npm - @cyanheads/pubmed-mcp-server - Versions diffs - 2.10.17 → 2.10.19 - Mend

@cyanheads/pubmed-mcp-server 2.10.17 → 2.10.19

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (105) hide show

package/dist/mcp-server/tools/definitions/_visible-text.js ADDED Viewed

@@ -0,0 +1,22 @@
+/**
+ * @fileoverview The one test every blank-input rejection shares: does a value
+ * hold any character a reader could see? `String.prototype.trim` is not enough —
+ * it keeps U+0085 (NEL), control characters such as U+0001 and U+007F (`\p{Cc}`),
+ * every format character (`\p{Cf}`: zero-width space, word joiner, soft
+ * hyphen, …), and the other default-ignorable code points (Hangul fillers such
+ * as U+3164, variation selectors, the combining grapheme joiner), so a value
+ * made only of those reads as nonblank and reaches the upstream as an invisible
+ * term. (#176)
+ * @module src/mcp-server/tools/definitions/_visible-text
+ */
+const VISIBLE_CHARACTER = /[^\p{White_Space}\p{Cc}\p{Cf}\p{Default_Ignorable_Code_Point}]/u;
+/**
+ * True when `value` has at least one character outside `\p{White_Space}`,
+ * `\p{Cc}`, `\p{Cf}`, and `\p{Default_Ignorable_Code_Point}`. Pure: it strips no
+ * markup and decodes no entities, so a caller that sanitizes input runs this on
+ * the sanitized copy.
+ */
+export function hasVisibleText(value) {
+    return VISIBLE_CHARACTER.test(value);
+}
+//# sourceMappingURL=_visible-text.js.map

package/dist/mcp-server/tools/definitions/_visible-text.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"_visible-text.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/_visible-text.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,MAAM,iBAAiB,GAAG,iEAAiE,CAAC;AAE5F;;;;;GAKG;AACH,MAAM,UAAU,cAAc,CAAC,KAAa;IAC1C,OAAO,iBAAiB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AACvC,CAAC"}

package/dist/mcp-server/tools/definitions/convert-ids.tool.d.ts CHANGED Viewed

@@ -34,15 +34,22 @@ export declare const convertIdsTool: import("@cyanheads/mcp-ts-core").ToolDefini
 }, {
     readonly reason: 'ncbi_unreachable';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: 'NCBI E-utilities is unreachable after all retry attempts.';
-    readonly recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.';
+    readonly when: 'NCBI E-utilities failed on every attempt the retry budget allowed — retries ran out, or the next backoff would overrun the total deadline.';
+    readonly recovery: 'Retry after a brief delay; NCBI failed on every attempt this call made.';
+    readonly retryable: true;
+    readonly thrownBy: 'service';
+}, {
+    readonly reason: 'ncbi_rate_limited';
+    readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.RateLimited;
+    readonly when: 'NCBI answered HTTP 429 (too many requests) and the call stopped on it — retries ran out, the next backoff would overrun the total deadline, or the Retry-After NCBI named outlasts the time left or the 30-second backoff cap.';
+    readonly recovery: "Wait as long as `retryAfter` says when present (a number of seconds or an HTTP date), otherwise a few seconds, then retry; NCBI is throttling this server's requests. If the server runs without NCBI_API_KEY, setting it raises the E-utilities ceiling from about 3 to about 10 requests per second and shortens the default gap between requests — an operator setting in the server's environment, not a tool input.";
     readonly retryable: true;
     readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_deadline_exceeded';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Timeout;
-    readonly when: 'Total request deadline expired before NCBI returned a response.';
-    readonly recovery: 'Reduce batch size or retry; NCBI may be under temporary load.';
+    readonly when: 'The total NCBI request deadline expired before NCBI answered successfully — mid-request, while queued, or during a retry backoff.';
+    readonly recovery: 'Retry after a brief delay; NCBI may be under temporary load. For a large batch, split it into smaller calls.';
     readonly retryable: true;
     readonly thrownBy: 'service';
 }, {

package/dist/mcp-server/tools/definitions/convert-ids.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"convert-ids.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/convert-ids.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAsDjD,eAAO,MAAM,cAAc~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAwIzB~~,CAAC"}
1	+ {"version":3,"file":"convert-ids.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/convert-ids.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAsDjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAuIzB,CAAC"}

