activity. Analysis can be triggered from context menu of a peptide column or from top menu `Bio | Analyze | SAR`.
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+ You can choose the peptides column, activity column, configure scaling, clustering and other options.
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+ You can read more about the tool in our [help section](https://datagrok.ai/help/datagrok/solutions/domains/bio/peptides-sar).
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- [Issue tracker](https://github.com/datagrok-ai/public/issues/93)
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-
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- ## Peptides space
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-
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- Visualizes a collection of peptides in 2-dimensional space, using [t-SNE](https://en.wikipedia.org/wiki/T-distributed_stochastic_neighbor_embedding) with the [edit distance](https://en.wikipedia.org/wiki/Edit_distance) function.
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-
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- [Issue tracker](https://github.com/datagrok-ai/public/issues/93)
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  [Datagrok community: Macromolecules](https://community.datagrok.ai/t/macromolecules-updates/661/1)