@datagrok/bio 2.0.7 → 2.0.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. package/detectors.js +3 -7
  2. package/dist/package-test.js +61 -40
  3. package/dist/package.js +37 -32
  4. package/package.json +2 -2
  5. package/src/calculations/monomerLevelMols.ts +0 -1
  6. package/src/tests/Palettes-test.ts +22 -3
  7. package/src/tests/WebLogo-positions-test.ts +3 -4
  8. package/test-Bio-7770371320b2-1095ee64.html +374 -0
package/package.json CHANGED
@@ -5,7 +5,7 @@
5
5
  "name": "Leonid Stolbov",
6
6
  "email": "lstolbov@datagrok.ai"
7
7
  },
8
- "version": "2.0.7",
8
+ "version": "2.0.8",
9
9
  "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
10
10
  "repository": {
11
11
  "type": "git",
@@ -14,7 +14,7 @@
14
14
  },
15
15
  "dependencies": {
16
16
  "@biowasm/aioli": ">=2.4.0",
17
- "@datagrok-libraries/bio": "^4.2.1",
17
+ "@datagrok-libraries/bio": "^4.3.0",
18
18
  "@datagrok-libraries/chem-meta": "1.0.0",
19
19
  "@datagrok-libraries/ml": "^6.2.0",
20
20
  "@datagrok-libraries/utils": "^1.6.2",
package/src/calculations/monomerLevelMols.ts CHANGED
@@ -65,7 +65,6 @@ M V30 BEGIN CTAB
65
65
  molV3000 += 'M V30 END BOND\n';
66
66
  molV3000 += 'M V30 END CTAB\n';
67
67
  molV3000 += 'M END';
68
- console.log(molV3000);
69
68
  mols[i] = molV3000;
70
69
  }
71
70
 
package/src/tests/Palettes-test.ts CHANGED
@@ -1,12 +1,31 @@
1
- import {after, before, category, test, expect, expectObject} from '@datagrok-libraries/utils/src/test';
2
-
3
1
  import * as grok from 'datagrok-api/grok';
4
2
  import * as ui from 'datagrok-api/ui';
5
3
  import * as DG from 'datagrok-api/dg';
6
4
 
7
- import {_testPaletteN, _testPaletteAA} from '@datagrok-libraries/bio/src/tests/palettes.test';
5
+ import {after, before, category, test, expect, expectObject} from '@datagrok-libraries/utils/src/test';
6
+
7
+ import {_testPaletteN, _testPaletteAA} from '@datagrok-libraries/bio/src/tests/palettes-tests';
8
+ import {ALPHABET, UnitsHandler} from '@datagrok-libraries/bio/src/utils/units-handler';
9
+ import {AminoacidsPalettes} from '@datagrok-libraries/bio/src/aminoacids';
8
10
 
9
11
  category('Palettes', () => {
10
12
  test('testPaletteN', async () => { await _testPaletteN(); });
11
13
  test('testPaletteAA', async () => { await _testPaletteAA(); });
14
+
15
+ test('testPalettePtMe', async () => {
16
+ const colorMeNle = AminoacidsPalettes.GrokGroups.get('MeNle');
17
+ const colorMeA = AminoacidsPalettes.GrokGroups.get('MeA');
18
+ const colorMeG = AminoacidsPalettes.GrokGroups.get('MeG');
19
+ const colorMeF = AminoacidsPalettes.GrokGroups.get('MeF');
20
+
21
+ const colorL = AminoacidsPalettes.GrokGroups.get('L');
22
+ const colorA = AminoacidsPalettes.GrokGroups.get('A');
23
+ const colorG = AminoacidsPalettes.GrokGroups.get('G');
24
+ const colorF = AminoacidsPalettes.GrokGroups.get('F');
25
+
26
+ expect(colorMeNle, colorL);
27
+ expect(colorMeA, colorA);
28
+ expect(colorMeG, colorG);
29
+ expect(colorMeF, colorF);
30
+ });
12
31
  });
package/src/tests/WebLogo-positions-test.ts CHANGED
@@ -1,4 +1,4 @@
1
- import {after, before, category, test, expect, expectObject} from '@datagrok-libraries/utils/src/test';
1
+ import {after, before, category, test, expect, expectObject, delay} from '@datagrok-libraries/utils/src/test';
2
2
 
3
3
  import * as grok from 'datagrok-api/grok';
4
4
  import * as ui from 'datagrok-api/ui';
