@cyanheads/pubmed-mcp-server 2.10.17 → 2.10.19

package/dist/services/europe-pmc/europe-pmc-service.d.ts

@@ -7,9 +7,17 @@
  * from the same `ORDERED_XML_PARSER_OPTIONS` NCBI's ordered parser uses, so
  * `parsePmcArticle` consumes the result without modification.
  *
+ * Every call runs as a retry loop around the shared request queue: each attempt
+ * re-enters the queue and waits out its start gap, and a backoff sleep holds no
+ * concurrency slot, so callers backing off never stall the calls behind them.
+ *
  * A search's retry boundary covers fetch and response classification, so
  * Europe PMC's intermittent empty `{ version }` envelope is retried like an
  * HTTP outage; only a sort or cursor that explains it is reported as bad input.
+ * Europe PMC answers an unreadable cursor with the HTTP 503 it uses for an
+ * outage, so a 503 on a caller-supplied cursor is checked against the first
+ * page of the same query, and the cursor is blamed only when a retry draws
+ * the 503 again while that first page was served.
  * A search reports the effective query Europe PMC echoes back, or — with no
  * echo — the source-filtered query it sent.
  *
@@ -19,9 +27,9 @@
  *
  * @module src/services/europe-pmc/europe-pmc-service
  */
+import { type Pacer } from '@cyanheads/mcp-ts-core/utils';
 import type { JatsNode } from '../ncbi/parsing/pmc-xml-helpers.js';
 import { EuropePmcApiClient } from './api-client.js';
-import { EuropePmcRequestQueue } from './request-queue.js';
 import type { EuropePmcFullTextResult, EuropePmcRecordRef, EuropePmcRelatedResult, EuropePmcSearchHit, EuropePmcSearchParams, EuropePmcSearchResult, EuropePmcSource } from './types.js';
 /**
  * Facade over the Europe PMC REST API:
@@ -31,14 +39,15 @@ import type { EuropePmcFullTextResult, EuropePmcRecordRef, EuropePmcRelatedResul
  *   - `citations()` / `references()` — EPMC's link graph for a PubMed article.
  *
  * All honor `ctx.signal` for cancellation and retry transient failures with
- * capped exponential backoff plus jitter.
+ * capped exponential backoff plus jitter, each attempt paced through the shared
+ * request queue.
  */
 export declare class EuropePmcService {
     private readonly client;
     private readonly queue;
     private readonly maxRetries;
     private readonly orderedXmlParser;
-    constructor(client: EuropePmcApiClient, queue: EuropePmcRequestQueue, maxRetries: number);
+    constructor(client: EuropePmcApiClient, queue: Pacer, maxRetries: number);
     /**
      * Search Europe PMC. Cursor-based pagination — pass `cursorMark: '*'` (or
      * omit) for the first page; pass the returned `nextCursorMark` for the next.
@@ -46,12 +55,26 @@ export declare class EuropePmcService {
      * The retry boundary covers the fetch and the response classification
      * together, so an empty envelope retries like any other transient failure
      * rather than surfacing after the loop has already returned. (#159)
+     *
+     * The first HTTP 503 on a caller-supplied cursor draws one probe of the same
+     * query's first page, and the cursor is retried either way: one 503 is not
+     * enough to tell a bad cursor from a transient outage. A later 503 fails the
+     * search at once as non-retryable input only when that probe was served;
+     * otherwise it goes on through the ordinary retry path. A 503 with no retry
+     * left is never probed, since nothing could use the answer. (#180)
      */
     search(params: EuropePmcSearchParams): Promise<EuropePmcSearchResult>;
+    /**
+     * Whether Europe PMC serves the first page of the search in `params`: one
+     * request (`cursorMark: '*'`, `pageSize: 1`), paced like any other, with no
+     * retries of its own. Any failure reads as not served — except the caller's
+     * cancellation, which propagates.
+     */
+    private firstPageServed;
     /**
      * One search attempt: fetch, parse, and classify the body. `isLastAttempt`
-     * lets an empty envelope that has persisted through the whole retry budget
-     * be attributed to a caller-supplied cursor.
