@cyanheads/pubmed-mcp-server 2.10.19 → 2.10.20

package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.js

@@ -17,6 +17,7 @@ import { EUROPEPMC_SERVICE_ERRORS } from '../../../services/error-contracts.js';
 import { getEuropePmcService } from '../../../services/europe-pmc/europe-pmc-service.js';
 import { EUROPEPMC_ALL_SOURCES } from '../../../services/europe-pmc/types.js';
 import { toDisplayText } from '../../../services/ncbi/parsing/text-helpers.js';
+import { fitWholeItems } from './_budget.js';
 import { conceptMeta, EDAM_ACCESSION, EDAM_DATA_RETRIEVAL, SCHEMA_SCHOLARLY_ARTICLE, } from './_concepts.js';
 import { escapeMarkdownInline } from './_text.js';
 const SourceEnum = z.enum(EUROPEPMC_ALL_SOURCES);
@@ -78,9 +79,28 @@ const FetchedRecordSchema = z
     epmcUrl: z.string().describe('Europe PMC article URL'),
 })
     .describe('Complete Europe PMC record');
+const DeferredSchema = z
+    .object({
+    maxResponseCharacters: z
+        .number()
+        .describe('The `maxResponseCharacters` ceiling this response was budgeted against'),
+    returnedCharacters: z
+        .number()
+        .describe('Serialized characters the returned records account for'),
+    deferredCount: z
+        .number()
+        .describe('Records that resolved but were withheld to stay under the ceiling'),
+    records: z
+        .array(FetchedRecordSchema.pick({ source: true, epmcId: true }).describe('One deferred record, addressed by its own `source` + `epmcId`'))
+        .describe("The deferred records, in response order, each as the resolved record's own `source` + `epmcId` — a `PMC` request answered by its `MED` record is listed as that `MED` pair. Pass them back as `records` to retrieve them. Never contains a pair from `notFound`."),
+    nextDeferredCharacters: z
+        .number()
+        .describe('Serialized size of the next deferred record — the first entry in `records`, where the response stopped. Raise `maxResponseCharacters` to at least this to make progress; a smaller record further down `records` cannot be reached until this one fits.'),
+})
+    .describe('Continuation state for records the whole-response budget withheld. Present only when `maxResponseCharacters` deferred at least one record.');
 // ─── Tool Definition ─────────────────────────────────────────────────────────
 export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
-    description: "Fetch complete Europe PMC records — including the full, untruncated abstract — for records addressed by `source` plus `epmcId`. Pairs with `pubmed_europepmc_search`, which returns bounded `abstractSnippet` values and flags cut ones with `abstractTruncated: true`; pass those hits' `source` and `epmcId` here to read the whole abstract. This is the retrieval path for preprint (`PPR`), patent (`PAT`), and Agricola (`AGR`) records, which frequently carry no PMID and no DOI, so `pubmed_fetch_articles` and `pubmed_fetch_fulltext` cannot address them. Up to 25 records per call.",
+    description: "Fetch complete Europe PMC records — including the full, untruncated abstract — for records addressed by `source` plus `epmcId`. Pairs with `pubmed_europepmc_search`, which returns bounded `abstractSnippet` values and flags cut ones with `abstractTruncated: true`; pass those hits' `source` and `epmcId` here to read the whole abstract. This is the retrieval path for preprint (`PPR`), patent (`PAT`), and Agricola (`AGR`) records, which frequently carry no PMID and no DOI, so `pubmed_fetch_articles` and `pubmed_fetch_fulltext` cannot address them. Up to 25 records per call. Set `maxResponseCharacters` to bound the whole response: records past the ceiling are deferred whole and listed in `deferred.records` for a follow-up call.",
     annotations: { readOnlyHint: true, openWorldHint: true },
     _meta: conceptMeta([SCHEMA_SCHOLARLY_ARTICLE, EDAM_DATA_RETRIEVAL, EDAM_ACCESSION]),
     sourceUrl: 'https://github.com/cyanheads/pubmed-mcp-server/blob/main/src/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.ts',
@@ -99,23 +119,36 @@ export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
             .min(1)
             .max(25)
             .describe('Records to retrieve, each addressed by the `source` and `epmcId` of a `pubmed_europepmc_search` hit. The whole batch resolves in one Europe PMC request.'),
+        maxResponseCharacters: z
+            .number()
+            .int()
+            .min(1)
+            .max(1_000_000)
+            .optional()
+            .describe('Opt-in ceiling for the whole response, in characters. Each record is measured as the JSON record it is returned as — title, authors, journal, abstract, identifiers, every field it carries. Records are kept in the order Europe PMC returned them until the next one would cross the ceiling; that record and the rest are deferred whole (never partially populated) and listed in `deferred.records`. Response envelope fields — `notFound`, `deferred` itself — are not counted. Omit to return every resolved record.'),