package/dist/mcp-server/tools/definitions/convert-ids.tool.js CHANGED Viewed

@@ -103,7 +103,7 @@ export const convertIdsTool = tool('pubmed_convert_ids', {
             if (parsed.success)
                 continue;
             const shown = id.length > MAX_ECHOED_ID_LENGTH ? `${id.slice(0, MAX_ECHOED_ID_LENGTH)}…` : id;
-            throw ctx.fail('malformed_id', `Invalid ${input.idType} element "${shown}". ${parsed.error.issues[0]?.message}`, { ...ctx.recoveryFor('malformed_id') });
+            throw ctx.fail('malformed_id', `Invalid ${input.idType} element "${shown}". ${parsed.error.issues[0]?.message}`);
         }
         // The converter parses `0023193287` as PMID 23193287 yet answers "not found
         // in PMC" for it, so a PMID is sent in its canonical form. (#161)

package/dist/mcp-server/tools/definitions/convert-ids.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/dist/mcp-server/tools/definitions/fetch-articles.tool.d.ts CHANGED Viewed

@@ -1,8 +1,8 @@
 /**
  * @fileoverview PubMed fetch tool. Fetches full article metadata by PubMed IDs,
- * including abstracts, authors, journal info, and MeSH terms. A zero-padded
- * PMID is fetched and matched as the PMID it spells; `ids` is accepted as an
- * alias for `pmids`.
+ * including abstracts, authors, journal info, MeSH terms, and linked retraction
+ * and correction notices. A zero-padded PMID is fetched and matched as the PMID
+ * it spells; `ids` is accepted as an alias for `pmids`.
  * @module src/mcp-server/tools/definitions/fetch-articles.tool
  */
 import { z } from '@cyanheads/mcp-ts-core';
@@ -73,6 +73,12 @@ export declare const fetchArticlesTool: import("@cyanheads/mcp-ts-core").ToolDef
         pubmedUrl: z.ZodOptional<z.ZodString>;
         pmcUrl: z.ZodOptional<z.ZodString>;
         publicationTypes: z.ZodOptional<z.ZodArray<z.ZodString>>;
+        commentsCorrections: z.ZodOptional<z.ZodArray<z.ZodObject<{
+            refType: z.ZodString;
+            refSource: z.ZodString;
+            pmid: z.ZodOptional<z.ZodString>;
+            note: z.ZodOptional<z.ZodString>;
+        }, z.core.$strip>>>;
         keywords: z.ZodOptional<z.ZodArray<z.ZodString>>;
         meshTerms: z.ZodOptional<z.ZodArray<z.ZodObject<{
             descriptorName: z.ZodOptional<z.ZodString>;
@@ -116,15 +122,22 @@ export declare const fetchArticlesTool: import("@cyanheads/mcp-ts-core").ToolDef
 }, {
     readonly reason: 'ncbi_unreachable';
     readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: 'NCBI E-utilities is unreachable after all retry attempts.';
-    readonly recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.';
+    readonly when: 'NCBI E-utilities failed on every attempt the retry budget allowed — retries ran out, or the next backoff would overrun the total deadline.';
+    readonly recovery: 'Retry after a brief delay; NCBI failed on every attempt this call made.';
+    readonly retryable: true;
+    readonly thrownBy: 'service';
+}, {
+    readonly reason: 'ncbi_rate_limited';
+    readonly code: JsonRpcErrorCode.RateLimited;
+    readonly when: 'NCBI answered HTTP 429 (too many requests) and the call stopped on it — retries ran out, the next backoff would overrun the total deadline, or the Retry-After NCBI named outlasts the time left or the 30-second backoff cap.';
+    readonly recovery: "Wait as long as `retryAfter` says when present (a number of seconds or an HTTP date), otherwise a few seconds, then retry; NCBI is throttling this server's requests. If the server runs without NCBI_API_KEY, setting it raises the E-utilities ceiling from about 3 to about 10 requests per second and shortens the default gap between requests — an operator setting in the server's environment, not a tool input.";
     readonly retryable: true;
     readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_deadline_exceeded';
     readonly code: JsonRpcErrorCode.Timeout;
-    readonly when: 'Total request deadline expired before NCBI returned a response.';
-    readonly recovery: 'Reduce batch size or retry; NCBI may be under temporary load.';
+    readonly when: 'The total NCBI request deadline expired before NCBI answered successfully — mid-request, while queued, or during a retry backoff.';
+    readonly recovery: 'Retry after a brief delay; NCBI may be under temporary load. For a large batch, split it into smaller calls.';
     readonly retryable: true;
     readonly thrownBy: 'service';
 }, {

package/dist/mcp-server/tools/definitions/fetch-articles.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/fetch-articles.tool.js CHANGED Viewed