+     * lets an empty envelope on the last attempt the retry budget allows be
+     * attributed to a caller-supplied cursor.
      */
     private searchOnce;
     /**
@@ -117,16 +140,22 @@ export declare class EuropePmcService {
      */
     parseFullTextXml(xml: string): JatsNode | undefined;
     /**
-     * Retry wrapper for transient errors. Mirrors NCBI's `withRetry` minus the
-     * service-level deadline — EPMC requests are cheaper individually and the
-     * caller (typically `ctx.signal`) bounds the total chain. `execute` receives
-     * the zero-based attempt index. On exhaustion the last error keeps its code
-     * and an upstream `retryAfter`, so a 429 still tells the caller how long to
-     * wait. Only a `ServiceUnavailable` gains `europepmc_unreachable` and its hint;
-     * a `Timeout` or `RateLimited` keeps its code with no reason, as the NCBI
-     * service reports them.
+     * Runs one Europe PMC call: a retry loop around the shared request queue, so
+     * every attempt re-queues and is re-paced, and a backoff sleep holds no queue
+     * slot. No service-level deadline — Europe PMC requests are cheap individually
+     * and the caller's signal (typically `ctx.signal`) bounds the total chain; that
+     * signal reaches the queue wait and the backoff sleep. `execute` receives the
+     * one-based attempt number.
+     *
+     * `reclassify`, when given, sees each failed attempt after its queue slot is
+     * released and before the retry decision, with the attempt's signal and its
+     * one-based number. The error it returns is the one the loop judges, so it
+     * can end the retries by returning a non-transient error.
+     *
+     * A caller abort rethrows the caller's own reason; an exhausted failure is
+     * reshaped by {@link toServiceError}, after the loop.
      */
-    private withRetry;
+    private runPaced;
 }
 /**
  * Initialize the Europe PMC service when enabled. Safe to call regardless of

package/dist/services/europe-pmc/europe-pmc-service.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"europe-pmc-service.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/europe-pmc-service.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;AASH,OAAO,EAGL,KAAK,KAAK,EAGX,MAAM,8BAA8B,CAAC;AAMtC,OAAO,KAAK,EAAE,QAAQ,EAAgB,MAAM,4CAA4C,CAAC;AAEzF,OAAO,EAAoB,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AAEvE,OAAO,KAAK,EACV,uBAAuB,EAEvB,kBAAkB,EAElB,sBAAsB,EACtB,kBAAkB,EAClB,qBAAqB,EAErB,qBAAqB,EACrB,eAAe,EAChB,MAAM,YAAY,CAAC;AAsGpB;;;;;;;;;;GAUG;AACH,qBAAa,gBAAgB;IAIzB,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,KAAK;IACtB,OAAO,CAAC,QAAQ,CAAC,UAAU;IAL7B,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAY;IAE7C,YACmB,MAAM,EAAE,kBAAkB,EAC1B,KAAK,EAAE,KAAK,EACZ,UAAU,EAAE,MAAM,EAQpC;IAED;;;;;;;;;;;;;;OAcG;IACH,MAAM,CAAC,MAAM,EAAE,qBAAqB,GAAG,OAAO,CAAC,qBAAqB,CAAC,CA+BpE;IAED;;;;;OAKG;YACW,eAAe;IAgB7B;;;;OAIG;YACW,UAAU;IAyHxB;;;;;;;;;;OAUG;IACG,YAAY,CAChB,IAAI,EAAE,SAAS,kBAAkB,EAAE,EACnC,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,kBAAkB,EAAE,CAAC,CAQ/B;IAED;;;;;;;OAOG;IACG,WAAW,CACf,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,eAAe,EACvB,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,uBAAuB,CAAC,CASlC;IAED;;;;;;;;;;OAUG;IACH,SAAS,CACP,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,EACZ,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,sBAAsB,CAAC,CAQjC;IAED;;;;;;;;;;OAUG;IACH,UAAU,CACR,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,EACZ,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,sBAAsB,CAAC,CAQjC;IAED;;;;;OAKG;YACW,iBAAiB;IAkE/B;;;;;;;;OAQG;IACH,gBAAgB,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,GAAG,SAAS,CA4BlD;IAED;;;;;;;;;;;;;;;OAeG;YACW,QAAQ;CA8CvB;AAMD;;;;GAIG;AACH,wBAAgB,oBAAoB,IAAI,IAAI,CAyB3C;AAED,6EAA6E;AAC7E,wBAAgB,mBAAmB,IAAI,gBAAgB,GAAG,SAAS,CAElE"}

package/dist/services/europe-pmc/europe-pmc-service.js

@@ -7,9 +7,17 @@
  * from the same `ORDERED_XML_PARSER_OPTIONS` NCBI's ordered parser uses, so
  * `parsePmcArticle` consumes the result without modification.