     }),
     output: z.object({
         records: z
             .array(FetchedRecordSchema)
-            .describe('Resolved records, in the order Europe PMC returned them'),
+            .describe('Resolved records, in the order Europe PMC returned them. Under a `maxResponseCharacters` budget, only the leading records that fit; `deferred.records` lists the rest.'),
         notFound: z
             .array(RecordRefSchema)
             .optional()
-            .describe('Requested `source` + `epmcId` pairs Europe PMC returned no record for'),
+            .describe('Requested `source` + `epmcId` pairs Europe PMC returned no record for. Reported in full regardless of where a `maxResponseCharacters` cut lands — these are misses, not deferrals.'),
+        deferred: DeferredSchema.optional(),
     }),
-    // Recovery guidance when some or all requested pairs resolve to nothing —
-    // agent-facing context, surfaced to structuredContent and content[] alike.
+    // Recovery guidance when some or all requested pairs resolve to nothing, and
+    // when the whole-response budget deferred records — agent-facing context,
+    // surfaced to structuredContent and content[] alike.
     enrichment: {
         notice: z
             .string()
             .optional()
-            .describe('Guidance when one or more requested records could not be resolved. Absent when every record came back.'),
+            .describe('Guidance when one or more requested records could not be resolved, or when `maxResponseCharacters` deferred records — naming how to retrieve them. Absent when every requested record came back.'),
+        truncated: z
+            .boolean()
+            .optional()
+            .describe('True when `maxResponseCharacters` withheld at least one resolved record. Absent when the response carries every record that resolved. The continuation state is in `deferred`.'),
     },
     async handler(input, ctx) {
         ctx.log.info('Executing pubmed_europepmc_fetch', { recordCount: input.records.length });
@@ -124,7 +157,7 @@ export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
             throw ctx.fail('europepmc_disabled', 'Europe PMC service is not available. Set EUROPEPMC_ENABLED=true to use this tool.');
         }
         const hits = await epmc.fetchRecords(input.records, ctx.signal);
-        const records = hits.map((h) => {
+        const resolvedRecords = hits.map((h) => {
             // EPMC returns these as raw JSON strings carrying JATS/HTML markup,
             // un-decoded entities, and soft hyphens (no XML parser runs on them).
             // Title is the confirmed live vector — preprints carry italicized species
@@ -159,7 +192,7 @@ export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
         // missing over a casing difference.
         const refKey = (source, id) => `${source}:${id.toUpperCase()}`;
         const resolved = new Set();
-        for (const r of records) {
+        for (const r of resolvedRecords) {
             resolved.add(refKey(r.source, r.epmcId));
             // A `PMC` request for a PubMed-indexed article resolves to that article's
             // canonical `MED` record, which reports the requested PMCID in `pmcId`
@@ -168,33 +201,68 @@ export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
             if (r.pmcId)
                 resolved.add(refKey('PMC', r.pmcId));
         }
+        // Diffed against every resolved record, before the budget cut below, so a
+        // deferred record is never also reported missing.
         const notFound = input.records.filter((ref) => !resolved.has(refKey(ref.source, ref.epmcId)));
+        // Whole-response budget: fill with complete records in response order and
+        // hand the rest back as pairs the caller can re-submit. Without
+        // `maxResponseCharacters` nothing is measured and the response is exactly
+        // what it was before the budget existed. (#188)
+        const ceiling = input.maxResponseCharacters;
+        const fit = ceiling === undefined ? undefined : fitWholeItems(resolvedRecords, ceiling);
+        const records = fit?.kept ?? resolvedRecords;
+        const deferred = ceiling !== undefined && fit?.nextDeferredCharacters !== undefined
+            ? {
+                maxResponseCharacters: ceiling,
+                returnedCharacters: fit.keptCharacters,
+                deferredCount: fit.deferred.length,
+                records: fit.deferred.map((r) => ({ source: r.source, epmcId: r.epmcId })),
+                nextDeferredCharacters: fit.nextDeferredCharacters,
+            }
+            : undefined;
         ctx.log.info('pubmed_europepmc_fetch completed', {