@@ -1,8 +1,8 @@
 /**
  * @fileoverview PubMed fetch tool. Fetches full article metadata by PubMed IDs,
- * including abstracts, authors, journal info, and MeSH terms. A zero-padded
- * PMID is fetched and matched as the PMID it spells; `ids` is accepted as an
- * alias for `pmids`.
+ * including abstracts, authors, journal info, MeSH terms, and linked retraction
+ * and correction notices. A zero-padded PMID is fetched and matched as the PMID
+ * it spells; `ids` is accepted as an alias for `pmids`.
  * @module src/mcp-server/tools/definitions/fetch-articles.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
@@ -154,6 +154,24 @@ const GrantSchema = z
     country: z.string().optional().describe('Agency country'),
 })
     .describe('Grant record');
+const CommentsCorrectionSchema = z
+    .object({
+    refType: z
+        .string()
+        .describe('Link type, verbatim from NCBI\'s `RefType` — e.g. "RetractionIn", "RetractionOf", "ErratumIn", "ErratumFor", "ExpressionOfConcernIn", "CommentIn", "CommentOn", "UpdateIn". The set is open: treat an unfamiliar value as opaque.'),
+    refSource: z
+        .string()
+        .describe('Citation of the linked record as NCBI writes it (e.g. "Lancet. 2010 Feb 6;375(9713):445. doi: 10.1016/S0140-6736(10)60175-4.").'),
+    pmid: z
+        .string()
+        .optional()
+        .describe('PMID of the linked record — pass it to `pubmed_fetch_articles` to read that record. Absent when the linked record has no PMID, as with many errata.'),
+    note: z
+        .string()
+        .optional()
+        .describe('NCBI\'s note on the link, e.g. what an erratum corrected ("Fuβer, Fabian [corrected to Fußer, Fabian]"). Absent unless NCBI supplies one.'),
+})
+    .describe('One record NCBI links to this article and published separately from it — for example a retraction notice, erratum, expression of concern, comment, update, or republication.');
 const ArticleDateSchema = z
     .object({
     dateType: z.string().optional().describe('Date type'),
@@ -188,6 +206,10 @@ const FetchedArticleSchema = z
     pubmedUrl: z.string().optional().describe('PubMed article URL'),
     pmcUrl: z.string().optional().describe('PMC full text URL'),
     publicationTypes: z.array(z.string()).optional().describe('Publication types'),
+    commentsCorrections: z
+        .array(CommentsCorrectionSchema)
+        .optional()
+        .describe("Records NCBI links to this article — for example retraction notices, errata, expressions of concern, comments, and updates — from `CommentsCorrectionsList`, in NCBI's order and uncapped. `Cites` entries are excluded: they list a bibliography, which `pubmed_find_related` covers with its `references` relationship. Read this alongside `publicationTypes`, not in place of it: that field describes the record itself, and a corrected or questioned article often carries no matching type. Absent when NCBI links nothing other than `Cites` entries, and never set on `book-chapter` or `book` records."),
     keywords: z.array(z.string()).optional().describe('Keywords'),
     meshTerms: z.array(MeshTermSchema).optional().describe('MeSH terms'),
     grantList: z.array(GrantSchema).optional().describe('Grant information'),
@@ -214,7 +236,7 @@ const DeferredSchema = z
 })
     .describe('Continuation state for articles the whole-response budget withheld. Present only when `maxResponseCharacters` deferred at least one article.');
 export const fetchArticlesTool = tool('pubmed_fetch_articles', {
-    description: 'Fetch full article metadata by PubMed IDs. Returns detailed article information including abstract, authors, journal, MeSH terms. Set `maxResponseCharacters` to bound the whole response: articles past the ceiling are deferred whole and listed in `deferred.ids` for a follow-up call.',
+    description: 'Fetch full article metadata by PubMed IDs. Returns detailed article information including abstract, authors, journal, MeSH terms, and linked retraction, erratum, and comment notices. Set `maxResponseCharacters` to bound the whole response: articles past the ceiling are deferred whole and listed in `deferred.ids` for a follow-up call.',
     annotations: { readOnlyHint: true, openWorldHint: true },
     _meta: conceptMeta([SCHEMA_SCHOLARLY_ARTICLE, EDAM_DATA_RETRIEVAL, EDAM_PUBMED_ID]),
     sourceUrl: 'https://github.com/cyanheads/pubmed-mcp-server/blob/main/src/mcp-server/tools/definitions/fetch-articles.tool.ts',
@@ -273,7 +295,7 @@ export const fetchArticlesTool = tool('pubmed_fetch_articles', {
         const requested = [...new Set(input.pmids.map(normalizePmid))];
         const xmlData = await getNcbiService().eFetch({ db: 'pubmed', id: requested.join(','), retmode: 'xml' }, { retmode: 'xml', usePost: requested.length >= 100, signal: ctx.signal });
         if (!xmlData || !('PubmedArticleSet' in xmlData)) {
-            throw ctx.fail('invalid_efetch_response', 'Invalid EFetch response from NCBI: missing PubmedArticleSet', { requestedPmids: input.pmids.length, ...ctx.recoveryFor('invalid_efetch_response') });
+            throw ctx.fail('invalid_efetch_response', 'Invalid EFetch response from NCBI: missing PubmedArticleSet', { requestedPmids: input.pmids.length });
         }
         // Reads both members of the set. Taking `PubmedArticleSet.PubmedArticle`
         // alone discards every NCBI Bookshelf record, whose PMIDs then surface as
@@ -447,6 +469,19 @@ export const fetchArticlesTool = tool('pubmed_fetch_articles', {
             if (a.articleDates?.length) {
                 lines.push(`**Article Dates:** ${a.articleDates.map(formatArticleDate).join('; ')}`);
             }
+            // Ahead of the abstract, where PubMed itself shows "Retraction in" and
+            // "Erratum in": a notice qualifies how the rest of the record is read.
+            if (a.commentsCorrections?.length) {
+                lines.push(`\n#### Comments and Corrections (${a.commentsCorrections.length})`);
+                if (a.commentsCorrections.some((cc) => cc.pmid)) {
+                    lines.push('Fetch a linked record by its PMID with `pubmed_fetch_articles`.');
+                }
+                for (const cc of a.commentsCorrections) {
+                    const pmid = cc.pmid ? ` — PMID ${cc.pmid}` : '';
+                    const note = cc.note ? ` — Note: ${escapeMarkdownInline(cc.note)}` : '';
+                    lines.push(`- **${escapeMarkdownInline(cc.refType)}:** ${escapeMarkdownInline(cc.refSource)}${pmid}${note}`);
+                }
+            }
             if (a.abstractText)
                 lines.push(`\n#### Abstract\n${a.abstractText}`);
             if (a.keywords?.length)