  *
+ * Every call runs as a retry loop around the shared request queue: each attempt
+ * re-enters the queue and waits out its start gap, and a backoff sleep holds no
+ * concurrency slot, so callers backing off never stall the calls behind them.
+ *
  * A search's retry boundary covers fetch and response classification, so
  * Europe PMC's intermittent empty `{ version }` envelope is retried like an
  * HTTP outage; only a sort or cursor that explains it is reported as bad input.
+ * Europe PMC answers an unreadable cursor with the HTTP 503 it uses for an
+ * outage, so a 503 on a caller-supplied cursor is checked against the first
+ * page of the same query, and the cursor is blamed only when a retry draws
+ * the 503 again while that first page was served.
  * A search reports the effective query Europe PMC echoes back, or — with no
  * echo — the source-filtered query it sent.
  *
@@ -19,33 +27,45 @@
  *
  * @module src/services/europe-pmc/europe-pmc-service
  */
-import { internalError, JsonRpcErrorCode, McpError, serializationError, serviceUnavailable, validationError, } from '@cyanheads/mcp-ts-core/errors';
-import { defaultIsTransient, logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
+import { JsonRpcErrorCode, McpError, serializationError, serviceUnavailable, validationError, } from '@cyanheads/mcp-ts-core/errors';
+import { defaultIsTransient, logger, requestContextService, withRetry, } from '@cyanheads/mcp-ts-core/utils';
 // biome-ignore lint/suspicious/noDeprecatedImports: staying on in-tree XMLValidator — see ncbi/response-handler.ts
 import { XMLParser, XMLValidator } from 'fast-xml-parser';
 import { getServerConfig } from '../../config/server-config.js';
-import { recoveryFor } from '../error-contracts.js';
 import { ORDERED_XML_PARSER_OPTIONS } from '../ncbi/parsing/ordered-xml-parser-options.js';
 import { ensureArray } from '../ncbi/parsing/xml-helpers.js';
 import { buildSearchQuery, EuropePmcApiClient } from './api-client.js';
-import { EuropePmcRequestQueue } from './request-queue.js';
+import { createEuropePmcRequestQueue } from './request-queue.js';
+/** Ceiling on one backoff sleep, so a high retry count cannot grow it without bound. */
 const MAX_BACKOFF_MS = 30_000;
-function abortableSleep(ms, signal) {
-    if (!signal)
-        return new Promise((r) => setTimeout(r, ms));
-    if (signal.aborted)
-        return Promise.reject(signal.reason);
-    return new Promise((resolve, reject) => {
-        const onAbort = () => {
-            clearTimeout(timer);
-            reject(signal.reason);
-        };
-        const timer = setTimeout(() => {
-            signal.removeEventListener('abort', onAbort);
-            resolve();
-        }, ms);
-        signal.addEventListener('abort', onAbort, { once: true });
-    });
+/**
+ * Retry gate: the framework's transient set, narrowed to `McpError`s. The client
+ * classifies every upstream failure, so a plain `Error` reaching the loop is a defect
+ * or a response that cannot parse — retrying it only repeats it.