@@ -31,6 +31,7 @@ ATC-G-TTGC--
31
31
  tvList.forEach((tv: DG.TableView) => tv.close());
32
32
  currentView = grok.shell.tv;
33
33
  });
34
+
34
35
  test('allPositions', async () => {
35
36
  const df: DG.DataFrame = DG.DataFrame.fromCsv(csvDf1);
36
37
  const tv: DG.TableView = grok.shell.addTableView(df);
@@ -71,8 +72,8 @@ ATC-G-TTGC--
71
72
  expect(positions[i].freq[key].count, resAllDf1[i].freq[key].count);
72
73
  }
73
74
  }
74
-
75
75
  });
76
+
76
77
  test('positions with shrinkEmptyTail option true (filterd)', async () => {
77
78
  let csvDf2 = `seq
78
79
  -TC-G-TTGC--
@@ -122,7 +123,6 @@ ATC-G-TTGC--
122
123
  expect(positions[i].freq[key].count, resAllDf1[i].freq[key].count);
123
124
  }
124
125
  }
125
-
126
126
  });
127
127
 
128
128
  test('positions with skipEmptyPositions option', async () => {
@@ -163,5 +163,4 @@ ATC-G-TTGC--
163
163
  }
164
164
  }
165
165
  });
166
-
167
166
  });
package/test-Bio-7770371320b2-1095ee64.html ADDED
@@ -0,0 +1,374 @@
1
+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit 1095ee64.</title><style type="text/css">html,
2
+ body {
3
+ font-family: Arial, Helvetica, sans-serif;
4
+ font-size: 1rem;
5
+ margin: 0;
6
+ padding: 0;
7
+ color: #333;
8
+ }
9
+ body {
10
+ padding: 2rem 1rem;
11
+ font-size: 0.85rem;
12
+ }
13
+ #jesthtml-content {
14
+ margin: 0 auto;
15
+ max-width: 70rem;
16
+ }
17
+ header {
18
+ display: flex;
19
+ align-items: center;
20
+ }
21
+ #title {
22
+ margin: 0;
23
+ flex-grow: 1;
24
+ }
25
+ #logo {
26
+ height: 4rem;
27
+ }
28
+ #timestamp {
29
+ color: #777;
30
+ margin-top: 0.5rem;
31
+ }
32
+
33
+ /** SUMMARY */
34
+ #summary {
35
+ color: #333;
36
+ margin: 2rem 0;
37
+ display: flex;
38
+ font-family: monospace;
39
+ font-size: 1rem;
40
+ }
41
+ #summary > div {
42
+ margin-right: 2rem;
43
+ background: #eee;
44
+ padding: 1rem;
45
+ min-width: 15rem;
46
+ }
47
+ #summary > div:last-child {
48
+ margin-right: 0;
49
+ }
50
+ @media only screen and (max-width: 720px) {
51
+ #summary {
52
+ flex-direction: column;
53
+ }
54
+ #summary > div {
55
+ margin-right: 0;
56
+ margin-top: 2rem;
57
+ }
58
+ #summary > div:first-child {
59
+ margin-top: 0;
60
+ }
61
+ }
62
+
63
+ .summary-total {
64
+ font-weight: bold;
65
+ margin-bottom: 0.5rem;
66
+ }
67
+ .summary-passed {
68
+ color: #4f8a10;
69
+ border-left: 0.4rem solid #4f8a10;
70
+ padding-left: 0.5rem;
71
+ }
72
+ .summary-failed,
73
+ .summary-obsolete-snapshots {
74
+ color: #d8000c;
75
+ border-left: 0.4rem solid #d8000c;
76
+ padding-left: 0.5rem;
77
+ }
78
+ .summary-pending {
79
+ color: #9f6000;
80
+ border-left: 0.4rem solid #9f6000;
81
+ padding-left: 0.5rem;
82
+ }
83
+ .summary-empty {
84
+ color: #999;
85
+ border-left: 0.4rem solid #999;
86
+ }
87
+
88
+ .test-result {
89
+ padding: 1rem;
90
+ margin-bottom: 0.25rem;
91
+ }
92
+ .test-result:last-child {
93
+ border: 0;
94
+ }
95
+ .test-result.passed {
96
+ background-color: #dff2bf;
97
+ color: #4f8a10;
98
+ }
99
+ .test-result.failed {
100
+ background-color: #ffbaba;
101
+ color: #d8000c;
102
+ }
103
+ .test-result.pending {
104
+ background-color: #ffdf61;
105
+ color: #9f6000;
106
+ }
107
+
108
+ .test-info {
109
+ display: flex;
110
+ justify-content: space-between;
111
+ }
112
+ .test-suitename {
113
+ width: 20%;
114
+ text-align: left;
115
+ font-weight: bold;
116
+ word-break: break-word;
117
+ }
118
+ .test-title {
119
+ width: 40%;
