@datagrok/bio 2.0.7 → 2.0.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/detectors.js +3 -7
- package/dist/package-test.js +61 -40
- package/dist/package.js +37 -32
- package/package.json +2 -2
- package/src/calculations/monomerLevelMols.ts +0 -1
- package/src/tests/Palettes-test.ts +22 -3
- package/src/tests/WebLogo-positions-test.ts +3 -4
- package/test-Bio-7770371320b2-1095ee64.html +374 -0
package/detectors.js
CHANGED
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@@ -38,6 +38,7 @@ class BioPackageDetectors extends DG.Package {
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static PeptideFastaAlphabet = new Set([
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'G', 'L', 'Y', 'S', 'E', 'Q', 'D', 'N', 'F', 'A',
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'K', 'R', 'H', 'C', 'V', 'P', 'W', 'I', 'M', 'T',
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+
'MeNle', 'MeA', 'MeG', 'MeF',
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]);
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static DnaFastaAlphabet = new Set(['A', 'C', 'G', 'T']);
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@@ -93,7 +94,7 @@ class BioPackageDetectors extends DG.Package {
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];
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const candidateAlphabets = [
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96
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-
[ALPHABET.PT, BioPackageDetectors.PeptideFastaAlphabet, 0.
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97
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+
[ALPHABET.PT, BioPackageDetectors.PeptideFastaAlphabet, 0.50],
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[ALPHABET.DNA, BioPackageDetectors.DnaFastaAlphabet, 0.55],
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[ALPHABET.RNA, BioPackageDetectors.RnaFastaAlphabet, 0.55],
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];
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@@ -315,12 +316,7 @@ class BioPackageDetectors extends DG.Package {
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let mRes;
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const m = ma[0];
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if (m.length > 1) {
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-
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mRes = BioPackageDetectors.aaSynonyms[m];
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} else {
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mRes = '';
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console.debug(`Long monomer '${m}' has not a short synonym.`);
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-
}
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+
mRes = ma[1];
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} else {
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mRes = m;
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}
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