+ */
+const isTransient = (error) => error instanceof McpError && defaultIsTransient(error);
+/**
+ * Reshapes an error whose retries ran out: the last attempt's code and message with
+ * the attempt count appended, `label`, `attempts`, and the upstream `retryAfter`, so a
+ * 429 still tells the caller how long to wait. Only a `ServiceUnavailable` gains
+ * `europepmc_unreachable`; a `Timeout` or `RateLimited` keeps its code with no
+ * reason, as the OpenAlex service reports them. Anything never retried — a
+ * non-transient failure, or a `Retry-After` longer than the backoff cap — passes
+ * through unchanged.
+ */
+function toServiceError(error, label) {
+    if (!(error instanceof McpError) || typeof error.data?.retryAttempts !== 'number')
+        return error;
+    const last = error.cause instanceof McpError ? error.cause : error;
+    const attempts = error.data.retryAttempts;
+    return new McpError(error.code, `${last.message} (failed after ${attempts} attempt${attempts === 1 ? '' : 's'})`, {
+        ...(error.code === JsonRpcErrorCode.ServiceUnavailable && {
+            reason: 'europepmc_unreachable',
+        }),
+        label,
+        attempts,
+        ...(last.data?.retryAfter !== undefined && { retryAfter: last.data.retryAfter }),
+    }, { cause: last });
 }
 /**
  * Europe PMC lookup clause for one record addressed by `source` + EPMC id.
@@ -69,6 +89,15 @@ function recordLookupQuery({ epmcId, source }) {
     const extIdClause = `(EXT_ID:${epmcId} AND SRC:${source})`;
     return source === 'PMC' ? `${extIdClause} OR (PMCID:${epmcId})` : extIdClause;
 }
+/**
+ * The caller's cursor when it asks for a page past the first. `*` and an
+ * exactly-empty cursor both read as the first page upstream.
+ */
+function callerCursor({ cursorMark }) {
+    return cursorMark && cursorMark !== '*' ? cursorMark : undefined;
+}
+/** Next step for a cursor Europe PMC cannot read, whichever way it signals that. */
+const CURSOR_RECOVERY_HINT = "Pass the previous response's `nextCursorMark` verbatim as `cursorMark`, or `*` to restart from the first page.";
 /** The sort fields Europe PMC documents. */
 const DOCUMENTED_SORT_FIELDS = new Set(['P_PDATE_D', 'CITED', 'AUTH_FIRST', 'PUB_YEAR']);
 /**
@@ -99,7 +128,8 @@ function sortExplainsEnvelope(sort) {
  *   - `citations()` / `references()` — EPMC's link graph for a PubMed article.
  *
  * All honor `ctx.signal` for cancellation and retry transient failures with
- * capped exponential backoff plus jitter.
+ * capped exponential backoff plus jitter, each attempt paced through the shared
+ * request queue.
  */
 export class EuropePmcService {
     client;
@@ -124,14 +154,60 @@ export class EuropePmcService {
      * The retry boundary covers the fetch and the response classification
      * together, so an empty envelope retries like any other transient failure
      * rather than surfacing after the loop has already returned. (#159)
+     *
+     * The first HTTP 503 on a caller-supplied cursor draws one probe of the same
+     * query's first page, and the cursor is retried either way: one 503 is not
+     * enough to tell a bad cursor from a transient outage. A later 503 fails the
+     * search at once as non-retryable input only when that probe was served;
+     * otherwise it goes on through the ordinary retry path. A 503 with no retry
+     * left is never probed, since nothing could use the answer. (#180)
      */
     search(params) {
-        return this.queue.enqueue(() => this.withRetry((attempt) => this.searchOnce(params, attempt === this.maxRetries), 'search', params.signal), 'search', params.signal);
+        const cursorMark = callerCursor(params);
+        let firstPage = 'unknown';
+        return this.runPaced('search', params.signal, (attempt) => this.searchOnce(params, attempt === this.maxRetries + 1), cursorMark === undefined
+            ? undefined
+            : async (error, signal, attempt) => {
+                if (!(error instanceof McpError) || error.data?.status !== 503)
+                    return error;
+                if (firstPage === 'unknown') {
+                    if (attempt <= this.maxRetries) {
+                        firstPage = (await this.firstPageServed(params, signal)) ? 'served' : 'failed';
+                    }
+                    return error;
+                }
+                if (firstPage === 'failed')
+                    return error;
+                return validationError(`Europe PMC answered cursorMark "${cursorMark}" with HTTP 503 twice but served the first page of the same query — the cursor is most likely invalid or expired.`, {
+                    reason: 'europepmc_invalid_input',
+                    cursorMark,
+                    status: 503,
+                    retryable: false,
+                    recovery: { hint: CURSOR_RECOVERY_HINT },
+                }, { cause: error });
+            });
+    }
+    /**
+     * Whether Europe PMC serves the first page of the search in `params`: one
+     * request (`cursorMark: '*'`, `pageSize: 1`), paced like any other, with no
+     * retries of its own. Any failure reads as not served — except the caller's
+     * cancellation, which propagates.