             requested: input.records.length,
             returned: records.length,
+            ...(deferred && { deferred: deferred.deferredCount }),
         });
         // An unresolved id shaped like a PMCID is reachable by another route:
         // pubmed_fetch_fulltext addresses PMCIDs directly, with no `source` pair.
         const pmcidHint = notFound.some((r) => PMCID_SHAPED_RE.test(r.epmcId))
             ? ' An id shaped like a PMCID also resolves through pubmed_fetch_fulltext, whose `pmcids` input takes it on its own.'
             : '';
-        if (records.length === 0) {
-            ctx.enrich.notice(`Europe PMC returned no record for any requested pair. Both fields must be copied verbatim from a pubmed_europepmc_search hit — \`epmcId\` is Europe PMC's own id (the PMID only for \`source: "MED"\`), and it must be paired with the same hit's \`source\`.${pmcidHint}`);
+        // Only the last ctx.enrich.notice survives, so the applicable guidance is
+        // collected and emitted once. The empty-batch case keys on what resolved,
+        // not on what the budget kept: a batch emptied by a small ceiling is a
+        // budget outcome, not a batch of unknown pairs.
+        const notices = [];
+        if (resolvedRecords.length === 0) {
+            notices.push(`Europe PMC returned no record for any requested pair. Both fields must be copied verbatim from a pubmed_europepmc_search hit — \`epmcId\` is Europe PMC's own id (the PMID only for \`source: "MED"\`), and it must be paired with the same hit's \`source\`.${pmcidHint}`);
         }
         else if (notFound.length > 0) {
-            ctx.enrich.notice(`Europe PMC returned no record for ${notFound.length} of ${input.records.length} requested pairs: ${notFound
-                .map((r) => `${r.source}/${r.epmcId}`)
+            notices.push(`Europe PMC returned no record for ${notFound.length} of ${input.records.length} requested pairs: ${notFound
+                .map(formatPair)
                 .join(', ')}. Verify each against its pubmed_europepmc_search hit — a mismatched \`source\` is the usual cause.${pmcidHint}`);
         }
+        if (deferred) {
+            ctx.enrich({ truncated: true });
+            notices.push(buildDeferralNotice(deferred));
+        }
+        if (notices.length > 0)
+            ctx.enrich.notice(notices.join(' '));
         return {
             records,
             ...(notFound.length > 0 && { notFound }),
+            ...(deferred && { deferred }),
         };
     },
     format: (result) => {
         const lines = ['## Europe PMC Records', `**Returned:** ${result.records.length}`];
         if (result.notFound?.length) {
-            lines.push(`**Not found:** ${result.notFound.map((r) => `${r.source}/${r.epmcId}`).join(', ')}`);
+            lines.push(`**Not found:** ${result.notFound.map(formatPair).join(', ')}`);
+        }
+        if (result.deferred) {
+            const d = result.deferred;
+            lines.push(`**Deferred by the response budget:** ${d.deferredCount} record(s) — ${d.returnedCharacters} of ${d.maxResponseCharacters} budgeted characters returned; next deferred record ${d.nextDeferredCharacters} characters`, `Re-call \`pubmed_europepmc_fetch\` with these as \`records\` (\`source\`/\`epmcId\`): ${d.records.map(formatPair).join(', ')}`);
         }
         for (const r of result.records) {
             // Escaping is render-time only — the structuredContent values above stay
@@ -230,4 +298,20 @@ export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
         return [{ type: 'text', text: lines.join('\n') }];
     },
 });
+/** A record address as the notices and `content[]` render it: `SOURCE/epmcId`. */
+function formatPair(pair) {
+    return `${pair.source}/${pair.epmcId}`;
+}
+/**
+ * Compose the recovery notice for a response the whole-response budget bounded.
+ * Names what was spent, which pairs are still retrievable, and the ceiling the
+ * next call has to clear — so a caller reading only `content[]` can resume
+ * without inspecting `deferred`. (#188)
+ */
+function buildDeferralNotice(deferred) {
+    const spent = deferred.returnedCharacters === 0
+        ? `The first record alone exceeds the requested maxResponseCharacters of ${deferred.maxResponseCharacters}, so none were returned.`
+        : `Response character budget reached: ${deferred.returnedCharacters} of ${deferred.maxResponseCharacters} characters returned.`;
+    return `${spent} ${deferred.deferredCount} resolved record(s) were deferred whole: ${deferred.records.map(formatPair).join(', ')}. Re-call pubmed_europepmc_fetch with those pairs as \`records\` to retrieve them, or raise maxResponseCharacters to at least ${deferred.nextDeferredCharacters} — the size of the next deferred record.`;
+}
 //# sourceMappingURL=pubmed-europepmc-fetch.tool.js.map

