@datagrok/bio 2.9.0 → 2.10.0

package/CHANGELOG.md

@@ -1,5 +1,20 @@
 # Bio changelog
 
+## 2.10.0 (2023-09-06)
+
+### Features
+
+* GetRegion for Macromolecule.
+* Top menu Bio | Convert | GetRegion dialog.
+* Add tests for UnitsHandler.getRegion.
+* Maintain `.positionNames` tag for GetRegion derived column.
+* Use `.regions` tag annotation for GetRegion dialog.
+* Fix mistyping top menu path for Identity scoring.
+
+### Bug fixes
+
+* Fixed UnitsHandler.posList length.
+
 ## 2.9.0 (2023-08-30)
 
 ### Features
@@ -76,7 +91,7 @@ This release focuses on improvements and bug fixes.
 * Added separator support for **Sequence Space** and **Activity Cliffs**.
 * Tooltip: shows monomer atomic structure for macromolecules.
 * For macromolecule cells, added the ability to show composition ratios in the property panel.
-* **Top menu**: organized the items into groups **SAR**, **Structure**, **Atomic level**, and **Search**. 
+* **Top menu**: organized the items into groups **SAR**, **Structure**, **Atomic level**, and **Search**.
 
 ### Bug Fixes
 

package/dist/452.js

@@ -1,2 +1,2 @@
-"use strict";(self.webpackChunkbio=self.webpackChunkbio||[]).push([[452],{5697:(t,n,u)=>{u.d(n,{Dz:()=>h,KR:()=>o,MI:()=>l,NB:()=>s,UX:()=>c,WI:()=>a,Zd:()=>i,_h:()=>e,aW:()=>C,bX:()=>m,fX:()=>k,s:()=>g,yU:()=>f});var r=u(1040);function o(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount();if(0==u)return 1;const r=t.andWithCountBits(n,!0);return r/(u-r)}(t,n))}function e(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount();return 0==u?0:2*t.andWithCountBits(n,!0)/u}(t,n))}function i(t,n){return d(function(t,n){const u=t.trueCount()*n.trueCount();return 0==u?0:t.andWithCountBits(n,!0)/Math.sqrt(u)}(t,n))}function a(t,n){return Math.sqrt(t.trueCount()+n.trueCount()-2*t.andWithCountBits(n,!0))}function c(t,n){return t.trueCount()+n.trueCount()-2*t.andWithCountBits(n,!0)}function s(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount(),r=t.andWithCountBits(n,!0);return r/(2*u-3*r)}(t,n))}function g(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount(),r=t.trueCount()*n.trueCount();return 0==r?0:t.andWithCountBits(n,!0)*u/(2*r)}(t,n))}function C(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount(),r=t.trueCount()*n.trueCount();return 0==r?0:(t.andWithCountBits(n,!0)*u-r)/r}(t,n))}function f(t,n){return d(function(t,n){const u=Math.min(t.trueCount(),n.trueCount());return 0==u?0:t.andWithCountBits(n,!0)/u}(t,n))}function h(t,n){return d(function(t,n){const u=Math.max(t.trueCount(),n.trueCount());return 0==u?0:t.andWithCountBits(n,!0)/u}(t,n))}function k(t,n){return d(function(t,n){return 0==t.length?0:t.andWithCountBits(n,!0)/t.length}(t,n))}function l(t,n){return d(function(t,n){const u=t.andWithCountBits(n,!0),r=t.countBits(!0)+n.countBits(!0),o=t.length,e=o-r+u;return u==o||e==o?1:u/r+e/(2*o-r)}(t,n))}function d(t){return 1/t-1}function m(t,n){return Math.abs(t-n)}r.gk.Tanimoto,r.gk.Dice,r.gk.Asymmetric,r.gk.BraunBlanquet,r.gk.Cosine,r.gk.Kulczynski,r.gk.McConnaughey,r.gk.RogotGoldberg,r.gk.Russel,r.gk.Sokal,r.gk.Hamming,r.gk.Euclidean,r.gk.Tanimoto,r.gk.Dice,r.gk.Asymmetric,r.gk.BraunBlanquet,r.gk.Cosine,r.gk.Kulczynski,r.gk.McConnaughey,r.gk.RogotGoldberg,r.gk.Russel,r.gk.Sokal,r.gk.Hamming,r.gk.Euclidean,r.gk.Tanimoto,r.gk.Dice,r.gk.Cosine,r.gk.Tanimoto,r.gk.Asymmetric,r.gk.Cosine,r.gk.Sokal},489:(t,n,u)=>{u.d(n,{U:()=>r.U,o:()=>r.o});var r=u(5540)},5540:(t,n,u)=>{u.d(n,{U:()=>r,o:()=>a});var r,o=u(779),e=u(458),i=u(6683);!function(t){t.HAMMING="Hamming",t.LEVENSHTEIN="Levenshtein",t.NEEDLEMANN_WUNSCH="Needlemann-Wunsch"}(r||(r={}));const a={[r.HAMMING]:o.j,[r.LEVENSHTEIN]:e.r,[r.NEEDLEMANN_WUNSCH]:i.n}},3659:(t,n,u)=>{u.d(n,{OW:()=>r});class r extends Float32Array{}},3979:(t,n)=>{n.H$=void 0,n.H$=function(t,n,u){var r=function(t,n,u){if(0===t.length||0===n.length)return 0;if(u&&!u.caseSensitive&&(t=t.toUpperCase(),n=n.toUpperCase()),t===n)return 1;for(var r=0,o=t.length,e=n.length,i=Math.floor(Math.max(o,e)/2)-1,a=new Array(o),c=new Array(e),s=0;s<o;s++)for(var g=Math.max(0,s-i);g<=Math.min(e,s+i+1);g++)if(!a[s]&&!c[g]&&t[s]===n[g]){++r,a[s]=c[g]=!0;break}if(0===r)return 0;var C=0,f=0;for(s=0;s<o;s++)if(a[s]){for(;!c[f];)f++;t.charAt(s)!==n.charAt(f++)&&C++}return(r/o+r/e+(r-(C/=2))/r)/3}(t,n,u),o=0;if(r>.7){for(var e=Math.min(t.length,n.length),i=0;t[i]===n[i]&&i<4&&i<e;)++o,i++;r+=.1*o*(1-r)}return r}}}]);
+"use strict";(self.webpackChunkbio=self.webpackChunkbio||[]).push([[452],{5697:(t,n,u)=>{u.d(n,{Dz:()=>h,KR:()=>o,MI:()=>l,NB:()=>s,UX:()=>c,WI:()=>a,Zd:()=>i,_h:()=>e,aW:()=>C,bX:()=>m,fX:()=>k,s:()=>g,yU:()=>f});var r=u(1040);function o(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount();if(0==u)return 1;const r=t.andWithCountBits(n,!0);return r/(u-r)}(t,n))}function e(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount();return 0==u?0:2*t.andWithCountBits(n,!0)/u}(t,n))}function i(t,n){return d(function(t,n){const u=t.trueCount()*n.trueCount();return 0==u?0:t.andWithCountBits(n,!0)/Math.sqrt(u)}(t,n))}function a(t,n){return Math.sqrt(t.trueCount()+n.trueCount()-2*t.andWithCountBits(n,!0))}function c(t,n){return t.trueCount()+n.trueCount()-2*t.andWithCountBits(n,!0)}function s(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount(),r=t.andWithCountBits(n,!0);return r/(2*u-3*r)}(t,n))}function g(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount(),r=t.trueCount()*n.trueCount();return 0==r?0:t.andWithCountBits(n,!0)*u/(2*r)}(t,n))}function C(t,n){return d(function(t,n){const u=t.trueCount()+n.trueCount(),r=t.trueCount()*n.trueCount();return 0==r?0:(t.andWithCountBits(n,!0)*u-r)/r}(t,n))}function f(t,n){return d(function(t,n){const u=Math.min(t.trueCount(),n.trueCount());return 0==u?0:t.andWithCountBits(n,!0)/u}(t,n))}function h(t,n){return d(function(t,n){const u=Math.max(t.trueCount(),n.trueCount());return 0==u?0:t.andWithCountBits(n,!0)/u}(t,n))}function k(t,n){return d(function(t,n){return 0==t.length?0:t.andWithCountBits(n,!0)/t.length}(t,n))}function l(t,n){return d(function(t,n){const u=t.andWithCountBits(n,!0),r=t.countBits(!0)+n.countBits(!0),o=t.length,e=o-r+u;return u==o||e==o?1:u/r+e/(2*o-r)}(t,n))}function d(t){return 0===t?3402823e32:1/t-1}function m(t,n){return Math.abs(t-n)}r.gk.Tanimoto,r.gk.Dice,r.gk.Asymmetric,r.gk.BraunBlanquet,r.gk.Cosine,r.gk.Kulczynski,r.gk.McConnaughey,r.gk.RogotGoldberg,r.gk.Russel,r.gk.Sokal,r.gk.Hamming,r.gk.Euclidean,r.gk.Tanimoto,r.gk.Dice,r.gk.Asymmetric,r.gk.BraunBlanquet,r.gk.Cosine,r.gk.Kulczynski,r.gk.McConnaughey,r.gk.RogotGoldberg,r.gk.Russel,r.gk.Sokal,r.gk.Hamming,r.gk.Euclidean,r.gk.Tanimoto,r.gk.Dice,r.gk.Cosine,r.gk.Tanimoto,r.gk.Asymmetric,r.gk.Cosine,r.gk.Sokal},489:(t,n,u)=>{u.d(n,{U:()=>r.U,o:()=>r.o});var r=u(5540)},5540:(t,n,u)=>{u.d(n,{U:()=>r,o:()=>a});var r,o=u(779),e=u(458),i=u(6683);!function(t){t.HAMMING="Hamming",t.LEVENSHTEIN="Levenshtein",t.NEEDLEMANN_WUNSCH="Needlemann-Wunsch"}(r||(r={}));const a={[r.HAMMING]:o.j,[r.LEVENSHTEIN]:e.r,[r.NEEDLEMANN_WUNSCH]:i.n}},3659:(t,n,u)=>{u.d(n,{OW:()=>r});class r extends Float32Array{}},3979:(t,n)=>{n.H$=void 0,n.H$=function(t,n,u){var r=function(t,n,u){if(0===t.length||0===n.length)return 0;if(u&&!u.caseSensitive&&(t=t.toUpperCase(),n=n.toUpperCase()),t===n)return 1;for(var r=0,o=t.length,e=n.length,i=Math.floor(Math.max(o,e)/2)-1,a=new Array(o),c=new Array(e),s=0;s<o;s++)for(var g=Math.max(0,s-i);g<=Math.min(e,s+i+1);g++)if(!a[s]&&!c[g]&&t[s]===n[g]){++r,a[s]=c[g]=!0;break}if(0===r)return 0;var C=0,f=0;for(s=0;s<o;s++)if(a[s]){for(;!c[f];)f++;t.charAt(s)!==n.charAt(f++)&&C++}return(r/o+r/e+(r-(C/=2))/r)/3}(t,n,u),o=0;if(r>.7){for(var e=Math.min(t.length,n.length),i=0;t[i]===n[i]&&i<4&&i<e;)++o,i++;r+=.1*o*(1-r)}return r}}}]);
 //# sourceMappingURL=452.js.map

package/dist/452.js.map

@@ -1 +1 @@