120
+ text-align: left;
121
+ font-style: italic;
122
+ }
123
+ .test-status {
124
+ width: 20%;
125
+ text-align: right;
126
+ }
127
+ .test-duration {
128
+ width: 10%;
129
+ text-align: right;
130
+ font-size: 0.75rem;
131
+ }
132
+
133
+ .failureMessages {
134
+ padding: 0 1rem;
135
+ margin-top: 1rem;
136
+ border-top: 1px dashed #d8000c;
137
+ }
138
+ .failureMessages.suiteFailure {
139
+ border-top: none;
140
+ }
141
+ .failureMsg {
142
+ white-space: pre-wrap;
143
+ white-space: -moz-pre-wrap;
144
+ white-space: -pre-wrap;
145
+ white-space: -o-pre-wrap;
146
+ word-wrap: break-word;
147
+ }
148
+
149
+ .suite-container {
150
+ margin-bottom: 2rem;
151
+ }
152
+ .suite-info {
153
+ padding: 1rem;
154
+ background-color: #eee;
155
+ color: #777;
156
+ display: flex;
157
+ align-items: center;
158
+ margin-bottom: 0.25rem;
159
+ }
160
+ .suite-info .suite-path {
161
+ word-break: break-all;
162
+ flex-grow: 1;
163
+ font-family: monospace;
164
+ font-size: 1rem;
165
+ }
166
+ .suite-info .suite-time {
167
+ margin-left: 0.5rem;
168
+ padding: 0.2rem 0.3rem;
169
+ font-size: 0.75rem;
170
+ }
171
+ .suite-info .suite-time.warn {
172
+ background-color: #d8000c;
173
+ color: #fff;
174
+ }
175
+
176
+ /* CONSOLE LOGS */
177
+ .suite-consolelog {
178
+ margin-bottom: 0.25rem;
179
+ padding: 1rem;
180
+ background-color: #efefef;
181
+ }
182
+ .suite-consolelog-header {
183
+ font-weight: bold;
184
+ }
185
+ .suite-consolelog-item {
186
+ padding: 0.5rem;
187
+ }
188
+ .suite-consolelog-item pre {
189
+ margin: 0.5rem 0;
190
+ white-space: pre-wrap;
191
+ white-space: -moz-pre-wrap;
192
+ white-space: -pre-wrap;
193
+ white-space: -o-pre-wrap;
194
+ word-wrap: break-word;
195
+ }
196
+ .suite-consolelog-item-origin {
197
+ color: #777;
198
+ font-weight: bold;
199
+ }
200
+ .suite-consolelog-item-message {
201
+ color: #000;
202
+ font-size: 1rem;
203
+ padding: 0 0.5rem;
204
+ }
205
+
206
+ /* OBSOLETE SNAPSHOTS */
207
+ .suite-obsolete-snapshots {
208
+ margin-bottom: 0.25rem;
209
+ padding: 1rem;
210
+ background-color: #ffbaba;
211
+ color: #d8000c;
212
+ }
213
+ .suite-obsolete-snapshots-header {
214
+ font-weight: bold;
215
+ }
216
+ .suite-obsolete-snapshots-item {
217
+ padding: 0.5rem;
218
+ }
219
+ .suite-obsolete-snapshots-item pre {
220
+ margin: 0.5rem 0;
221
+ white-space: pre-wrap;
222
+ white-space: -moz-pre-wrap;
223
+ white-space: -pre-wrap;
224
+ white-space: -o-pre-wrap;
225
+ word-wrap: break-word;
226
+ }
227
+ .suite-obsolete-snapshots-item-message {
228
+ color: #000;
229
+ font-size: 1rem;
230
+ padding: 0 0.5rem;
231
+ }
232
+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit 1095ee64.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-09-19 08:10:18</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">40.792s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">25.775s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Failed : 183 : Bio.renderers.setRendererManually : Error: Tag 'cell.renderer' has been manually set to 'MacromoleculeDifference' for column but after df was added as table, tag 'cell.renderer' has reset to 'sequence' instead of manual 'MacromoleculeDifference'.
233
+
234
+ at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:68:20
235
+ at Generator.next (&lt;anonymous&gt;)
236
+ at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
237
+ at runMicrotasks (&lt;anonymous&gt;)