package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.js.map

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package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts

@@ -3,9 +3,10 @@
  * can't reach: preprints (source `PPR`), Agricola (`AGR`), patents (`PAT`),
  * and EPMC-only OA articles. Uses EPMC's cursor-based pagination
  * (`cursorMark`) — unlike `pubmed_search_articles`'s offset-based paging,
- * because EPMC's search API doesn't support offset. `max_results` and `limit`
- * are accepted as aliases for `pageSize`. A `query` with no search term (`()`,
- * `<b></b>`) or a blank `cursorMark` is rejected before Europe PMC is called.
+ * because EPMC's search API doesn't support offset. `max_results`, `limit`, and
+ * `maxResults` are accepted as aliases for `pageSize`. A `query` with no search
+ * term (`()`, `<b></b>`) or a blank `cursorMark` is rejected before Europe PMC
+ * is called.
  * The total hit count rides in `output` so `format()` can state it in the
  * header, and `searchUrl` opens the source-filtered query Europe PMC actually
  * ran.

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pubmed-europepmc-search.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAgCjE,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAYxB,cAAc;;mBAEhB,gLAAgL;uBAEpL,gIAAgI;;;qBAI1H,oBAAoB;;mBAEtB,6DAA6D;uBACzD,mFAAmF;;;;;;;;;;;EA+TjG,CAAC"}
+{"version":3,"file":"pubmed-europepmc-search.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAgCjE,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAYxB,cAAc;;mBAEhB,gLAAgL;uBAEpL,gIAAgI;;;qBAI1H,oBAAoB;;mBAEtB,6DAA6D;uBACzD,mFAAmF;;;;;;;;;;;EAgUjG,CAAC"}

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js

@@ -3,9 +3,10 @@
  * can't reach: preprints (source `PPR`), Agricola (`AGR`), patents (`PAT`),
  * and EPMC-only OA articles. Uses EPMC's cursor-based pagination
  * (`cursorMark`) — unlike `pubmed_search_articles`'s offset-based paging,
- * because EPMC's search API doesn't support offset. `max_results` and `limit`
- * are accepted as aliases for `pageSize`. A `query` with no search term (`()`,
- * `<b></b>`) or a blank `cursorMark` is rejected before Europe PMC is called.
+ * because EPMC's search API doesn't support offset. `max_results`, `limit`, and
+ * `maxResults` are accepted as aliases for `pageSize`. A `query` with no search
+ * term (`()`, `<b></b>`) or a blank `cursorMark` is rejected before Europe PMC
+ * is called.
  * The total hit count rides in `output` so `format()` can state it in the
  * header, and `searchUrl` opens the source-filtered query Europe PMC actually
  * ran.
@@ -59,8 +60,9 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
         },
     ],
     // Never advertised; rewritten to the canonical key before the schema parses.
-    // `pageSize` is this tool's only count parameter, so both map to it. (#156)
-    inputAliases: { max_results: 'pageSize', limit: 'pageSize' },
+    // `pageSize` is this tool's only count parameter, so every sibling tool's count
+    // name maps to it. (#156, #190)
+    inputAliases: { max_results: 'pageSize', limit: 'pageSize', maxResults: 'pageSize' },
     input: z.object({
         query: z
             .string()