-{"version":3,"file":"452.js","mappings":"oOA+CO,SAASA,EAAiBC,EAAGC,GAChC,OAAOC,EARJ,SAA4BF,EAAGC,GAClC,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAChC,GAAa,GAATD,EACA,OAAO,EACX,MAAME,EAASL,EAAEM,iBAAiBL,GAAG,GACrC,OAAOI,GAAUF,EAAQE,EAC7B,CAEqCE,CAAmBP,EAAGC,GAC3D,CAQO,SAASO,EAAaR,EAAGC,GAC5B,OAAOC,EARJ,SAAwBF,EAAGC,GAC9B,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAChC,OAAa,GAATD,EACO,EAEJ,EADQH,EAAEM,iBAAiBL,GAAG,GACjBE,CACxB,CAEqCM,CAAeT,EAAGC,GACvD,CAQO,SAASS,EAAeV,EAAGC,GAC9B,OAAOC,EARJ,SAA0BF,EAAGC,GAChC,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAChC,OAAa,GAATD,EACO,EACIH,EAAEM,iBAAiBL,GAAG,GACrBU,KAAKC,KAAKT,EAC9B,CAEqCU,CAAiBb,EAAGC,GACzD,CAIO,SAASa,EAAkBd,EAAGC,GACjC,OAAOU,KAAKC,KAAKZ,EAAEI,YAAcH,EAAEG,YAAc,EAAIJ,EAAEM,iBAAiBL,GAAG,GAC/E,CAIO,SAASc,EAAgBf,EAAGC,GAC/B,OAAOD,EAAEI,YAAcH,EAAEG,YAAc,EAAIJ,EAAEM,iBAAiBL,GAAG,EACrE,CAMO,SAASe,EAAchB,EAAGC,GAC7B,OAAOC,EANJ,SAAyBF,EAAGC,GAC/B,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAC1BC,EAASL,EAAEM,iBAAiBL,GAAG,GACrC,OAAOI,GAAU,EAAIF,EAAQ,EAAIE,EACrC,CAEqCY,CAAgBjB,EAAGC,GACxD,CASO,SAASiB,EAAmBlB,EAAGC,GAClC,OAAOC,EATJ,SAA8BF,EAAGC,GACpC,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAC1Be,EAAYnB,EAAEI,YAAcH,EAAEG,YACpC,OAAiB,GAAbe,EACO,EACInB,EAAEM,iBAAiBL,GAAG,GACpBE,GAAU,EAAIgB,EACnC,CAEqCC,CAAqBpB,EAAGC,GAC7D,CASO,SAASoB,EAAqBrB,EAAGC,GACpC,OAAOC,EATJ,SAAgCF,EAAGC,GACtC,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAC1Be,EAAYnB,EAAEI,YAAcH,EAAEG,YACpC,OAAiB,GAAbe,EACO,GACInB,EAAEM,iBAAiBL,GAAG,GACpBE,EAAQgB,GAAaA,CAC1C,CAEqCG,CAAuBtB,EAAGC,GAC/D,CAQO,SAASsB,EAAmBvB,EAAGC,GAClC,OAAOC,EARJ,SAA8BF,EAAGC,GACpC,MAAMuB,EAAMb,KAAKa,IAAIxB,EAAEI,YAAaH,EAAEG,aACtC,OAAW,GAAPoB,EACO,EACIxB,EAAEM,iBAAiBL,GAAG,GACrBuB,CACpB,CAEqCC,CAAqBzB,EAAGC,GAC7D,CAQO,SAASyB,EAAsB1B,EAAGC,GACrC,OAAOC,EARJ,SAAiCF,EAAGC,GACvC,MAAM0B,EAAMhB,KAAKgB,IAAI3B,EAAEI,YAAaH,EAAEG,aACtC,OAAW,GAAPuB,EACO,EACI3B,EAAEM,iBAAiBL,GAAG,GACrB0B,CACpB,CAEqCC,CAAwB5B,EAAGC,GAChE,CAOO,SAAS4B,EAAe7B,EAAGC,GAC9B,OAAOC,EAPJ,SAA0BF,EAAGC,GAChC,OAAgB,GAAZD,EAAE8B,OACK,EACI9B,EAAEM,iBAAiBL,GAAG,GACrBD,EAAE8B,MACtB,CAEqCC,CAAiB/B,EAAGC,GACzD,CAWO,SAAS+B,EAAsBhC,EAAGC,GACrC,OAAOC,EAXJ,SAAiCF,EAAGC,GACvC,MAAMI,EAASL,EAAEM,iBAAiBL,GAAG,GAC/BE,EAAQH,EAAEiC,WAAU,GAAQhC,EAAEgC,WAAU,GACxCC,EAAMlC,EAAE8B,OACRK,EAAOD,EAAM/B,EAAQE,EAC3B,OAAKA,GAAU6B,GAASC,GAAQD,EACrB,EAEA7B,EAASF,EAAQgC,GAAQ,EAAID,EAAM/B,EAClD,CAEqCiC,CAAwBpC,EAAGC,GAChE,CAIO,SAASC,EAA0BmC,GACtC,OAAO,EAAIA,EAAa,CAC5B,CACO,SAASC,EAAgBtC,EAAGC,GAC/B,OAAOU,KAAK4B,IAAIvC,EAAIC,EACxB,CAhKK,KAAqBuC,SACrB,KAAqBC,KACrB,KAAqBC,WACrB,KAAqBC,cACrB,KAAqBC,OACrB,KAAqBC,WACrB,KAAqBC,aACrB,KAAqBC,cACrB,KAAqBC,OACrB,KAAqBC,MACrB,KAAqBC,QACrB,KAAqBC,UAGrB,KAAqBX,SACrB,KAAqBC,KACrB,KAAqBC,WACrB,KAAqBC,cACrB,KAAqBC,OACrB,KAAqBC,WACrB,KAAqBC,aACrB,KAAqBC,cACrB,KAAqBC,OACrB,KAAqBC,MACrB,KAAqBC,QACrB,KAAqBC,UAGtB,KAAqBX,SACrB,KAAqBC,KACrB,KAAqBG,OAGrB,KAAqBJ,SACrB,KAAqBE,WACrB,KAAqBE,OACrB,KAAqBK,K,wGC9BdG,E,6BACX,SAAWA,GACPA,EAAkC,QAAI,UACtCA,EAAsC,YAAI,cAC1CA,EAA4C,kBAAI,mBACnD,CAJD,CAIGA,IAA6BA,EAA2B,CAAC,IAErD,MAAMC,EAAsB,CAC/B,CAACD,EAAyBE,SAAU,IACpC,CAACF,EAAyBG,aAAc,IACxC,CAACH,EAAyBI,mBAAoB,EAAAC,E,mCCX3C,MAAMC,UAAeC,c,eCJ5BC,EAAQ,QAA6B,EAmFrCA,EAAQ,GAhBR,SAAqBC,EAAMC,EAAMC,GAE7B,IAAIC,EA9DR,SAAcH,EAAMC,EAAMC,GAEtB,GAAoB,IAAhBF,EAAK/B,QAAgC,IAAhBgC,EAAKhC,OAC1B,OAAO,EAQX,GALIiC,IAAYA,EAAQE,gBACpBJ,EAAOA,EAAKK,cACZJ,EAAOA,EAAKI,eAGZL,IAASC,EACT,OAAO,EAYX,IATA,IAAIK,EAAI,EAEJC,EAAOP,EAAK/B,OACZuC,EAAOP,EAAKhC,OAEZwC,EAAS3D,KAAK4D,MAAM5D,KAAKgB,IAAIyC,EAAMC,GAAQ,GAAK,EAEhDG,EAAW,IAAIC,MAAML,GACrBM,EAAW,IAAID,MAAMJ,GAChBM,EAAI,EAAGA,EAAIP,EAAMO,IACtB,IAAK,IAAIC,EAAIjE,KAAKgB,IAAI,EAAGgD,EAAIL,GAASM,GAAKjE,KAAKa,IAAI6C,EAAMM,EAAIL,EAAS,GAAIM,IACvE,IAAKJ,EAASG,KAAOD,EAASE,IAAMf,EAAKc,KAAOb,EAAKc,GAAI,GACnDT,EACFK,EAASG,GAAKD,EAASE,IAAK,EAC5B,KACJ,CAIR,GAAU,IAANT,EACA,OAAO,EAGX,IAAIU,EAAI,EACJC,EAAQ,EACZ,IAASH,EAAI,EAAGA,EAAIP,EAAMO,IACtB,GAAIH,EAASG,GAAI,CACb,MAAQD,EAASI,IACbA,IAEAjB,EAAKkB,OAAOJ,KAAOb,EAAKiB,OAAOD,MAC/BD,GAER,CAGJ,OAAQV,EAAIC,EAAOD,EAAIE,GAAQF,GAD/BU,GAAK,IACmCV,GAAK,CACjD,CAUmBa,CAAKnB,EAAMC,EAAMC,GAE5BkB,EAAS,EACb,GAAIjB,EAAW,GAAK,CAGhB,IAFA,IAAIkB,EAAWvE,KAAKa,IAAIqC,EAAK/B,OAAQgC,EAAKhC,QACtC6C,EAAI,EACDd,EAAKc,KAAOb,EAAKa,IAAMA,EAAI,GAAKA,EAAIO,KACrCD,EACFN,IAEJX,GAAY,GAAMiB,GAAU,EAAIjB,EACpC,CACA,OAAOA,CACX,C","sources":["webpack://bio/./node_modules/@datagrok-libraries/ml/src/distance-metrics-methods.js","webpack://bio/./node_modules/@datagrok-libraries/ml/src/macromolecule-distance-functions/macromolecule-distance-functions.js","webpack://bio/./node_modules/@datagrok-libraries/utils/src/type-declarations.js","webpack://bio/./node_modules/jaro-winkler-typescript/lib/index.js"],"sourcesContent":["import { BitArrayMetricsNames } from './typed-metrics/consts';\nexport const similarityMetric = {\n    [BitArrayMetricsNames.Tanimoto]: tanimotoSimilarity,\n    [BitArrayMetricsNames.Dice]: diceSimilarity,\n    [BitArrayMetricsNames.Asymmetric]: asymmetricSimilarity,\n    [BitArrayMetricsNames.BraunBlanquet]: braunBlanquetSimilarity,\n    [BitArrayMetricsNames.Cosine]: cosineSimilarity,\n    [BitArrayMetricsNames.Kulczynski]: kulczynskiSimilarity,\n    [BitArrayMetricsNames.McConnaughey]: mcConnaugheySimilarity,\n    [BitArrayMetricsNames.RogotGoldberg]: rogotGoldbergSimilarity,\n    [BitArrayMetricsNames.Russel]: russelSimilarity,\n    [BitArrayMetricsNames.Sokal]: sokalSimilarity,\n    [BitArrayMetricsNames.Hamming]: hammingSimilarity,\n    [BitArrayMetricsNames.Euclidean]: euclideanSimilarity,\n};\nexport const distanceMetrics = {\n    [BitArrayMetricsNames.Tanimoto]: tanimotoDistance,\n    [BitArrayMetricsNames.Dice]: diceDistance,\n    [BitArrayMetricsNames.Asymmetric]: asymmetricDistance,\n    [BitArrayMetricsNames.BraunBlanquet]: braunBlanquetDistance,\n    [BitArrayMetricsNames.Cosine]: cosineDistance,\n    [BitArrayMetricsNames.Kulczynski]: kulczynskiDistance,\n    [BitArrayMetricsNames.McConnaughey]: mcConnaugheyDistance,\n    [BitArrayMetricsNames.RogotGoldberg]: rogotGoldbergDistance,\n    [BitArrayMetricsNames.Russel]: russelDistance,\n    [BitArrayMetricsNames.Sokal]: sokalDistance,\n    [BitArrayMetricsNames.Hamming]: hammingDistance,\n    [BitArrayMetricsNames.Euclidean]: euclideanDistance,\n};\nexport const CHEM_SIMILARITY_METRICS = [\n    BitArrayMetricsNames.Tanimoto,\n    BitArrayMetricsNames.Dice,\n    BitArrayMetricsNames.Cosine\n];\nexport const SEQ_SPACE_SIMILARITY_METRICS = [\n    BitArrayMetricsNames.Tanimoto,\n    BitArrayMetricsNames.Asymmetric,\n    BitArrayMetricsNames.Cosine,\n    BitArrayMetricsNames.Sokal\n];\nexport function tanimotoSimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    if (total == 0)\n        return 1.0;\n    const common = x.andWithCountBits(y, true);\n    return common / (total - common);\n}\nexport function tanimotoDistance(x, y) {\n    return getDistanceFromSimilarity(tanimotoSimilarity(x, y));\n}\nexport function diceSimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    if (total == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return 2 * common / total;\n}\nexport function diceDistance(x, y) {\n    return getDistanceFromSimilarity(diceSimilarity(x, y));\n}\nexport function cosineSimilarity(x, y) {\n    const total = x.trueCount() * y.trueCount();\n    if (total == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return common / Math.sqrt(total);\n}\nexport function cosineDistance(x, y) {\n    return getDistanceFromSimilarity(cosineSimilarity(x, y));\n}\nexport function euclideanSimilarity(x, y) {\n    return getSimilarityFromDistance(euclideanDistance(x, y));\n}\nexport function euclideanDistance(x, y) {\n    return Math.sqrt(x.trueCount() + y.trueCount() - 2 * x.andWithCountBits(y, true));\n}\nexport function hammingSimilarity(x, y) {\n    return getSimilarityFromDistance(hammingDistance(x, y));\n}\nexport function hammingDistance(x, y) {\n    return x.trueCount() + y.trueCount() - 2 * x.andWithCountBits(y, true);\n}\nexport function sokalSimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    const common = x.andWithCountBits(y, true);\n    return common / (2 * total - 3 * common);\n}\nexport function sokalDistance(x, y) {\n    return getDistanceFromSimilarity(sokalSimilarity(x, y));\n}\nexport function kulczynskiSimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    const totalProd = x.trueCount() * y.trueCount();\n    if (totalProd == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return (common * total) / (2 * totalProd);\n}\nexport function kulczynskiDistance(x, y) {\n    return getDistanceFromSimilarity(kulczynskiSimilarity(x, y));\n}\nexport function mcConnaugheySimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    const totalProd = x.trueCount() * y.trueCount();\n    if (totalProd == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return (common * total - totalProd) / totalProd;\n}\nexport function mcConnaugheyDistance(x, y) {\n    return getDistanceFromSimilarity(mcConnaugheySimilarity(x, y));\n}\nexport