238
+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
239
+ at Generator.next (&lt;anonymous&gt;)
240
+ at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
241
+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
242
+ at Generator.next (&lt;anonymous&gt;)
243
+ at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:34:71
244
+ at new Promise (&lt;anonymous&gt;)
245
+ at Object.&lt;anonymous&gt;.__awaiter (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:30:12)
246
+ at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:38:23)
247
+ at Promise.then.completed (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/utils.js:391:28)
248
+ at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:66:11
249
+ at Generator.next (&lt;anonymous&gt;)
250
+ at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
251
+ at runMicrotasks (&lt;anonymous&gt;)
252
+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 6 : Bio.WebLogo.testGetStats : OK
253
+ Test result : Success : 0 : Bio.WebLogo.testGetAlphabetSimilarity : OK
254
+ Test result : Success : 2 : Bio.WebLogo.testPickupPaletteN1 : OK
255
+ Test result : Success : 2 : Bio.WebLogo.testPickupPaletteN1e : OK
256
+ Test result : Success : 2 : Bio.WebLogo.testPickupPaletteAA1 : OK
257
+ Test result : Success : 2 : Bio.WebLogo.testPickupPaletteX : OK
258
+ Test result : Success : 1 : Bio.WebLogo.monomerToText.longMonomerSingle : OK
259
+ Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerShort : OK
260
+ Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerLong56 : OK
261
+ Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartShort : OK
262
+ Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartLong56 : OK
263
+ Test result : Success : 1 : Bio.Palettes.testPaletteN : OK
264
+ Test result : Success : 0 : Bio.Palettes.testPaletteAA : OK
265
+ Test result : Success : 0 : Bio.Palettes.testPalettePtMe : OK
266
+ Test result : Success : 49 : Bio.detectors.NegativeEmpty : OK
267
+ Test result : Success : 15 : Bio.detectors.Negative1 : OK
268
+ Test result : Success : 22 : Bio.detectors.Negative2 : OK
269
+ Test result : Success : 16 : Bio.detectors.Negative3 : OK
270
+ Test result : Success : 14 : Bio.detectors.NegativeSmiles : OK
271
+ Test result : Success : 9 : Bio.detectors.Dna1 : OK
272
+ Test result : Success : 26 : Bio.detectors.Rna1 : OK
273
+ Test result : Success : 41 : Bio.detectors.AA1 : OK
274
+ Test result : Success : 26 : Bio.detectors.MsaDna1 : OK
275
+ Test result : Success : 20 : Bio.detectors.MsaAA1 : OK
276
+ Test result : Success : 40 : Bio.detectors.SepDna : OK
277
+ Test result : Success : 21 : Bio.detectors.SepRna : OK
278
+ Test result : Success : 17 : Bio.detectors.SepPt : OK
279
+ Test result : Success : 15 : Bio.detectors.SepUn1 : OK
280
+ Test result : Success : 19 : Bio.detectors.SepUn2 : OK
281
+ Test result : Success : 18 : Bio.detectors.SepMsaN1 : OK
282
+ Test result : Success : 653 : Bio.detectors.SamplesFastaCsvPt : OK
283
+ Test result : Success : 17 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
284
+ Test result : Success : 20 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
285
+ Test result : Success : 89 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
286
+ Test result : Success : 417 : Bio.detectors.SamplesFastaFastaPt : OK
287
+ Test result : Success : 1139 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
288