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js.map

@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts

@@ -5,10 +5,12 @@
  * bare field tag, or empty parentheses — is rejected before NCBI is called, as
  * is a filter value with no term once sanitized (`"   "`, `"()"`), a
  * `dateRange` bound that is no real calendar date, and a range whose `minDate`
- * falls after its `maxDate`. `limit` is accepted as an alias for `maxResults`.
- * The total match count rides in `output` so `format()` can state it in the
- * header beside the returned count, and a summary's `docType` is rendered only
- * when it marks something other than an ordinary journal article (`citation`).
+ * falls after its `maxDate`. `limit`, `retmax`, `num_results`, and `pageSize`
+ * are accepted as aliases for `maxResults`, `term` and `queryTerm` for `query`,
+ * `retstart` for `offset`, and `sortBy` for `sort`. The total match count rides
+ * in `output` so `format()` can state it in the header beside the returned
+ * count, and a summary's `docType` is rendered only when it marks something
+ * other than an ordinary journal article (`citation`).
  * @module src/mcp-server/tools/definitions/search-articles.tool
  */
 import { z } from '@cyanheads/mcp-ts-core';

package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"search-articles.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-articles.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAiUjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAYjB,oBAAoB;;mBAEtB,2RAA2R;uBAE/R,oJAAoJ;;;qBAI9I,cAAc;;mBAEhB,mZAAmZ;uBAEvZ,gIAAgI;;;;;;;;;;;;;;;;;;;;;;;;;;;EA6dtI,CAAC"}

package/dist/mcp-server/tools/definitions/search-articles.tool.js

@@ -5,10 +5,12 @@
  * bare field tag, or empty parentheses — is rejected before NCBI is called, as
  * is a filter value with no term once sanitized (`"   "`, `"()"`), a
  * `dateRange` bound that is no real calendar date, and a range whose `minDate`
- * falls after its `maxDate`. `limit` is accepted as an alias for `maxResults`.
- * The total match count rides in `output` so `format()` can state it in the
- * header beside the returned count, and a summary's `docType` is rendered only
- * when it marks something other than an ordinary journal article (`citation`).
+ * falls after its `maxDate`. `limit`, `retmax`, `num_results`, and `pageSize`
+ * are accepted as aliases for `maxResults`, `term` and `queryTerm` for `query`,
+ * `retstart` for `offset`, and `sortBy` for `sort`. The total match count rides
+ * in `output` so `format()` can state it in the header beside the returned
+ * count, and a summary's `docType` is rendered only when it marks something
+ * other than an ordinary journal article (`citation`).
  * @module src/mcp-server/tools/definitions/search-articles.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
@@ -215,7 +217,7 @@ function buildNotice(args) {
     const notices = [];
     if (partialDateBound) {
         const missing = partialDateBound.name === 'minDate' ? 'maxDate' : 'minDate';
-        const sentinel = missing === 'maxDate' ? '3000' : '1800';
+        const sentinel = missing === 'maxDate' ? '3000' : '1000';
         notices.push(`No date filter was applied: dateRange needs both bounds and only \`${partialDateBound.name}\` ("${partialDateBound.value}") was supplied. Set \`${missing}\` as well — for an open-ended range pass a wide sentinel (e.g. \`${missing}: "${sentinel}"\`).`);
     }
     const ignoredFields = [
@@ -301,14 +303,31 @@ export const searchArticlesTool = tool('pubmed_search_articles', {
         },
     ],
     // Never advertised; rewritten to the canonical key before the schema parses.
-    // `max_results` needs no entry — the framework's case-style repair maps it. (#156)
-    inputAliases: { limit: 'maxResults' },
+    // ESearch's own names (`retmax`, `term`, `retstart`), sibling tools' names, and
+    // common caller spellings. `max_results` needs no entry — the framework's
+    // case-style repair maps it. (#156, #190)
+    inputAliases: {
+        limit: 'maxResults',
+        retmax: 'maxResults',
+        num_results: 'maxResults',
+        pageSize: 'maxResults',
+        term: 'query',
+        queryTerm: 'query',
+        retstart: 'offset',
+        sortBy: 'sort',
+    },
     input: z.object({
         query: z
             .string()
             .min(1)
             .describe('PubMed search query (supports full NCBI syntax). Must carry a search term: a value that is blank once markup, bracketed field tags (`[pdat]`), parentheses, and invisible characters such as a zero-width space are disregarded is rejected rather than sent to PubMed.'),
-        maxResults: z.number().int().min(1).max(1000).default(20).describe('Maximum results to return'),
+        maxResults: z
+            .number()
+            .int()
+            .min(0)
+            .max(1000)
+            .default(20)
+            .describe('Maximum results to return. 0 returns only `totalCount`.'),
         offset: z
             .number()
             .int()
@@ -325,11 +344,11 @@ export const searchArticlesTool = tool('pubmed_search_articles', {
             minDate: z
                 .string()
                 .regex(DATE_RE, 'Date must be YYYY, YYYY/MM, or YYYY/MM/DD (/, -, or . separators)')
-                .describe('Start date (YYYY/MM/DD, YYYY/MM, or YYYY); empty string disables this bound. Must be a real calendar date — `2023/02/29` is rejected.'),
+                .describe('Start date (YYYY/MM/DD, YYYY/MM, or YYYY). Must be a real calendar date — `2023/02/29` is rejected. Leaving it empty drops the whole date range, not just this bound; for no lower bound pass a wide sentinel such as `1000`.'),
             maxDate: z
                 .string()
                 .regex(DATE_RE, 'Date must be YYYY, YYYY/MM, or YYYY/MM/DD (/, -, or . separators)')
-                .describe('End date (YYYY/MM/DD, YYYY/MM, or YYYY); empty string disables this bound. Must be a real calendar date — `2023/02/29` is rejected.'),
+                .describe('End date (YYYY/MM/DD, YYYY/MM, or YYYY). Must be a real calendar date — `2023/02/29` is rejected. Leaving it empty drops the whole date range, not just this bound; for no upper bound pass a wide sentinel such as `3000`.'),
             dateType: z
                 .enum(['pdat', 'mdat', 'edat'])
                 .default('pdat')
@@ -401,7 +420,10 @@ export const searchArticlesTool = tool('pubmed_search_articles', {
                 .array(z.string().describe('One editor, "Surname Initials" as ESummary renders it'))
                 .optional()
                 .describe("Editors of the containing book, kept out of `authors` so they cannot displace the record's own authors. Absent on a journal article and on a book that credits no editors."),
-            pubDate: z.string().optional().describe('Publication date'),
+            pubDate: z
+                .string()
+                .optional()
+                .describe('Publication date as YYYY-MM-DD; a month- or year-only date reads as the first day of that month or year. On an NCBI Bookshelf chapter (`docType` "chapter") it is the chapter\'s own date — its last revision, otherwise its contribution — not the year its book began.'),
             doi: z
                 .string()
                 .optional()

