@cyanheads/pubmed-mcp-server 2.10.19 → 2.10.20

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (84) hide show
  1. package/AGENTS.md +7 -4
  2. package/CLAUDE.md +7 -4
  3. package/Dockerfile +12 -3
  4. package/README.md +7 -7
  5. package/changelog/2.10.x/2.10.20.md +63 -0
  6. package/dist/mcp-server/tools/definitions/_text.d.ts.map +1 -1
  7. package/dist/mcp-server/tools/definitions/_text.js +10 -5
  8. package/dist/mcp-server/tools/definitions/_text.js.map +1 -1
  9. package/dist/mcp-server/tools/definitions/fetch-articles.tool.d.ts.map +1 -1
  10. package/dist/mcp-server/tools/definitions/fetch-articles.tool.js +28 -10
  11. package/dist/mcp-server/tools/definitions/fetch-articles.tool.js.map +1 -1
  12. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts +27 -9
  13. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts.map +1 -1
  14. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.js +577 -485
  15. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.js.map +1 -1
  16. package/dist/mcp-server/tools/definitions/find-related.tool.d.ts +5 -5
  17. package/dist/mcp-server/tools/definitions/find-related.tool.d.ts.map +1 -1
  18. package/dist/mcp-server/tools/definitions/find-related.tool.js +12 -8
  19. package/dist/mcp-server/tools/definitions/find-related.tool.js.map +1 -1
  20. package/dist/mcp-server/tools/definitions/lookup-citation.tool.d.ts +11 -7
  21. package/dist/mcp-server/tools/definitions/lookup-citation.tool.d.ts.map +1 -1
  22. package/dist/mcp-server/tools/definitions/lookup-citation.tool.js +70 -34
  23. package/dist/mcp-server/tools/definitions/lookup-citation.tool.js.map +1 -1
  24. package/dist/mcp-server/tools/definitions/lookup-mesh.tool.d.ts +2 -1
  25. package/dist/mcp-server/tools/definitions/lookup-mesh.tool.d.ts.map +1 -1
  26. package/dist/mcp-server/tools/definitions/lookup-mesh.tool.js +11 -3
  27. package/dist/mcp-server/tools/definitions/lookup-mesh.tool.js.map +1 -1
  28. package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.d.ts +18 -0
  29. package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.d.ts.map +1 -1
  30. package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.js +97 -13
  31. package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.js.map +1 -1
  32. package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts +4 -3
  33. package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts.map +1 -1
  34. package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js +7 -5
  35. package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js.map +1 -1
  36. package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts +6 -4
  37. package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts.map +1 -1
  38. package/dist/mcp-server/tools/definitions/search-articles.tool.js +33 -11
  39. package/dist/mcp-server/tools/definitions/search-articles.tool.js.map +1 -1
  40. package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts +2 -1
  41. package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts.map +1 -1
  42. package/dist/mcp-server/tools/definitions/spell-check.tool.js +5 -1
  43. package/dist/mcp-server/tools/definitions/spell-check.tool.js.map +1 -1
  44. package/dist/services/error-contracts.d.ts +1 -1
  45. package/dist/services/error-contracts.d.ts.map +1 -1
  46. package/dist/services/error-contracts.js +1 -1
  47. package/dist/services/error-contracts.js.map +1 -1
  48. package/dist/services/ncbi/formatting/citation-formatter.d.ts +24 -0
  49. package/dist/services/ncbi/formatting/citation-formatter.d.ts.map +1 -1
  50. package/dist/services/ncbi/formatting/citation-formatter.js +147 -46
  51. package/dist/services/ncbi/formatting/citation-formatter.js.map +1 -1
  52. package/dist/services/ncbi/ncbi-service.d.ts +16 -1
  53. package/dist/services/ncbi/ncbi-service.d.ts.map +1 -1
  54. package/dist/services/ncbi/ncbi-service.js +115 -70
  55. package/dist/services/ncbi/ncbi-service.js.map +1 -1
  56. package/dist/services/ncbi/parsing/article-parser.d.ts.map +1 -1
  57. package/dist/services/ncbi/parsing/article-parser.js +38 -29
  58. package/dist/services/ncbi/parsing/article-parser.js.map +1 -1
  59. package/dist/services/ncbi/parsing/esummary-parser.d.ts +9 -0
  60. package/dist/services/ncbi/parsing/esummary-parser.d.ts.map +1 -1
  61. package/dist/services/ncbi/parsing/esummary-parser.js +26 -2
  62. package/dist/services/ncbi/parsing/esummary-parser.js.map +1 -1
  63. package/dist/services/ncbi/parsing/pmc-article-parser.d.ts.map +1 -1
  64. package/dist/services/ncbi/parsing/pmc-article-parser.js +395 -147
  65. package/dist/services/ncbi/parsing/pmc-article-parser.js.map +1 -1
  66. package/dist/services/ncbi/parsing/pmc-xml-helpers.d.ts +73 -5
  67. package/dist/services/ncbi/parsing/pmc-xml-helpers.d.ts.map +1 -1
  68. package/dist/services/ncbi/parsing/pmc-xml-helpers.js +223 -27
  69. package/dist/services/ncbi/parsing/pmc-xml-helpers.js.map +1 -1
  70. package/dist/services/ncbi/parsing/text-helpers.d.ts +8 -6
  71. package/dist/services/ncbi/parsing/text-helpers.d.ts.map +1 -1
  72. package/dist/services/ncbi/parsing/text-helpers.js +95 -19
  73. package/dist/services/ncbi/parsing/text-helpers.js.map +1 -1
  74. package/dist/services/ncbi/response-handler.d.ts +20 -12
  75. package/dist/services/ncbi/response-handler.d.ts.map +1 -1
  76. package/dist/services/ncbi/response-handler.js +112 -19
  77. package/dist/services/ncbi/response-handler.js.map +1 -1
  78. package/dist/services/ncbi/types.d.ts +2 -2
  79. package/dist/services/openalex/openalex-service.d.ts +10 -6
  80. package/dist/services/openalex/openalex-service.d.ts.map +1 -1
  81. package/dist/services/openalex/openalex-service.js +13 -9
  82. package/dist/services/openalex/openalex-service.js.map +1 -1
  83. package/package.json +13 -11
  84. package/server.json +10 -24
package/dist/services/ncbi/parsing/esummary-parser.js.map CHANGED
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