+ Test result : Success : 28 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
289
+ Test result : Success : 211 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
290
+ Test result : Success : 285 : Bio.detectors.samplesMsaComplexUn : OK
291
+ Test result : Success : 38 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
292
+ Test result : Success : 212 : Bio.detectors.samplesIdCsvNegativeID : OK
293
+ Test result : Success : 242 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
294
+ Test result : Success : 208 : Bio.detectors.samplesHelmCsvHELM : OK
295
+ Test result : Success : 13 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
296
+ Test result : Success : 248 : Bio.detectors.samplesTestHelmNegativeID : OK
297
+ Test result : Success : 15 : Bio.detectors.samplesTestHelmNegativeTestType : OK
298
+ Test result : Success : 9 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
299
+ Test result : Success : 4 : Bio.detectors.samplesTestHelmNegativeValid : OK
300
+ Test result : Success : 5 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
301
+ Test result : Success : 8 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
302
+ Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
303
+ Test result : Success : 1095 : Bio.detectors.samplesTestDemogNegativeAll : OK
304
+ Test result : Success : 889 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
305
+ Test result : Success : 274 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
306
+ Test result : Success : 273 : Bio.detectors.samplesFastaPtPosSequence : OK
307
+ Test result : Success : 216 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
308
+ Test result : Success : 348 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
309
+ Test result : Success : 7 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
310
+ Test result : Success : 14 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
311
+ Test result : Success : 29 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
312
+ Test result : Success : 231 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
313
+ Test result : Success : 5 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
314
+ Test result : Success : 219 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
315
+ Test result : Success : 24 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
316
+ Test result : Success : 249 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
317
+ Test result : Success : 1661 : Bio.MSA.isCorrect : OK
318
+ Test result : Success : 306 : Bio.MSA.isCorrectLong : OK
319
+ Test result : Success : 1216 : Bio.sequenceSpace.sequenceSpaceOpens : OK
320
+ Test result : Success : 4269 : Bio.sequenceSpace.sequenceSpaceOpensWithEmptyRows : OK
321
+ Test result : Success : 947 : Bio.activityCliffs.activityCliffsOpen : OK
322
+ Test result : Success : 853 : Bio.activityCliffs.activityCliffsOpenWithEmptyRows : OK
323
+ Test result : Success : 1 : Bio.splitters.helm1 : OK
324
+ Test result : Success : 1 : Bio.splitters.helm2 : OK
325
+ Test result : Success : 1 : Bio.splitters.helm3-multichar : OK
326
+ Test result : Success : 1 : Bio.splitters.testHelm1 : OK
327
+ Test result : Success : 1 : Bio.splitters.testHelm2 : OK
328
+ Test result : Success : 1 : Bio.splitters.testHelm3 : OK
329
+ Test result : Success : 335 : Bio.splitters.splitToMonomers : OK
330
+ Test result : Success : 2 : Bio.splitters.getHelmMonomers : OK