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package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts

@@ -1,7 +1,8 @@
 /**
  * @fileoverview PubMed spell-check tool. Uses NCBI's ESpell service to correct
  * every misspelled token of a PubMed search query in one call — the recovery
- * step after a zero-hit or thin `pubmed_search_articles` result.
+ * step after a zero-hit or thin `pubmed_search_articles` result. `term` is
+ * accepted as an alias for `query`.
  * @module src/mcp-server/tools/definitions/spell-check.tool
  */
 import { z } from '@cyanheads/mcp-ts-core';

package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"spell-check.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/spell-check.tool.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAMjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cA8DzB,CAAC"}
+{"version":3,"file":"spell-check.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/spell-check.tool.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAMjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAkEzB,CAAC"}

package/dist/mcp-server/tools/definitions/spell-check.tool.js

@@ -1,7 +1,8 @@
 /**
  * @fileoverview PubMed spell-check tool. Uses NCBI's ESpell service to correct
  * every misspelled token of a PubMed search query in one call — the recovery
- * step after a zero-hit or thin `pubmed_search_articles` result.
+ * step after a zero-hit or thin `pubmed_search_articles` result. `term` is
+ * accepted as an alias for `query`.
  * @module src/mcp-server/tools/definitions/spell-check.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
@@ -15,6 +16,9 @@ export const spellCheckTool = tool('pubmed_spell_check', {
     _meta: conceptMeta([SCHEMA_SEARCH_ACTION]),
     sourceUrl: 'https://github.com/cyanheads/pubmed-mcp-server/blob/main/src/mcp-server/tools/definitions/spell-check.tool.ts',
     errors: [...NCBI_SERVICE_ERRORS, ...QUERY_INPUT_ERRORS],
+    // Never advertised; rewritten to the canonical key before the schema parses.
+    // ESpell's own name for the query. (#190)
+    inputAliases: { term: 'query' },
     input: z.object({
         query: z
             .string()