function asymmetricSimilarity(x, y) {\n    const min = Math.min(x.trueCount(), y.trueCount());\n    if (min == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return common / min;\n}\nexport function asymmetricDistance(x, y) {\n    return getDistanceFromSimilarity(asymmetricSimilarity(x, y));\n}\nexport function braunBlanquetSimilarity(x, y) {\n    const max = Math.max(x.trueCount(), y.trueCount());\n    if (max == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return common / max;\n}\nexport function braunBlanquetDistance(x, y) {\n    return getDistanceFromSimilarity(braunBlanquetSimilarity(x, y));\n}\nexport function russelSimilarity(x, y) {\n    if (x.length == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return common / x.length;\n}\nexport function russelDistance(x, y) {\n    return getDistanceFromSimilarity(russelSimilarity(x, y));\n}\nexport function rogotGoldbergSimilarity(x, y) {\n    const common = x.andWithCountBits(y, true);\n    const total = x.countBits(true) + y.countBits(true);\n    const len = x.length;\n    const diff = len - total + common;\n    if ((common == len) || (diff == len))\n        return 1.0;\n    else\n        return common / total + diff / (2 * len - total);\n}\nexport function rogotGoldbergDistance(x, y) {\n    return getDistanceFromSimilarity(rogotGoldbergSimilarity(x, y));\n}\nexport function getSimilarityFromDistance(distance) {\n    return 1 / (1 + distance);\n}\nexport function getDistanceFromSimilarity(similarity) {\n    return 1 / similarity - 1;\n}\nexport function numericDistance(x, y) {\n    return Math.abs(x - y);\n}\n//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"distance-metrics-methods.js","sourceRoot":"","sources":["distance-metrics-methods.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAE5D,MAAM,CAAC,MAAM,gBAAgB,GAA6D;IACxF,CAAC,oBAAoB,CAAC,QAAQ,CAAC,EAAE,kBAAkB;IACnD,CAAC,oBAAoB,CAAC,IAAI,CAAC,EAAE,cAAc;IAC3C,CAAC,oBAAoB,CAAC,UAAU,CAAC,EAAE,oBAAoB;IACvD,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,uBAAuB;IAC7D,CAAC,oBAAoB,CAAC,MAAM,CAAC,EAAE,gBAAgB;IAC/C,CAAC,oBAAoB,CAAC,UAAU,CAAC,EAAE,oBAAoB;IACvD,CAAC,oBAAoB,CAAC,YAAY,CAAC,EAAE,sBAAsB;IAC3D,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,uBAAuB;IAC7D,CAAC,oBAAoB,CAAC,MAAM,CAAC,EAAE,gBAAgB;IAC/C,CAAC,oBAAoB,CAAC,KAAK,CAAC,EAAE,eAAe;IAC7C,CAAC,oBAAoB,CAAC,OAAO,CAAC,EAAE,iBAAiB;IACjD,CAAC,oBAAoB,CAAC,SAAS,CAAC,EAAE,mBAAmB;CACtD,CAAC;AAEF,MAAM,CAAC,MAAM,eAAe,GAA6D;IACvF,CAAC,oBAAoB,CAAC,QAAQ,CAAC,EAAE,gBAAgB;IACjD,CAAC,oBAAoB,CAAC,IAAI,CAAC,EAAE,YAAY;IACzC,CAAC,oBAAoB,CAAC,UAAU,CAAC,EAAE,kBAAkB;IACrD,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,qBAAqB;IAC3D,CAAC,oBAAoB,CAAC,MAAM,CAAC,EAAE,cAAc;IAC7C,CAAC,oBAAoB,CAAC,UAAU,CAAC,EAAE,kBAAkB;IACrD,CAAC,oBAAoB,CAAC,YAAY,CAAC,EAAE,oBAAoB;IACzD,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,qBAAqB;IAC3D,CAAC,oBAAoB,CAAC,MAAM,CAAC,EAAE,cAAc;IAC7C,CAAC,oBAAoB,CAAC,KAAK,CAAC,EAAE,aAAa;IAC3C,CAAC,oBAAoB,CAAC,OAAO,CAAC,EAAE,eAAe;IAC/C,CAAC,oBAAoB,CAAC,SAAS,CAAC,EAAE,iBAAiB;CACpD,CAAC;AAEF,MAAM,CAAC,MAAM,uBAAuB,GAAG;IACrC,oBAAoB,CAAC,QAAQ;IAC7B,oBAAoB,CAAC,IAAI;IACzB,oBAAoB,CAAC,MAAM;CAAC,CAAC;AAC/B,MAAM,CAAC,MAAM,4BAA4B,GAAG;IAC1C,oBAAoB,CAAC,QAAQ;IAC7B,oBAAoB,CAAC,UAAU;IAC/B,oBAAoB,CAAC,MAAM;IAC3B,oBAAoB,CAAC,KAAK;CAAC,CAAC;AAE9B,MAAM,UAAU,kBAAkB,CAAC,CAAW,EAAE,CAAW;IACzD,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,IAAI,KAAK,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC3B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,CAAC,KAAK,GAAG,MAAM,CAAC,CAAC;AACnC,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,CAAW,EAAE,CAAW;IACvD,OAAO,yBAAyB,CAAC,kBAAkB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC7D,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,CAAW,EAAE,CAAW;IACrD,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,IAAI,KAAK,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC3B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,CAAC,GAAG,MAAM,GAAG,KAAK,CAAC;AAC5B,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,CAAW,EAAE,CAAW;IACnD,OAAO,yBAAyB,CAAC,cAAc,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AACzD,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,CAAW,EAAE,CAAW;IACvD,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,IAAI,KAAK,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC3B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AACnC,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,CAAW,EAAE,CAAW;IACrD,OAAO,yBAAyB,CAAC,gBAAgB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC3D,CAAC;AAED,MAAM,UAAU,mBAAmB,CAAC,CAAW,EAAE,CAAW;IAC1D,OAAO,yBAAyB,CAAC,iBAAiB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC5D,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,CAAW,EAAE,CAAW;IACxD,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC;AACpF,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,CAAW,EAAE,CAAW;IACxD,OAAO,yBAAyB,CAAC,eAAe,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC1D,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,CAAW,EAAE,CAAW;IACtD,OAAO,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;AACzE,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,CAAW,EAAE,CAAW;IACtD,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,GAAG,MAAM,CAAC,CAAC;AAC3C,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,CAAW,EAAE,CAAW;IACpD,OAAO,yBAAyB,CAAC,eAAe,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC1D,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,CAAW,EAAE,CAAW;IAC3D,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,MAAM,SAAS,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAChD,IAAI,SAAS,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC/B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,CAAC,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,SAAS,CAAC,CAAC;AAC5C,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,CAAW,EAAE,CAAW;IACzD,OAAO,yBAAyB,CAAC,oBAAoB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC/D,CAAC;AAED,MAAM,UAAU,sBAAsB,CAAC,CAAW,EAAE,CAAW;IAC7D,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,MAAM,SAAS,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAChD,IAAI,SAAS,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC/B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,CAAC,MAAM,GAAG,KAAK,GAAG,SAAS,CAAC,GAAG,SAAS,CAAC;AAClD,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,CAAW,EAAE,CAAW;IAC3D,OAAO,yBAAyB,CAAC,sBAAsB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AACjE,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,CAAW,EAAE,CAAW;IAC3D,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC;IACnD,IAAI,GAAG,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IACzB,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,GAAG,CAAC;AACtB,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,CAAW,EAAE,CAAW;IACzD,OAAO,yBAAyB,CAAC,oBAAoB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC/D,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,CAAW,EAAE,CAAW;IAC9D,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC;IACnD,IAAI,GAAG,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IACzB,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,GAAG,CAAC;AACtB,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,CAAW,EAAE,CAAW;IAC5D,OAAO,yBAAyB,CAAC,uBAAuB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAClE,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,CAAW,EAAE,CAAW;IACvD,IAAI,CAAC,CAAC,MAAM,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC9B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,CAAC,CAAC,MAAM,CAAC;AAC3B,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,CAAW,EAAE,CAAW;IACrD,OAAO,yBAAyB,CAAC,gBAAgB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC3D,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,CAAW,EAAE,CAAW;IAC9D,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;IACpD,MAAM,GAAG,GAAG,CAAC,CAAC,MAAM,CAAC;IACrB,MAAM,IAAI,GAAG,GAAG,GAAG,KAAK,GAAG,MAAM,CAAC;IAClC,IAAI,CAAC,MAAM,IAAI,GAAG,CAAC,IAAI,CAAC,IAAI,IAAI,GAAG,CAAC;QAAE,OAAO,GAAG,CAAC;;QAC5C,OAAO,MAAM,GAAG,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,GAAG,GAAG,KAAK,CAAC,CAAC;AACxD,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,CAAW,EAAE,CAAW;IAC5D,OAAO,yBAAyB,CAAC,uBAAuB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAClE,CAAC;AAED,MAAM,UAAU,yBAAyB,CAAC,QAAgB;IACxD,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAC;AAC5B,CAAC;AAED,MAAM,UAAU,yBAAyB,CAAC,UAAkB;IAC1D,OAAO,CAAC,GAAG,UAAU,GAAG,CAAC,CAAC;AAC5B,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,CAAS,EAAE,CAAS;IAClD,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;AACzB,CAAC","sourcesContent":["import