+     */
+    async firstPageServed(params, signal) {
+        try {
+            await this.queue.run(() => this.searchOnce({ ...params, cursorMark: '*', pageSize: 1, signal }, false), { signal });
+            return true;
+        }
+        catch (error) {
+            if (signal.aborted)
+                throw error;
+            return false;
+        }
     }
     /**
      * One search attempt: fetch, parse, and classify the body. `isLastAttempt`
-     * lets an empty envelope that has persisted through the whole retry budget
-     * be attributed to a caller-supplied cursor.
+     * lets an empty envelope on the last attempt the retry budget allows be
+     * attributed to a caller-supplied cursor.
      */
     async searchOnce(params, isLastAttempt) {
         const text = await this.client.search(params);
@@ -143,7 +219,6 @@ export class EuropePmcService {
             throw serializationError('Failed to parse Europe PMC search JSON response.', {
                 reason: 'europepmc_invalid_response',
                 responseSnippet: text.substring(0, 200),
-                ...recoveryFor('europepmc_invalid_response'),
             }, { cause: error });
         }
         /**
@@ -155,6 +230,7 @@ export class EuropePmcService {
         if (errMsg) {
             throw validationError(`Europe PMC rejected the request: ${errMsg}`, {
                 reason: 'europepmc_invalid_input',
+                retryable: false,
                 epmcErrCode: parsed.errCode,
                 epmcErrMsg: errMsg,
                 recovery: { hint: `Europe PMC reported: "${errMsg}". Fix the input and retry.` },
@@ -168,25 +244,28 @@ export class EuropePmcService {
          *
          * - A sort that EPMC rejects every time (see `sortExplainsEnvelope`) fails
          *   fast as non-retryable input — retrying only adds backoff.
-         * - A non-default cursor that draws it on every attempt is most likely
-         *   invalid or expired; EPMC rejects a malformed cursor every time.
+         * - A non-default cursor that draws it on the last attempt the retry budget
+         *   allows is most likely invalid or expired; EPMC rejects a malformed
+         *   cursor every time. Earlier attempts may have failed another way.
