@datagrok-libraries/bio 4.4.7 → 5.1.0

package/src/viewers/web-logo.d.ts

@@ -10,14 +10,6 @@ declare global {
         getCursorPosition(event: MouseEvent, r: number): DG.Point;
     }
 }
-export declare type MonomerFreqs = {
-    [m: string]: number;
-};
-export declare type SeqColStats = {
-    freq: MonomerFreqs;
-    sameLength: boolean;
-};
-export declare type SplitterFunc = (seq: string) => string[];
 export declare class PositionMonomerInfo {
     /** Sequences count with monomer in position */
     count: number;
@@ -62,7 +54,7 @@ export declare class WebLogo extends DG.JsViewer {
     private rowsNull;
     private visibleSlider;
     private allowResize;
-    private currentRange;
+    private turnOfResizeForOneSetValue;
     private _positionWidth;
     positionWidth: number;
     minHeight: number;
@@ -91,6 +83,7 @@ export declare class WebLogo extends DG.JsViewer {
     private get positionMarginValue();
     /** Count of position rendered for calculations countOfRenderPositions */
     private get countOfRenderPositions();
+    private get canvasWidthWithRatio();
     /** Position of start rendering */
     private get firstVisibleIndex();
     private viewSubs;
@@ -104,11 +97,14 @@ export declare class WebLogo extends DG.JsViewer {
     /** Updates {@link positionNames} and calculates {@link startPosition} and {@link endPosition}.
      */
     private updatePositions;
+    private get widthArea();
+    private get heightArea();
+    private get xScale();
+    private get yScale();
     private checkIsHideSlider;
     setSliderVisibility(visible: boolean): void;
-    /** Sets {@link slider}, needed to set slider options and to update slider position.
-     */
-    private setSlider;
+    /** Updates {@link slider}, needed to set slider options and to update slider position. */
+    private updateSlider;
     /** Handler of property change events. */
     onPropertyChanged(property: DG.Property): void;
     /** Add filter handlers when table is a attached  */
@@ -128,64 +124,6 @@ export declare class WebLogo extends DG.JsViewer {
     render(recalc?: boolean): void;
     /** Calculate canvas size an positionWidth and updates properties */
     private calcSize;
-    /** Selects a suitable palette based on column data
-     * @param {DG.Column} seqCol Column to look for a palette
-     * @param {number}  minLength minimum length of sequence to detect palette (empty strings are allowed)
-     * @return {SeqPalette} Palette corresponding to the alphabet of the sequences in the column
-     */
-    static pickUpPalette(seqCol: DG.Column, minLength?: number): SeqPalette;
     getAlphabetSize(): number;
-    /** Stats of sequences with specified splitter func, returns { freq, sameLength }.
-     * @param {DG.Column} seqCol
-     * @param {number} minLength
-     * @param {SplitterFunc} splitter
-     * @return { SeqColStats }, sameLength: boolean } stats of column sequences
-     */
-    static getStats(seqCol: DG.Column, minLength: number, splitter: SplitterFunc): SeqColStats;
-    /** Calculate similarity in current sequence and alphabet.
-     * @param {MonomerFreqs} freq
-     * @param {Set<string>} alphabet
-     * @param {string} gapSymbol
-     * @return {number} Cosine similarity
-     */
-    static getAlphabetSimilarity(freq: MonomerFreqs, alphabet: Set<string>, gapSymbol?: string): number;
-    static pickUpSeqCol(df: DG.DataFrame): DG.Column | null;
-    private static monomerRe;
-    /** Only some of the synonyms. These were obtained from the clustered oligopeptide dataset. */
-    private static aaSynonyms;
-    /** Split sequence for single character monomers, square brackets multichar monomer names or gap symbol.
-     * @param {any} seq object with sequence
-     * @return {string[]} array of monomers
-     */
-    static splitterAsFasta(seq: any): string[];
-    private static helmRe;
-    private static helmPp1Re;
-    /** Splits Helm string to monomers, but does not replace monomer names to other notation (e.g. for RNA).
-     * Only for linear polymers, does not split RNA for ribose and phosphate monomers.
-     * @param {string} seq Source string of HELM notation
-     * @return {string[]}
-     */
-    static splitterAsHelm(seq: any): string[];
-    /** Gets method to split sequence by separator
-     * @param {string} separator
-     * @param limit
-     * @return {SplitterFunc}
-     */
-    static getSplitterWithSeparator(separator: string, limit?: number | undefined): SplitterFunc;
-    /** Get splitter method to split sequences to monomers
-     * @param {string} units
-     * @param {string} separator
-     * @param limit
-     * @return {SplitterFunc}
-     */
-    static getSplitter(units: string, separator: string, limit?: number | undefined): SplitterFunc;
-    /** Generate splitter function for sequence column
-     * @param {DG.Column} col
-     * @return {SplitterFunc} Splitter function
-     */
-    static getSplitterForColumn(col: DG.Column): SplitterFunc;
-    private static longMonomerPartRe;
-    /** Convert long monomer names to short ones */
-    static monomerToShort(amino: string, maxLengthOfMonomer: number): string;
 }
 //# sourceMappingURL=web-logo.d.ts.map

package/src/viewers/web-logo.d.ts.map

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