BitArray from '@datagrok-libraries/utils/src/bit-array';\nimport {BitArrayMetricsNames} from './typed-metrics/consts';\n\nexport const similarityMetric: { [name: string]: (x: BitArray, y: BitArray) => number } = {\n  [BitArrayMetricsNames.Tanimoto]: tanimotoSimilarity,\n  [BitArrayMetricsNames.Dice]: diceSimilarity,\n  [BitArrayMetricsNames.Asymmetric]: asymmetricSimilarity,\n  [BitArrayMetricsNames.BraunBlanquet]: braunBlanquetSimilarity,\n  [BitArrayMetricsNames.Cosine]: cosineSimilarity,\n  [BitArrayMetricsNames.Kulczynski]: kulczynskiSimilarity,\n  [BitArrayMetricsNames.McConnaughey]: mcConnaugheySimilarity,\n  [BitArrayMetricsNames.RogotGoldberg]: rogotGoldbergSimilarity,\n  [BitArrayMetricsNames.Russel]: russelSimilarity,\n  [BitArrayMetricsNames.Sokal]: sokalSimilarity,\n  [BitArrayMetricsNames.Hamming]: hammingSimilarity,\n  [BitArrayMetricsNames.Euclidean]: euclideanSimilarity,\n};\n\nexport const distanceMetrics: { [name: string]: (x: BitArray, y: BitArray) => number } = {\n  [BitArrayMetricsNames.Tanimoto]: tanimotoDistance,\n  [BitArrayMetricsNames.Dice]: diceDistance,\n  [BitArrayMetricsNames.Asymmetric]: asymmetricDistance,\n  [BitArrayMetricsNames.BraunBlanquet]: braunBlanquetDistance,\n  [BitArrayMetricsNames.Cosine]: cosineDistance,\n  [BitArrayMetricsNames.Kulczynski]: kulczynskiDistance,\n  [BitArrayMetricsNames.McConnaughey]: mcConnaugheyDistance,\n  [BitArrayMetricsNames.RogotGoldberg]: rogotGoldbergDistance,\n  [BitArrayMetricsNames.Russel]: russelDistance,\n  [BitArrayMetricsNames.Sokal]: sokalDistance,\n  [BitArrayMetricsNames.Hamming]: hammingDistance,\n  [BitArrayMetricsNames.Euclidean]: euclideanDistance,\n};\n\nexport const CHEM_SIMILARITY_METRICS = [\n  BitArrayMetricsNames.Tanimoto,\n  BitArrayMetricsNames.Dice,\n  BitArrayMetricsNames.Cosine];\nexport const SEQ_SPACE_SIMILARITY_METRICS = [\n  BitArrayMetricsNames.Tanimoto,\n  BitArrayMetricsNames.Asymmetric,\n  BitArrayMetricsNames.Cosine,\n  BitArrayMetricsNames.Sokal];\n\nexport function tanimotoSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  if (total == 0) return 1.0;\n  const common = x.andWithCountBits(y, true);\n  return common / (total - common);\n}\n\nexport function tanimotoDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(tanimotoSimilarity(x, y));\n}\n\nexport function diceSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  if (total == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return 2 * common / total;\n}\n\nexport function diceDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(diceSimilarity(x, y));\n}\n\nexport function cosineSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() * y.trueCount();\n  if (total == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return common / Math.sqrt(total);\n}\n\nexport function cosineDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(cosineSimilarity(x, y));\n}\n\nexport function euclideanSimilarity(x: BitArray, y: BitArray): number {\n  return getSimilarityFromDistance(euclideanDistance(x, y));\n}\n\nexport function euclideanDistance(x: BitArray, y: BitArray): number {\n  return Math.sqrt(x.trueCount() + y.trueCount() - 2 * x.andWithCountBits(y, true));\n}\n\nexport function hammingSimilarity(x: BitArray, y: BitArray): number {\n  return getSimilarityFromDistance(hammingDistance(x, y));\n}\n\nexport function hammingDistance(x: BitArray, y: BitArray): number {\n  return x.trueCount() + y.trueCount() - 2 * x.andWithCountBits(y, true);\n}\n\nexport function sokalSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  const common = x.andWithCountBits(y, true);\n  return common / (2 * total - 3 * common);\n}\n\nexport function sokalDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(sokalSimilarity(x, y));\n}\n\nexport function kulczynskiSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  const totalProd = x.trueCount() * y.trueCount();\n  if (totalProd == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return (common * total) / (2 * totalProd);\n}\n\nexport function kulczynskiDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(kulczynskiSimilarity(x, y));\n}\n\nexport function mcConnaugheySimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  const totalProd = x.trueCount() * y.trueCount();\n  if (totalProd == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return (common * total - totalProd) / totalProd;\n}\n\nexport function mcConnaugheyDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(mcConnaugheySimilarity(x, y));\n}\n\nexport function asymmetricSimilarity(x: BitArray, y: BitArray): number {\n  const min = Math.min(x.trueCount(), y.trueCount());\n  if (min == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return common / min;\n}\n\nexport function asymmetricDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(asymmetricSimilarity(x, y));\n}\n\nexport function braunBlanquetSimilarity(x: BitArray, y: BitArray): number {\n  const max = Math.max(x.trueCount(), y.trueCount());\n  if (max == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return common / max;\n}\n\nexport function braunBlanquetDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(braunBlanquetSimilarity(x, y));\n}\n\nexport function russelSimilarity(x: BitArray, y: BitArray): number {\n  if (x.length == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return common / x.length;\n}\n\nexport function russelDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(russelSimilarity(x, y));\n}\n\nexport function rogotGoldbergSimilarity(x: BitArray, y: BitArray): number {\n  const common = x.andWithCountBits(y, true);\n  const total = x.countBits(true) + y.countBits(true);\n  const len = x.length;\n  const diff = len - total + common;\n  if ((common == len) || (diff == len)) return 1.0;\n  else return common / total + diff / (2 * len - total);\n}\n\nexport function rogotGoldbergDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(rogotGoldbergSimilarity(x, y));\n}\n\nexport function getSimilarityFromDistance(distance: number) {\n  return 1 / (1 + distance);\n}\n\nexport function getDistanceFromSimilarity(similarity: number) {\n  return 1 / similarity - 1;\n}\n\nexport function numericDistance(x: number, y: number) {\n  return Math.abs(x - y);\n}\n"]}","import { hamming } from './hamming';\nimport { levenstein } from './levenstein';\nimport { needlemanWunch } from './needleman-wunsch';\n/** Enum containing currently supported macromolecule distance functions\n * Hamming distance will be used if the sequences are already aligned\n * Needleman distance will be used for protein sequences with known BLOSUM62 matrix\n * Levenshtein distance will be used for nucleotide sequences as for them substitution matrix is same as identity matrix\n */\nexport var MmDistanceFunctionsNames;\n(function (MmDistanceFunctionsNames) {\n    MmDistanceFunctionsNames[\"HAMMING\"] = \"Hamming\";\n    MmDistanceFunctionsNames[\"LEVENSHTEIN\"] = \"Levenshtein\";\n    MmDistanceFunctionsNames[\"NEEDLEMANN_WUNSCH\"] = \"Needlemann-Wunsch\";\n})(MmDistanceFunctionsNames || (MmDistanceFunctionsNames = {}));\n;\nexport const mmDistanceFunctions = {\n    [MmDistanceFunctionsNames.HAMMING]: hamming,\n    [MmDistanceFunctionsNames.LEVENSHTEIN]: levenstein,\n    [MmDistanceFunctionsNames.NEEDLEMANN_WUNSCH]: needlemanWunch\n};\n//# sourceMappingURL=data:application/json;base64,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","/**\n * Denotes a vector of floating poit values.\n *\n * @export\n * @class Vector\n * @extends {Float32Array}\n */\nexport class Vector extends Float32Array {\n}\n/**\n * Denotes a two-dimensional matrix.\n *\n * @export\n * @class Matrix\n * @extends {Array<Vector>}\n */\nexport class Matrix extends Array {\n}\n/**\n * Denotes cartesian coordinates.\n *\n * @export\n * @class Coordinates\n * @extends {Matrix}\n */\nexport class Coordinates extends Matrix {\n}\n/**\n * Denotes an array of arbitrary-typed vectors.