          * - Otherwise it is intermittent upstream noise — valid requests, with or
          *   without a documented sort, draw it on a fraction of calls and succeed
          *   when repeated — so it is thrown as a transient `europepmc_unreachable`
          *   for the retry loop, and never names the caller's input. (#159)
          *
          * Each throw keeps the diagnosis (message) apart from the next step
-         * (recovery hint): the framework mirrors `data.recovery.hint` into
-         * `content[]`, and one string passed as both renders byte-identical
-         * Error:/Recovery: blocks. (#75)
+         * (recovery hint): the framework renders `data.recovery.hint` in
+         * `content[]` as a `Recovery:` line only when the message does not already
+         * contain it, so one string passed as both would leave the caller the
+         * diagnosis and no separate next step. (#75)
          */
         if (parsed.hitCount === undefined &&
             parsed.request === undefined &&
             parsed.resultList === undefined) {
-            const cursorMark = params.cursorMark && params.cursorMark !== '*' ? params.cursorMark : undefined;
+            const cursorMark = callerCursor(params);
             if (params.sort && sortExplainsEnvelope(params.sort)) {
                 throw validationError(`Europe PMC silently rejected the request — most likely the sort "${params.sort}", which needs a documented field and an asc/desc direction.`, {
                     reason: 'europepmc_invalid_input',
+                    retryable: false,
                     sort: params.sort,
                     ...(cursorMark && { cursorMark }),
                     responseSnippet: text.substring(0, 200),
@@ -196,16 +275,15 @@ export class EuropePmcService {
                 });
             }
             if (cursorMark && isLastAttempt) {
-                throw validationError(`Europe PMC answered every attempt for cursorMark "${cursorMark}" with an empty response — the cursor is most likely invalid or expired.`, {
+                throw validationError(`Europe PMC answered the last attempt for cursorMark "${cursorMark}" with an empty response — the cursor is most likely invalid or expired.`, {
                     reason: 'europepmc_invalid_input',
+                    retryable: false,
                     cursorMark,
                     responseSnippet: text.substring(0, 200),
-                    recovery: {
-                        hint: 'Restart from the first page with `cursorMark: "*"`, or pass the exact `nextCursorMark` from the previous response.',
-                    },
+                    recovery: { hint: CURSOR_RECOVERY_HINT },
                 });
             }
-            throw serviceUnavailable('Europe PMC returned an empty response with no hit count or result list.', { reason: 'europepmc_unreachable', ...recoveryFor('europepmc_unreachable') });
+            throw serviceUnavailable('Europe PMC returned an empty response with no hit count or result list.', { reason: 'europepmc_unreachable' });
         }
         const hits = ensureArray(parsed.resultList?.result);
         // Without an echo, report the query actually sent — source filter included —
@@ -256,7 +334,7 @@ export class EuropePmcService {
      *     publishes no fullTextXML (404 or empty body).
      */
     async fullTextXml(epmcId, source, signal) {
-        const outcome = await this.queue.enqueue(() => this.withRetry(() => this.client.fullTextXml(epmcId, signal), `fullTextXml(${epmcId})`, signal), `fullTextXml(${epmcId})`, signal);
+        const outcome = await this.runPaced(`fullTextXml(${epmcId})`, signal, () => this.client.fullTextXml(epmcId, signal));
         if (outcome.kind === 'not-available') {
             return { kind: 'not-available', reason: outcome.reason };
         }
@@ -297,7 +375,7 @@ export class EuropePmcService {
      * upstream row count and the PubMed-addressable set they actually get back.
      */
     async fetchRelatedLinks(fetch, kind, pmid, extractRecords, signal) {
-        const text = await this.queue.enqueue(() => this.withRetry(fetch, `${kind}(${pmid})`, signal), `${kind}(${pmid})`, signal);
+        const text = await this.runPaced(`${kind}(${pmid})`, signal, fetch);
         let parsed;
         try {
             parsed = JSON.parse(text);
@@ -306,7 +384,6 @@ export class EuropePmcService {
             throw serializationError(`Failed to parse Europe PMC ${kind} JSON response.`, {
                 reason: 'europepmc_invalid_response',
                 responseSnippet: text.substring(0, 200),
-                ...recoveryFor('europepmc_invalid_response'),
             }, { cause: error });
         }
         /**
@@ -319,6 +396,7 @@ export class EuropePmcService {
         if (errMsg) {
             throw validationError(`Europe PMC rejected the ${kind} request: ${errMsg}`, {
                 reason: 'europepmc_invalid_input',
+                retryable: false,
                 epmcErrCode: parsed.errCode,
                 epmcErrMsg: errMsg,
                 recovery: { hint: `Europe PMC reported: "${errMsg}". Fix the input and retry.` },
@@ -363,7 +441,6 @@ export class EuropePmcService {
             throw serializationError('Received invalid XML from Europe PMC.', {
                 reason: 'europepmc_invalid_response',
                 responseSnippet: xml.substring(0, 200),
-                ...recoveryFor('europepmc_invalid_response'),
             });
         }
         let parsed;
@@ -376,7 +453,6 @@ export class EuropePmcService {
                 reason: 'europepmc_invalid_response',
                 parserError,
                 responseSnippet: xml.substring(0, 200),
-                ...recoveryFor('europepmc_invalid_response'),
             }, { cause: error });
         }
         if (!Array.isArray(parsed))
@@ -385,53 +461,57 @@ export class EuropePmcService {
         return nodes.find((n) => 'article' in n);
     }
     /**
-     * Retry wrapper for transient errors. Mirrors NCBI's `withRetry` minus the
-     * service-level deadline — EPMC requests are cheaper individually and the
-     * caller (typically `ctx.signal`) bounds the total chain. `execute` receives
-     * the zero-based attempt index. On exhaustion the last error keeps its code
-     * and an upstream `retryAfter`, so a 429 still tells the caller how long to
-     * wait. Only a `ServiceUnavailable` gains `europepmc_unreachable` and its hint;
-     * a `Timeout` or `RateLimited` keeps its code with no reason, as the NCBI
-     * service reports them.