331
+ Test result : Success : 93 : Bio.renderers.long sequence performance : OK
332
+ Test result : Success : 676 : Bio.renderers.many sequence performance : OK
333
+ Test result : Success : 269 : Bio.renderers.rendererMacromoleculeFasta : OK
334
+ Test result : Success : 218 : Bio.renderers.rendererMacromoleculeSeparator : OK
335
+ Test result : Success : 72 : Bio.renderers.rendererMacromoleculeDifference : OK
336
+ Test result : Success : 534 : Bio.renderers.afterMsa : OK
337
+ Test result : Success : 238 : Bio.renderers.afterConvert : OK
338
+ Test result : Success : 207 : Bio.renderers.selectRendererBySemType : OK
339
+ Test result : Success : 6 : Bio.converters.testFastaPtToSeparator : OK
340
+ Test result : Success : 10 : Bio.converters.testFastaDnaToSeparator : OK
341
+ Test result : Success : 6 : Bio.converters.testFastaRnaToSeparator : OK
342
+ Test result : Success : 5 : Bio.converters.testFastaGapsToSeparator : OK
343
+ Test result : Success : 2 : Bio.converters.testFastaPtToHelm : OK
344
+ Test result : Success : 1 : Bio.converters.testFastaDnaToHelm : OK
345
+ Test result : Success : 1 : Bio.converters.testFastaRnaToHelm : OK
346
+ Test result : Success : 2 : Bio.converters.testFastaGapsToHelm : OK
347
+ Test result : Success : 1 : Bio.converters.testSeparatorPtToFasta : OK
348
+ Test result : Success : 1 : Bio.converters.testSeparatorDnaToFasta : OK
349
+ Test result : Success : 0 : Bio.converters.testSeparatorRnaToFasta : OK
350
+ Test result : Success : 0 : Bio.converters.testSeparatorGapsToFasta : OK
351
+ Test result : Success : 0 : Bio.converters.testSeparatorPtToHelm : OK
352
+ Test result : Success : 1 : Bio.converters.testSeparatorDnaToHelm : OK
353
+ Test result : Success : 0 : Bio.converters.testSeparatorRnaToHelm : OK
354
+ Test result : Success : 0 : Bio.converters.testSeparatorGapsToHelm : OK
355
+ Test result : Success : 0 : Bio.converters.testHelmDnaToFasta : OK
356
+ Test result : Success : 1 : Bio.converters.testHelmRnaToFasta : OK
357
+ Test result : Success : 0 : Bio.converters.testHelmPtToFasta : OK
358
+ Test result : Success : 0 : Bio.converters.testHelmDnaToSeparator : OK
359
+ Test result : Success : 0 : Bio.converters.testHelmRnaToSeparator : OK
360
+ Test result : Success : 0 : Bio.converters.testHelmPtToSeparator : OK
361
+ Test result : Success : 2 : Bio.converters.testHelmLoneRibose : OK
362
+ Test result : Success : 3 : Bio.converters.testHelmLoneDeoxyribose : OK
363
+ Test result : Success : 1 : Bio.converters.testHelmLonePhosphorus : OK
364
+ Test result : Success : 0 : Bio.fastaFileHandler.testNormalFormatting : OK
365
+ Test result : Success : 1 : Bio.fastaFileHandler.testExtraSpaces : OK
366
+ Test result : Success : 0 : Bio.fastaFileHandler.testExtraNewlines : OK
367
+ Test result : Success : 111 : Bio.WebLogo-positions.allPositions : OK
368
+ Test result : Success : 116 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
369
+ Test result : Success : 126 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
370
+ Test result : Success : 8 : Bio.checkInputColumn.testMsaPos : OK
371
+ Test result : Success : 2 : Bio.checkInputColumn.testMsaNegHelm : OK
372
+ Test result : Success : 2 : Bio.checkInputColumn.testMsaNegUN : OK
373
+ Test result : Success : 1 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
374
+ </pre></div></div></div></div></body></html>