\n *\n * @export\n * @class Vectors\n * @extends {Array<any>}\n */\nexport class Vectors extends Array {\n}\n//# sourceMappingURL=data:application/json;base64,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","\"use strict\";\n// Reference: https://www.geeksforgeeks.org/jaro-and-jaro-winkler-similarity/\nObject.defineProperty(exports, \"__esModule\", { value: true });\nexports.jaroWinkler = exports.jaro = void 0;\n/**\n *\n * @param str1 String 1 for compare\n * @param str2 String 2 for compare\n * @param options to control case sensitive or not\n */\nfunction jaro(str1, str2, options) {\n    // Exit early if either are empty.\n    if (str1.length === 0 || str2.length === 0) {\n        return 0;\n    }\n    // Convert to upper if case-sensitive is false.\n    if (options && !options.caseSensitive) {\n        str1 = str1.toUpperCase();\n        str2 = str2.toUpperCase();\n    }\n    // Exact match\n    if (str1 === str2) {\n        return 1;\n    }\n    // Number of matches\n    var m = 0;\n    // Length of two Strings\n    var len1 = str1.length;\n    var len2 = str2.length;\n    // Maximum distance\n    var window = Math.floor(Math.max(len1, len2) / 2) - 1;\n    // Hash for matches\n    var str1Hash = new Array(len1);\n    var str2Hash = new Array(len2);\n    for (var i = 0; i < len1; i++) {\n        for (var j = Math.max(0, i - window); j <= Math.min(len2, i + window + 1); j++) {\n            if (!str1Hash[i] && !str2Hash[j] && str1[i] === str2[j]) {\n                ++m;\n                str1Hash[i] = str2Hash[j] = true;\n                break;\n            }\n        }\n    }\n    // Exit early if no matches were found.\n    if (m === 0) {\n        return 0;\n    }\n    // Count the transpositions.\n    var t = 0;\n    var point = 0;\n    for (var i = 0; i < len1; i++) {\n        if (str1Hash[i]) {\n            while (!str2Hash[point]) {\n                point++;\n            }\n            if (str1.charAt(i) !== str2.charAt(point++)) {\n                t++;\n            }\n        }\n    }\n    t /= 2;\n    return (m / len1 + m / len2 + (m - t) / m) / 3;\n}\nexports.jaro = jaro;\n/**\n *\n * @param str1 String 1 for compare\n * @param str2 String 2 for compare\n * @param options to control case sensitive or not\n */\nfunction jaroWinkler(str1, str2, options) {\n    // Jaro Distance\n    var jaroDist = jaro(str1, str2, options);\n    // Same prefix length, maxium is 4\n    var prefix = 0;\n    if (jaroDist > 0.7) {\n        var minIndex = Math.min(str1.length, str2.length);\n        var i = 0;\n        while (str1[i] === str2[i] && i < 4 && i < minIndex) {\n            ++prefix;\n            i++;\n        }\n        jaroDist += 0.1 * prefix * (1 - jaroDist);\n    }\n    return jaroDist;\n}\nexports.jaroWinkler = jaroWinkler;\n"],"names":["tanimotoDistance","x","y","getDistanceFromSimilarity","total","trueCount","common","andWithCountBits","tanimotoSimilarity","diceDistance","diceSimilarity","cosineDistance","Math","sqrt","cosineSimilarity","euclideanDistance","hammingDistance","sokalDistance","sokalSimilarity","kulczynskiDistance","totalProd","kulczynskiSimilarity","mcConnaugheyDistance","mcConnaugheySimilarity","asymmetricDistance","min","asymmetricSimilarity","braunBlanquetDistance","max","braunBlanquetSimilarity","russelDistance","length","russelSimilarity","rogotGoldbergDistance","countBits","len","diff","rogotGoldbergSimilarity","similarity","numericDistance","abs","Tanimoto","Dice","Asymmetric","BraunBlanquet","Cosine","Kulczynski","McConnaughey","RogotGoldberg","Russel","Sokal","Hamming","Euclidean","MmDistanceFunctionsNames","mmDistanceFunctions","HAMMING","LEVENSHTEIN","NEEDLEMANN_WUNSCH","n","Vector","Float32Array","exports","str1","str2","options","jaroDist","caseSensitive","toUpperCase","m","len1","len2","window","floor","str1Hash","Array","str2Hash","i","j","t","point","charAt","jaro","prefix","minIndex"],"sourceRoot":""}
+{"version":3,"file":"452.js","mappings":"oOA+CO,SAASA,EAAiBC,EAAGC,GAChC,OAAOC,EARJ,SAA4BF,EAAGC,GAClC,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAChC,GAAa,GAATD,EACA,OAAO,EACX,MAAME,EAASL,EAAEM,iBAAiBL,GAAG,GACrC,OAAOI,GAAUF,EAAQE,EAC7B,CAEqCE,CAAmBP,EAAGC,GAC3D,CAQO,SAASO,EAAaR,EAAGC,GAC5B,OAAOC,EARJ,SAAwBF,EAAGC,GAC9B,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAChC,OAAa,GAATD,EACO,EAEJ,EADQH,EAAEM,iBAAiBL,GAAG,GACjBE,CACxB,CAEqCM,CAAeT,EAAGC,GACvD,CAQO,SAASS,EAAeV,EAAGC,GAC9B,OAAOC,EARJ,SAA0BF,EAAGC,GAChC,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAChC,OAAa,GAATD,EACO,EACIH,EAAEM,iBAAiBL,GAAG,GACrBU,KAAKC,KAAKT,EAC9B,CAEqCU,CAAiBb,EAAGC,GACzD,CAIO,SAASa,EAAkBd,EAAGC,GACjC,OAAOU,KAAKC,KAAKZ,EAAEI,YAAcH,EAAEG,YAAc,EAAIJ,EAAEM,iBAAiBL,GAAG,GAC/E,CAIO,SAASc,EAAgBf,EAAGC,GAC/B,OAAOD,EAAEI,YAAcH,EAAEG,YAAc,EAAIJ,EAAEM,iBAAiBL,GAAG,EACrE,CAMO,SAASe,EAAchB,EAAGC,GAC7B,OAAOC,EANJ,SAAyBF,EAAGC,GAC/B,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAC1BC,EAASL,EAAEM,iBAAiBL,GAAG,GACrC,OAAOI,GAAU,EAAIF,EAAQ,EAAIE,EACrC,CAEqCY,CAAgBjB,EAAGC,GACxD,CASO,SAASiB,EAAmBlB,EAAGC,GAClC,OAAOC,EATJ,SAA8BF,EAAGC,GACpC,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAC1Be,EAAYnB,EAAEI,YAAcH,EAAEG,YACpC,OAAiB,GAAbe,EACO,EACInB,EAAEM,iBAAiBL,GAAG,GACpBE,GAAU,EAAIgB,EACnC,CAEqCC,CAAqBpB,EAAGC,GAC7D,CASO,SAASoB,EAAqBrB,EAAGC,GACpC,OAAOC,EATJ,SAAgCF,EAAGC,GACtC,MAAME,EAAQH,EAAEI,YAAcH,EAAEG,YAC1Be,EAAYnB,EAAEI,YAAcH,EAAEG,YACpC,OAAiB,GAAbe,EACO,GACInB,EAAEM,iBAAiBL,GAAG,GACpBE,EAAQgB,GAAaA,CAC1C,CAEqCG,CAAuBtB,EAAGC,GAC/D,CAQO,SAASsB,EAAmBvB,EAAGC,GAClC,OAAOC,EARJ,SAA8BF,EAAGC,GACpC,MAAMuB,EAAMb,KAAKa,IAAIxB,EAAEI,YAAaH,EAAEG,aACtC,OAAW,GAAPoB,EACO,EACIxB,EAAEM,iBAAiBL,GAAG,GACrBuB,CACpB,CAEqCC,CAAqBzB,EAAGC,GAC7D,CAQO,SAASyB,EAAsB1B,EAAGC,GACrC,OAAOC,EARJ,SAAiCF,EAAGC,GACvC,MAAM0B,EAAMhB,KAAKgB,IAAI3B,EAAEI,YAAaH,EAAEG,aACtC,OAAW,GAAPuB,EACO,EACI3B,EAAEM,iBAAiBL,GAAG,GACrB0B,CACpB,CAEqCC,CAAwB5B,EAAGC,GAChE,CAOO,SAAS4B,EAAe7B,EAAGC,GAC9B,OAAOC,EAPJ,SAA0BF,EAAGC,GAChC,OAAgB,GAAZD,EAAE8B,OACK,EACI9B,EAAEM,iBAAiBL,GAAG,GACrBD,EAAE8B,MACtB,CAEqCC,CAAiB/B,EAAGC,GACzD,CAWO,SAAS+B,EAAsBhC,EAAGC,GACrC,OAAOC,EAXJ,SAAiCF,EAAGC,GACvC,MAAMI,EAASL,EAAEM,iBAAiBL,GAAG,GAC/BE,EAAQH,EAAEiC,WAAU,GAAQhC,EAAEgC,WAAU,GACxCC,EAAMlC,EAAE8B,OACRK,EAAOD,EAAM/B,EAAQE,EAC3B,OAAKA,GAAU6B,GAASC,GAAQD,EACrB,EAEA7B,EAASF,EAAQgC,GAAQ,EAAID,EAAM/B,EAClD,CAEqCiC,CAAwBpC,EAAGC,GAChE,CAIO,SAASC,EAA0BmC,GACtC,OAAsB,IAAfA,EAAmB,WAAgB,EAAIA,EAAc,CAChE,CACO,SAASC,EAAgBtC,EAAGC,GAC/B,OAAOU,KAAK4B,IAAIvC,EAAIC,EACxB,CAhKK,KAAqBuC,SACrB,KAAqBC,KACrB,KAAqBC,WACrB,KAAqBC,cACrB,KAAqBC,OACrB,KAAqBC,WACrB,KAAqBC,aACrB,KAAqBC,cACrB,KAAqBC,OACrB,KAAqBC,MACrB,KAAqBC,QACrB,KAAqBC,UAGrB,KAAqBX,SACrB,KAAqBC,KACrB,KAAqBC,WACrB,KAAqBC,cACrB,KAAqBC,OACrB,KAAqBC,WACrB,KAAqBC,aACrB,KAAqBC,cACrB,KAAqBC,OACrB,KAAqBC,MACrB,KAAqBC,QACrB,KAAqBC,UAGtB,KAAqBX,SACrB,KAAqBC,KACrB,KAAqBG,OAGrB,KAAqBJ,SACrB,KAAqBE,WACrB,KAAqBE,OACrB,KAAqBK,K,wGC9BdG,E,6BACX,SAAWA,GACPA,EAAkC,QAAI,UACtCA,EAAsC,YAAI,cAC1CA,EAA4C,kBAAI,mBACnD,CAJD,CAIGA,IAA6BA,EAA2B,CAAC,IAErD,MAAMC,EAAsB,CAC/B,CAACD,EAAyBE,SAAU,IACpC,CAACF,EAAyBG,aAAc,IACxC,CAACH,EAAyBI,mBAAoB,EAAAC,E,mCCX3C,MAAMC,UAAeC,c,eCJ5BC,EAAQ,QAA6B,EAmFrCA,EAAQ,GAhBR,SAAqBC,EAAMC,EAAMC,GAE7B,IAAIC,EA9DR,SAAcH,EAAMC,EAAMC,GAEtB,GAAoB,IAAhBF,EAAK/B,QAAgC,IAAhBgC,EAAKhC,OAC1B,OAAO,EAQX,GALIiC,IAAYA,EAAQE,gBACpBJ,EAAOA,EAAKK,cACZJ,EAAOA,EAAKI,eAGZL,IAASC,EACT,OAAO,EAYX,IATA,IAAIK,EAAI,EAEJC,EAAOP,EAAK/B,OACZuC,EAAOP,EAAKhC,OAEZwC,EAAS3D,KAAK4D,MAAM5D,KAAKgB,IAAIyC,EAAMC,GAAQ,GAAK,EAEhDG,EAAW,IAAIC,MAAML,GACrBM,EAAW,IAAID,MAAMJ,GAChBM,EAAI,EAAGA,EAAIP,EAAMO,IACtB,IAAK,IAAIC,EAAIjE,KAAKgB,IAAI,EAAGgD,EAAIL,GAASM,GAAKjE,KAAKa,IAAI6C,EAAMM,EAAIL,EAAS,GAAIM,IACvE,IAAKJ,EAASG,KAAOD,EAASE,IAAMf,EAAKc,KAAOb,EAAKc,GAAI,GACnDT,EACFK,EAASG,GAAKD,EAASE,IAAK,EAC5B,KACJ,CAIR,GAAU,IAANT,EACA,OAAO,EAGX,IAAIU,EAAI,EACJC,EAAQ,EACZ,IAASH,EAAI,EAAGA,EAAIP,EAAMO,IACtB,GAAIH,EAASG,GAAI,CACb,MAAQD,EAASI,IACbA,IAEAjB,EAAKkB,OAAOJ,KAAOb,EAAKiB,OAAOD,MAC/BD,GAER,CAGJ,OAAQV,EAAIC,EAAOD,EAAIE,GAAQF,GAD/BU,GAAK,IACmCV,GAAK,CACjD,CAUmBa,CAAKnB,EAAMC,EAAMC,GAE5BkB,EAAS,EACb,GAAIjB,EAAW,GAAK,CAGhB,IAFA,IAAIkB,EAAWvE,KAAKa,IAAIqC,EAAK/B,OAAQgC,EAAKhC,QACtC6C,EAAI,EACDd,EAAKc,KAAOb,EAAKa,IAAMA,EAAI,GAAKA,EAAIO,KACrCD,EACFN,IAEJX,GAAY,GAAMiB,GAAU,EAAIjB,EACpC,CACA,OAAOA,CACX,C","sources":["webpack://bio/./node_modules/@datagrok-libraries/ml/src/distance-metrics-methods.js","webpack://bio/./node_modules/@datagrok-libraries/ml/src/macromolecule-distance-functions/macromolecule-distance-functions.js","webpack://bio/./node_modules/@datagrok-libraries/utils/src/type-declarations.js","webpack://bio/./node_modules/jaro-winkler-typescript/lib/index.js"],"sourcesContent":["import { BitArrayMetricsNames } from './typed-metrics/consts';\nexport const similarityMetric = {\n    [BitArrayMetricsNames.Tanimoto]: tanimotoSimilarity,\n    [BitArrayMetricsNames.Dice]: diceSimilarity,\n    [BitArrayMetricsNames.Asymmetric]: asymmetricSimilarity,\n    [BitArrayMetricsNames.BraunBlanquet]: braunBlanquetSimilarity,\n    [BitArrayMetricsNames.Cosine]: cosineSimilarity,\n    [BitArrayMetricsNames.Kulczynski]: kulczynskiSimilarity,\n    [BitArrayMetricsNames.McConnaughey]: mcConnaugheySimilarity,\n    [BitArrayMetricsNames.RogotGoldberg]: rogotGoldbergSimilarity,\n    [BitArrayMetricsNames.Russel]: russelSimilarity,\n    [BitArrayMetricsNames.Sokal]: sokalSimilarity,\n    [BitArrayMetricsNames.Hamming]: hammingSimilarity,\n    [BitArrayMetricsNames.Euclidean]: euclideanSimilarity,\n};\nexport const distanceMetrics = {\n    [BitArrayMetricsNames.Tanimoto]: tanimotoDistance,\n    [BitArrayMetricsNames.Dice]: diceDistance,\n    [BitArrayMetricsNames.Asymmetric]: asymmetricDistance,\n    [BitArrayMetricsNames.BraunBlanquet]: braunBlanquetDistance,\n    [BitArrayMetricsNames.Cosine]: cosineDistance,\n    [BitArrayMetricsNames.Kulczynski]: kulczynskiDistance,\n    [BitArrayMetricsNames.McConnaughey]: mcConnaugheyDistance,\n    [BitArrayMetricsNames.RogotGoldberg]: rogotGoldbergDistance,\n    [BitArrayMetricsNames.Russel]: russelDistance,\n    [BitArrayMetricsNames.Sokal]: sokalDistance,\n    [BitArrayMetricsNames.Hamming]: hammingDistance,\n    [BitArrayMetricsNames.Euclidean]: euclideanDistance,\n};\nexport const CHEM_SIMILARITY_METRICS = [\n    BitArrayMetricsNames.Tanimoto,\n    BitArrayMetricsNames.Dice,\n    BitArrayMetricsNames.Cosine\n];\nexport const SEQ_SPACE_SIMILARITY_METRICS = [\n    BitArrayMetricsNames.Tanimoto,\n    BitArrayMetricsNames.Asymmetric,\n    BitArrayMetricsNames.Cosine,\n    BitArrayMetricsNames.Sokal\n];\nexport function tanimotoSimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    if (total == 0)\n        return 1.0;\n    const common = x.andWithCountBits(y, true);\n    return common / (total - common);\n}\nexport function tanimotoDistance(x, y) {\n    return getDistanceFromSimilarity(tanimotoSimilarity(x, y));\n}\nexport function diceSimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    if (total == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return 2 * common / total;\n}\nexport function diceDistance(x, y) {\n    return getDistanceFromSimilarity(diceSimilarity(x, y));\n}\nexport function cosineSimilarity(x, y) {\n    const total = x.trueCount() * y.trueCount();\n    if (total == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return common / Math.sqrt(total);\n}\nexport function cosineDistance(x, y) {\n    return getDistanceFromSimilarity(cosineSimilarity(x, y));\n}\nexport function euclideanSimilarity(x, y) {\n    return getSimilarityFromDistance(euclideanDistance(x, y));\n}\nexport function euclideanDistance(x, y) {\n    return Math.sqrt(x.trueCount() + y.trueCount() - 2 * x.andWithCountBits(y, true));\n}\nexport function hammingSimilarity(x, y) {\n    return getSimilarityFromDistance(hammingDistance(x, y));\n}\nexport function hammingDistance(x, y) {\n    return x.trueCount() + y.trueCount() - 2 * x.andWithCountBits(y, true);\n}\nexport function sokalSimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    const common = x.andWithCountBits(y, true);\n    return common / (2 * total - 3 * common);\n}\nexport function sokalDistance(x, y) {\n    return getDistanceFromSimilarity(sokalSimilarity(x, y));\n}\nexport function kulczynskiSimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    const totalProd = x.trueCount() * y.trueCount();\n    if (totalProd == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return (common * total) / (2 * totalProd);\n}\nexport function kulczynskiDistance(x, y) {\n    return getDistanceFromSimilarity(kulczynskiSimilarity(x, y));\n}\nexport function mcConnaugheySimilarity(x, y) {\n    const total = x.trueCount() + y.trueCount();\n    const totalProd = x.trueCount() * y.trueCount();\n    if (totalProd == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return (common * total - totalProd) / totalProd;\n}\nexport function mcConnaugheyDistance(x, y) {\n    return getDistanceFromSimilarity(mcConnaugheySimilarity(x, y));\n}\nexport function asymmetricSimilarity(x, y) {\n    const min = Math.min(x.trueCount(), y.trueCount());\n    if (min == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return common / min;\n}\nexport function asymmetricDistance(x, y) {\n    return getDistanceFromSimilarity(asymmetricSimilarity(x, y));\n}\nexport function braunBlanquetSimilarity(x, y) {\n    const max = Math.max(x.trueCount(), y.trueCount());\n    if (max == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return common / max;\n}\nexport function braunBlanquetDistance(x, y) {\n    return getDistanceFromSimilarity(braunBlanquetSimilarity(x, y));\n}\nexport function russelSimilarity(x, y) {\n    if (x.length == 0)\n        return 0.0;\n    const common = x.andWithCountBits(y, true);\n    return common / x.length;\n}\nexport function russelDistance(x, y) {\n    return getDistanceFromSimilarity(russelSimilarity(x, y));\n}\nexport function rogotGoldbergSimilarity(x, y) {\n    const common = x.andWithCountBits(y, true);\n    const total = x.countBits(true) + y.countBits(true);\n    const len = x.length;\n    const diff = len - total + common;\n    if ((common == len) || (diff == len))\n        return 1.0;\n    else\n        return common / total + diff / (2 * len - total);\n}\nexport function rogotGoldbergDistance(x, y) {\n    return getDistanceFromSimilarity(rogotGoldbergSimilarity(x, y));\n}\nexport function getSimilarityFromDistance(distance) {\n    return 1 / (1 + distance);\n}\nexport function getDistanceFromSimilarity(similarity) {\n    return similarity === 0 ? 3.402823E+38 : (1 / similarity) - 1;\n}\nexport function numericDistance(x, y) {\n    return Math.abs(x - y);\n}\n//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"distance-metrics-methods.js","sourceRoot":"","sources":["distance-metrics-methods.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAE5D,MAAM,CAAC,MAAM,gBAAgB,GAA6D;IACxF,CAAC,oBAAoB,CAAC,QAAQ,CAAC,EAAE,kBAAkB;IACnD,CAAC,oBAAoB,CAAC,IAAI,CAAC,EAAE,cAAc;IAC3C,CAAC,oBAAoB,CAAC,UAAU,CAAC,EAAE,oBAAoB;IACvD,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,uBAAuB;IAC7D,CAAC,oBAAoB,CAAC,MAAM,CAAC,EAAE,gBAAgB;IAC/C,CAAC,oBAAoB,CAAC,UAAU,CAAC,EAAE,oBAAoB;IACvD,CAAC,oBAAoB,CAAC,YAAY,CAAC,EAAE,sBAAsB;IAC3D,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,uBAAuB;IAC7D,CAAC,oBAAoB,CAAC,MAAM,CAAC,EAAE,gBAAgB;IAC/C,CAAC,oBAAoB,CAAC,KAAK,CAAC,EAAE,eAAe;IAC7C,CAAC,oBAAoB,CAAC,OAAO,CAAC,EAAE,iBAAiB;IACjD,CAAC,oBAAoB,CAAC,SAAS,CAAC,EAAE,mBAAmB;CACtD,CAAC;AAEF,MAAM,CAAC,MAAM,eAAe,GAA6D;IACvF,CAAC,oBAAoB,CAAC,QAAQ,CAAC,EAAE,gBAAgB;IACjD,CAAC,oBAAoB,CAAC,IAAI,CAAC,EAAE,YAAY;IACzC,CAAC,oBAAoB,CAAC,UAAU,CAAC,EAAE,kBAAkB;IACrD,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,qBAAqB;IAC3D,CAAC,oBAAoB,CAAC,MAAM,CAAC,EAAE,cAAc;IAC7C,CAAC,oBAAoB,CAAC,UAAU,CAAC,EAAE,kBAAkB;IACrD,CAAC,oBAAoB,CAAC,YAAY,CAAC,EAAE,oBAAoB;IACzD,CAAC,oBAAoB,CAAC,aAAa,CAAC,EAAE,qBAAqB;IAC3D,CAAC,oBAAoB,CAAC,MAAM,CAAC,EAAE,cAAc;IAC7C,CAAC,oBAAoB,CAAC,KAAK,CAAC,EAAE,aAAa;IAC3C,CAAC,oBAAoB,CAAC,OAAO,CAAC,EAAE,eAAe;IAC/C,CAAC,oBAAoB,CAAC,SAAS,CAAC,EAAE,iBAAiB;CACpD,CAAC;AAEF,MAAM,CAAC,MAAM,uBAAuB,GAAG;IACrC,oBAAoB,CAAC,QAAQ;IAC7B,oBAAoB,CAAC,IAAI;IACzB,oBAAoB,CAAC,MAAM;CAAC,CAAC;AAC/B,MAAM,CAAC,MAAM,4BAA4B,GAAG;IAC1C,oBAAoB,CAAC,QAAQ;IAC7B,oBAAoB,CAAC,UAAU;IAC/B,oBAAoB,CAAC,MAAM;IAC3B,oBAAoB,CAAC,KAAK;CAAC,CAAC;AAE9B,MAAM,UAAU,kBAAkB,CAAC,CAAW,EAAE,CAAW;IACzD,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,IAAI,KAAK,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC3B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,CAAC,KAAK,GAAG,MAAM,CAAC,CAAC;AACnC,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,CAAW,EAAE,CAAW;IACvD,OAAO,yBAAyB,CAAC,kBAAkB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC7D,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,CAAW,EAAE,CAAW;IACrD,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,IAAI,KAAK,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC3B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,CAAC,GAAG,MAAM,GAAG,KAAK,CAAC;AAC5B,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