+     * Runs one Europe PMC call: a retry loop around the shared request queue, so
+     * every attempt re-queues and is re-paced, and a backoff sleep holds no queue
+     * slot. No service-level deadline — Europe PMC requests are cheap individually
+     * and the caller's signal (typically `ctx.signal`) bounds the total chain; that
+     * signal reaches the queue wait and the backoff sleep. `execute` receives the
+     * one-based attempt number.
+     *
+     * `reclassify`, when given, sees each failed attempt after its queue slot is
+     * released and before the retry decision, with the attempt's signal and its
+     * one-based number. The error it returns is the one the loop judges, so it
+     * can end the retries by returning a non-transient error.
+     *
+     * A caller abort rethrows the caller's own reason; an exhausted failure is
+     * reshaped by {@link toServiceError}, after the loop.
      */
-    async withRetry(execute, label, signal) {
-        for (let attempt = 0; attempt <= this.maxRetries; attempt++) {
+    async runPaced(label, signal, execute, reclassify) {
+        let attempt = 0;
+        try {
+            return await withRetry(({ signal: attemptSignal }) => {
+                const current = ++attempt;
+                return this.queue
+                    .run(() => execute(current), { signal: attemptSignal })
+                    .catch(async (failure) => {
+                    const error = reclassify
+                        ? await reclassify(failure, attemptSignal, current)
+                        : failure;
+                    if (current <= this.maxRetries && isTransient(error)) {
+                        logger.warning(`Europe PMC ${label} failed on attempt ${current} of ${this.maxRetries + 1}.`, requestContextService.createRequestContext({
+                            operation: 'EuropePmcRetry',
+                            additionalContext: {
+                                label,
+                                attempt: current,
+                                error: error instanceof Error ? error.message : String(error),
+                            },
+                        }));
+                    }
+                    throw error;
+                });
+            }, {
+                maxRetries: this.maxRetries,
+                maxDelayMs: MAX_BACKOFF_MS,
+                isTransient,
+                operation: `Europe PMC ${label}`,
+                ...(signal && { signal }),
+            });
+        }
+        catch (error) {
             if (signal?.aborted)
                 throw signal.reason;
-            try {
-                return await execute(attempt);
-            }
-            catch (error) {
-                if (signal?.aborted)
-                    throw signal.reason;
-                if (!(error instanceof McpError))
-                    throw error;
-                if (!defaultIsTransient(error))
-                    throw error;
-                if (attempt < this.maxRetries) {
-                    const baseDelay = Math.min(1000 * 2 ** attempt, MAX_BACKOFF_MS);
-                    const jitter = baseDelay * (0.75 + 0.5 * Math.random());
-                    const retryDelay = Math.round(jitter);
-                    logger.warning(`Europe PMC ${label} failed. Retrying (${attempt + 1}/${this.maxRetries}) in ${retryDelay}ms.`, requestContextService.createRequestContext({
-                        operation: 'EuropePmcRetry',
-                        additionalContext: { label, attempt: attempt + 1, retryDelay },
-                    }));
-                    await abortableSleep(retryDelay, signal);
-                    continue;
-                }
-                const attempts = this.maxRetries + 1;
-                throw new McpError(error.code, `${error.message} (failed after ${attempts} attempts)`, {
-                    ...(error.code === JsonRpcErrorCode.ServiceUnavailable && {
-                        reason: 'europepmc_unreachable',
-                        ...recoveryFor('europepmc_unreachable'),
-                    }),
-                    label,
-                    attempts,
-                    ...(error.data?.retryAfter !== undefined && { retryAfter: error.data.retryAfter }),
-                }, { cause: error });
-            }
+            throw toServiceError(error, label);
         }
-        throw internalError('Europe PMC request failed after all retries.', { label });
     }
 }
 // ─── Init / Accessor ────────────────────────────────────────────────────────
@@ -451,7 +531,7 @@ export function initEuropePmcService() {
         timeoutMs: config.europepmcTimeoutMs,
         ...(config.europepmcEmail && { email: config.europepmcEmail }),
     });
-    const queue = new EuropePmcRequestQueue(config.europepmcRequestDelayMs);
+    const queue = createEuropePmcRequestQueue(config.europepmcRequestDelayMs);
     _service = new EuropePmcService(client, queue, config.europepmcMaxRetries);
     logger.info('Europe PMC service initialized.', requestContextService.createRequestContext({
         operation: 'EuropePmcInit',

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package/dist/services/europe-pmc/request-queue.d.ts

@@ -1,33 +1,17 @@
 /**
- * @fileoverview Rate-limited request scheduler for Europe PMC calls. Caps
- * concurrent in-flight requests and enforces a minimum start-gap between
- * dispatches to stay polite with EBI's infrastructure. Independent rate
- * domain from NCBI's queue — Europe PMC runs on a different host with its
- * own limits.
+ * @fileoverview Request queue for Europe PMC calls, built on the framework pacer.
+ * Caps concurrent in-flight requests and spaces request starts to stay polite with
+ * EBI's infrastructure, and releases a waiting caller the moment its signal aborts.
+ * Each retry attempt re-enters the queue, so a backoff sleep holds no slot and every
+ * attempt waits out the start gap. Independent rate domain from NCBI's queue —
+ * Europe PMC runs on a different host with its own limits.
  * @module src/services/europe-pmc/request-queue
  */
+import { type Pacer } from '@cyanheads/mcp-ts-core/utils';
 /**
- * Schedules Europe PMC requests against two independent ceilings:
- *
- *   - **Throughput** (`minStartGapMs`): minimum delay between two consecutive
- *     dispatch times. Defaults to 200ms to be polite with EBI.
- *   - **Concurrency** (`maxConcurrent`): maximum simultaneous in-flight
- *     requests. Decouples concurrency from rate so slow upstream responses
- *     don't block new dispatches.
- *
- * Enqueue accepts an optional `AbortSignal` so callers can bound their total
- * time inside the scheduler — when the signal fires, a still-waiting task
- * rejects immediately instead of sitting behind a saturated worker.
+ * Creates the pacer every Europe PMC call runs through. No queue-depth cap and no
+ * wait budget: a caller waits for its turn rather than being shed, so the pacer never
+ * rejects on its own — only the caller's signal ends a wait early.
  */
-export declare class EuropePmcRequestQueue {
-    private readonly waiters;
-    private readonly minStartGapMs;
-    private readonly maxConcurrent;
-    private inFlight;
-    private lastStartTime;
-    private nextDispatchTimer;
-    constructor(minStartGapMs: number, maxConcurrent?: number);
-    enqueue<T>(task: () => Promise<T>, label: string, signal?: AbortSignal): Promise<T>;
-    private tryDispatch;
-}
+export declare function createEuropePmcRequestQueue(minStartGapMs: number): Pacer;
 //# sourceMappingURL=request-queue.d.ts.map

package/dist/services/europe-pmc/request-queue.d.ts.map

@@ -1 +1 @@
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