,CAAW,EAAE,CAAW;IACnD,OAAO,yBAAyB,CAAC,cAAc,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AACzD,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,CAAW,EAAE,CAAW;IACvD,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,IAAI,KAAK,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC3B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AACnC,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,CAAW,EAAE,CAAW;IACrD,OAAO,yBAAyB,CAAC,gBAAgB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC3D,CAAC;AAED,MAAM,UAAU,mBAAmB,CAAC,CAAW,EAAE,CAAW;IAC1D,OAAO,yBAAyB,CAAC,iBAAiB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC5D,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,CAAW,EAAE,CAAW;IACxD,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC;AACpF,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,CAAW,EAAE,CAAW;IACxD,OAAO,yBAAyB,CAAC,eAAe,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC1D,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,CAAW,EAAE,CAAW;IACtD,OAAO,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;AACzE,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,CAAW,EAAE,CAAW;IACtD,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,GAAG,MAAM,CAAC,CAAC;AAC3C,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,CAAW,EAAE,CAAW;IACpD,OAAO,yBAAyB,CAAC,eAAe,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC1D,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,CAAW,EAAE,CAAW;IAC3D,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,MAAM,SAAS,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAChD,IAAI,SAAS,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC/B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,CAAC,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,SAAS,CAAC,CAAC;AAC5C,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,CAAW,EAAE,CAAW;IACzD,OAAO,yBAAyB,CAAC,oBAAoB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC/D,CAAC;AAED,MAAM,UAAU,sBAAsB,CAAC,CAAW,EAAE,CAAW;IAC7D,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAC5C,MAAM,SAAS,GAAG,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC;IAChD,IAAI,SAAS,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC/B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,CAAC,MAAM,GAAG,KAAK,GAAG,SAAS,CAAC,GAAG,SAAS,CAAC;AAClD,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,CAAW,EAAE,CAAW;IAC3D,OAAO,yBAAyB,CAAC,sBAAsB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AACjE,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,CAAW,EAAE,CAAW;IAC3D,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC;IACnD,IAAI,GAAG,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IACzB,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,GAAG,CAAC;AACtB,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,CAAW,EAAE,CAAW;IACzD,OAAO,yBAAyB,CAAC,oBAAoB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC/D,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,CAAW,EAAE,CAAW;IAC9D,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC;IACnD,IAAI,GAAG,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IACzB,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,GAAG,CAAC;AACtB,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,CAAW,EAAE,CAAW;IAC5D,OAAO,yBAAyB,CAAC,uBAAuB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAClE,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,CAAW,EAAE,CAAW;IACvD,IAAI,CAAC,CAAC,MAAM,IAAI,CAAC;QAAE,OAAO,GAAG,CAAC;IAC9B,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,OAAO,MAAM,GAAG,CAAC,CAAC,MAAM,CAAC;AAC3B,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,CAAW,EAAE,CAAW;IACrD,OAAO,yBAAyB,CAAC,gBAAgB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAC3D,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,CAAW,EAAE,CAAW;IAC9D,MAAM,MAAM,GAAG,CAAC,CAAC,gBAAgB,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAC3C,MAAM,KAAK,GAAG,CAAC,CAAC,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;IACpD,MAAM,GAAG,GAAG,CAAC,CAAC,MAAM,CAAC;IACrB,MAAM,IAAI,GAAG,GAAG,GAAG,KAAK,GAAG,MAAM,CAAC;IAClC,IAAI,CAAC,MAAM,IAAI,GAAG,CAAC,IAAI,CAAC,IAAI,IAAI,GAAG,CAAC;QAAE,OAAO,GAAG,CAAC;;QAC5C,OAAO,MAAM,GAAG,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,GAAG,GAAG,KAAK,CAAC,CAAC;AACxD,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,CAAW,EAAE,CAAW;IAC5D,OAAO,yBAAyB,CAAC,uBAAuB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AAClE,CAAC;AAED,MAAM,UAAU,yBAAyB,CAAC,QAAgB;IACxD,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAC;AAC5B,CAAC;AAED,MAAM,UAAU,yBAAyB,CAAC,UAAkB;IAC1D,OAAO,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC;AAChE,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,CAAS,EAAE,CAAS;IAClD,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;AACzB,CAAC","sourcesContent":["import BitArray from '@datagrok-libraries/utils/src/bit-array';\nimport {BitArrayMetricsNames} from './typed-metrics/consts';\n\nexport const similarityMetric: { [name: string]: (x: BitArray, y: BitArray) => number } = {\n  [BitArrayMetricsNames.Tanimoto]: tanimotoSimilarity,\n  [BitArrayMetricsNames.Dice]: diceSimilarity,\n  [BitArrayMetricsNames.Asymmetric]: asymmetricSimilarity,\n  [BitArrayMetricsNames.BraunBlanquet]: braunBlanquetSimilarity,\n  [BitArrayMetricsNames.Cosine]: cosineSimilarity,\n  [BitArrayMetricsNames.Kulczynski]: kulczynskiSimilarity,\n  [BitArrayMetricsNames.McConnaughey]: mcConnaugheySimilarity,\n  [BitArrayMetricsNames.RogotGoldberg]: rogotGoldbergSimilarity,\n  [BitArrayMetricsNames.Russel]: russelSimilarity,\n  [BitArrayMetricsNames.Sokal]: sokalSimilarity,\n  [BitArrayMetricsNames.Hamming]: hammingSimilarity,\n  [BitArrayMetricsNames.Euclidean]: euclideanSimilarity,\n};\n\nexport const distanceMetrics: { [name: string]: (x: BitArray, y: BitArray) => number } = {\n  [BitArrayMetricsNames.Tanimoto]: tanimotoDistance,\n  [BitArrayMetricsNames.Dice]: diceDistance,\n  [BitArrayMetricsNames.Asymmetric]: asymmetricDistance,\n  [BitArrayMetricsNames.BraunBlanquet]: braunBlanquetDistance,\n  [BitArrayMetricsNames.Cosine]: cosineDistance,\n  [BitArrayMetricsNames.Kulczynski]: kulczynskiDistance,\n  [BitArrayMetricsNames.McConnaughey]: mcConnaugheyDistance,\n  [BitArrayMetricsNames.RogotGoldberg]: rogotGoldbergDistance,\n  [BitArrayMetricsNames.Russel]: russelDistance,\n  [BitArrayMetricsNames.Sokal]: sokalDistance,\n  [BitArrayMetricsNames.Hamming]: hammingDistance,\n  [BitArrayMetricsNames.Euclidean]: euclideanDistance,\n};\n\nexport const CHEM_SIMILARITY_METRICS = [\n  BitArrayMetricsNames.Tanimoto,\n  BitArrayMetricsNames.Dice,\n  BitArrayMetricsNames.Cosine];\nexport const SEQ_SPACE_SIMILARITY_METRICS = [\n  BitArrayMetricsNames.Tanimoto,\n  BitArrayMetricsNames.Asymmetric,\n  BitArrayMetricsNames.Cosine,\n  BitArrayMetricsNames.Sokal];\n\nexport function tanimotoSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  if (total == 0) return 1.0;\n  const common = x.andWithCountBits(y, true);\n  return common / (total - common);\n}\n\nexport function tanimotoDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(tanimotoSimilarity(x, y));\n}\n\nexport function diceSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  if (total == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return 2 * common / total;\n}\n\nexport function diceDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(diceSimilarity(x, y));\n}\n\nexport function cosineSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() * y.trueCount();\n  if (total == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return common / Math.sqrt(total);\n}\n\nexport function cosineDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(cosineSimilarity(x, y));\n}\n\nexport function euclideanSimilarity(x: BitArray, y: BitArray): number {\n  return getSimilarityFromDistance(euclideanDistance(x, y));\n}\n\nexport function euclideanDistance(x: BitArray, y: BitArray): number {\n  return Math.sqrt(x.trueCount() + y.trueCount() - 2 * x.andWithCountBits(y, true));\n}\n\nexport function hammingSimilarity(x: BitArray, y: BitArray): number {\n  return getSimilarityFromDistance(hammingDistance(x, y));\n}\n\nexport function hammingDistance(x: BitArray, y: BitArray): number {\n  return x.trueCount() + y.trueCount() - 2 * x.andWithCountBits(y, true);\n}\n\nexport function sokalSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  const common = x.andWithCountBits(y, true);\n  return common / (2 * total - 3 * common);\n}\n\nexport function sokalDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(sokalSimilarity(x, y));\n}\n\nexport function kulczynskiSimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  const totalProd = x.trueCount() * y.trueCount();\n  if (totalProd == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return (common * total) / (2 * totalProd);\n}\n\nexport function kulczynskiDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(kulczynskiSimilarity(x, y));\n}\n\nexport function mcConnaugheySimilarity(x: BitArray, y: BitArray): number {\n  const total = x.trueCount() + y.trueCount();\n  const totalProd = x.trueCount() * y.trueCount();\n  if (totalProd == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return (common * total - totalProd) / totalProd;\n}\n\nexport function mcConnaugheyDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(mcConnaugheySimilarity(x, y));\n}\n\nexport function asymmetricSimilarity(x: BitArray, y: BitArray): number {\n  const min = Math.min(x.trueCount(), y.trueCount());\n  if (min == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return common / min;\n}\n\nexport function asymmetricDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(asymmetricSimilarity(x, y));\n}\n\nexport function braunBlanquetSimilarity(x: BitArray, y: BitArray): number {\n  const max = Math.max(x.trueCount(), y.trueCount());\n  if (max == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return common / max;\n}\n\nexport function braunBlanquetDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(braunBlanquetSimilarity(x, y));\n}\n\nexport function russelSimilarity(x: BitArray, y: BitArray): number {\n  if (x.length == 0) return 0.0;\n  const common = x.andWithCountBits(y, true);\n  return common / x.length;\n}\n\nexport function russelDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(russelSimilarity(x, y));\n}\n\nexport function rogotGoldbergSimilarity(x: BitArray, y: BitArray): number {\n  const common = x.andWithCountBits(y, true);\n  const total = x.countBits(true) + y.countBits(true);\n  const len = x.length;\n  const diff = len - total + common;\n  if ((common == len) || (diff == len)) return 1.0;\n  else return common / total + diff / (2 * len - total);\n}\n\nexport function rogotGoldbergDistance(x: BitArray, y: BitArray): number {\n  return getDistanceFromSimilarity(rogotGoldbergSimilarity(x, y));\n}\n\nexport function getSimilarityFromDistance(distance: number) {\n  return 1 / (1 + distance);\n}\n\nexport function getDistanceFromSimilarity(similarity: number) { //in case similarity is 0, use max number for float32\n  return similarity === 0 ? 3.402823E+38 : (1 / similarity) - 1;\n}\n\nexport function numericDistance(x: number, y: number) {\n  return Math.abs(x - y);\n}\n"]}","import { hamming } from './hamming';\nimport { levenstein } from './levenstein';\nimport { needlemanWunch } from './needleman-wunsch';\n/** Enum containing currently supported macromolecule distance functions\n * Hamming distance will be used if the sequences are already aligned\n * Needleman distance will be used for protein sequences with known BLOSUM62 matrix\n * Levenshtein distance will be used for nucleotide sequences as for them substitution matrix is same as identity matrix\n */\nexport var MmDistanceFunctionsNames;\n(function (MmDistanceFunctionsNames) {\n    MmDistanceFunctionsNames[\"HAMMING\"] = \"Hamming\";\n    MmDistanceFunctionsNames[\"LEVENSHTEIN\"] = \"Levenshtein\";\n    MmDistanceFunctionsNames[\"NEEDLEMANN_WUNSCH\"] = \"Needlemann-Wunsch\";\n})(MmDistanceFunctionsNames || (MmDistanceFunctionsNames = {}));\n;\nexport const mmDistanceFunctions = {\n    [MmDistanceFunctionsNames.HAMMING]: hamming,\n    [MmDistanceFunctionsNames.LEVENSHTEIN]: levenstein,\n    [MmDistanceFunctionsNames.NEEDLEMANN_WUNSCH]: needlemanWunch\n};\n//# sourceMappingURL=data:application/json;base64,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","/**\n * Denotes a vector of floating poit values.\n *\n * @export\n * @class Vector\n * @extends {Float32Array}\n */\nexport class Vector extends Float32Array {\n}\n/**\n * Denotes a two-dimensional matrix.\n *\n * @export\n * @class Matrix\n * @extends {Array<Vector>}\n */\nexport class Matrix extends Array {\n}\n/**\n * Denotes cartesian coordinates.\n *\n * @export\n * @class Coordinates\n * @extends {Matrix}\n */\nexport class Coordinates extends Matrix {\n}\n/**\n * Denotes an array of arbitrary-typed vectors.\n *\n * @export\n * @class Vectors\n * @extends {Array<any>}\n */\nexport class Vectors extends Array {\n}\n//# sourceMappingURL=data:application/json;base64,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","\"use strict\";\n// Reference: https://www.geeksforgeeks.org/jaro-and-jaro-winkler-similarity/\nObject.defineProperty(exports, \"__esModule\", { value: true });\nexports.jaroWinkler = exports.jaro = void 0;\n/**\n *\n * @param str1 String 1 for compare\n * @param str2 String 2 for compare\n * @param options to control case sensitive or not\n */\nfunction jaro(str1, str2, options) {\n    // Exit early if either are empty.\n    if (str1.length === 0 || str2.length === 0) {\n        return 0;\n    }\n    // Convert to upper if case-sensitive is false.\n    if (options && !options.caseSensitive) {\n        str1 = str1.toUpperCase();\n        str2 = str2.toUpperCase();\n    }\n    // Exact match\n    if (str1 === str2) {\n        return 1;\n    }\n    // Number of matches\n    var m = 0;\n    // Length of two Strings\n    var len1 = str1.length;\n    var len2 = str2.length;\n    // Maximum distance\n    var window = Math.floor(Math.max(len1, len2) / 2) - 1;\n    // Hash for matches\n    var str1Hash = new Array(len1);\n    var str2Hash = new Array(len2);\n    for (var i = 0; i < len1; i++) {\n        for (var j = Math.max(0, i - window); j <= Math.min(len2, i + window + 1); j++) {\n            if (!str1Hash[i] && !str2Hash[j] && str1[i] === str2[j]) {\n                ++m;\n                str1Hash[i] = str2Hash[j] = true;\n                break;\n            }\n        }\n    }\n    // Exit early if no matches were found.\n    if (m === 0) {\n        return 0;\n    }\n    // Count the transpositions.\n    var t = 0;\n    var point = 0;\n    for (var i = 0; i < len1; i++) {\n        if (str1Hash[i]) {\n            while (!str2Hash[point]) {\n                point++;\n            }\n            if (str1.charAt(i) !== str2.charAt(point++)) {\n                t++;\n            }\n        }\n    }\n    t /= 2;\n    return (m / len1 + m / len2 + (m - t) / m) / 3;\n}\nexports.jaro = jaro;\n/**\n *\n * @param str1 String 1 for compare\n * @param str2 String 2 for compare\n * @param options to control case sensitive or not\n */\nfunction jaroWinkler(str1, str2, options) {\n    // Jaro Distance\n    var jaroDist = jaro(str1, str2, options);\n    // Same prefix length, maxium is 4\n    var prefix = 0;\n    if (jaroDist > 0.7) {\n        var minIndex = Math.min(str1.length, str2.length);\n        var i = 0;\n        while (str1[i] === str2[i] && i < 4 && i < minIndex) {\n            ++prefix;\n            i++;\n        }\n        jaroDist += 0.1 * prefix * (1 - jaroDist);\n    }\n    return jaroDist;\n}\nexports.jaroWinkler = jaroWinkler;\n"],"names":["tanimotoDistance","x","y","getDistanceFromSimilarity","total","trueCount","common","andWithCountBits","tanimotoSimilarity","diceDistance","diceSimilarity","cosineDistance","Math","sqrt","cosineSimilarity","euclideanDistance","hammingDistance","sokalDistance","sokalSimilarity","kulczynskiDistance","totalProd","kulczynskiSimilarity","mcConnaugheyDistance","mcConnaugheySimilarity","asymmetricDistance","min","asymmetricSimilarity","braunBlanquetDistance","max","braunBlanquetSimilarity","russelDistance","length","russelSimilarity","rogotGoldbergDistance","countBits","len","diff","rogotGoldbergSimilarity","similarity","numericDistance","abs","Tanimoto","Dice","Asymmetric","BraunBlanquet","Cosine","Kulczynski","McConnaughey","RogotGoldberg","Russel","Sokal","Hamming","Euclidean","MmDistanceFunctionsNames","mmDistanceFunctions","HAMMING","LEVENSHTEIN","NEEDLEMANN_WUNSCH","n","Vector","Float32Array","exports","str1","str2","options","jaroDist","caseSensitive","toUpperCase","m","len1","len2","window","floor","str1Hash","Array","str2Hash","i","j","t","point","charAt","jaro","prefix","minIndex"],"sourceRoot":""}