package/dist/mcp-server/tools/definitions/fetch-articles.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts CHANGED Viewed

@@ -263,15 +263,22 @@ export declare const fetchFulltextTool: import("@cyanheads/mcp-ts-core").ToolDef
 }, {
     readonly reason: 'ncbi_unreachable';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: 'NCBI E-utilities is unreachable after all retry attempts.';
-    readonly recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.';
+    readonly when: 'NCBI E-utilities failed on every attempt the retry budget allowed — retries ran out, or the next backoff would overrun the total deadline.';
+    readonly recovery: 'Retry after a brief delay; NCBI failed on every attempt this call made.';
+    readonly retryable: true;
+    readonly thrownBy: 'service';
+}, {
+    readonly reason: 'ncbi_rate_limited';
+    readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.RateLimited;
+    readonly when: 'NCBI answered HTTP 429 (too many requests) and the call stopped on it — retries ran out, the next backoff would overrun the total deadline, or the Retry-After NCBI named outlasts the time left or the 30-second backoff cap.';
+    readonly recovery: "Wait as long as `retryAfter` says when present (a number of seconds or an HTTP date), otherwise a few seconds, then retry; NCBI is throttling this server's requests. If the server runs without NCBI_API_KEY, setting it raises the E-utilities ceiling from about 3 to about 10 requests per second and shortens the default gap between requests — an operator setting in the server's environment, not a tool input.";
     readonly retryable: true;
     readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_deadline_exceeded';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Timeout;
-    readonly when: 'Total request deadline expired before NCBI returned a response.';
-    readonly recovery: 'Reduce batch size or retry; NCBI may be under temporary load.';
+    readonly when: 'The total NCBI request deadline expired before NCBI answered successfully — mid-request, while queued, or during a retry backoff.';
+    readonly recovery: 'Retry after a brief delay; NCBI may be under temporary load. For a large batch, split it into smaller calls.';
     readonly retryable: true;
     readonly thrownBy: 'service';
 }, {

package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"fetch-fulltext.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/fetch-fulltext.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA8BG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAk7C/D;;;;;;GAMG;AACH,wBAAgB,wBAAwB,CAAC,KAAK,EAAE;IAC9C,SAAS,EAAE,OAAO,CAAC;IACnB,SAAS,EAAE,OAAO,CAAC;CACpB,GAAG,MAAM,CAiCT;AAID,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAg7B5B,CAAC"}

package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.js CHANGED Viewed

@@ -30,6 +30,7 @@
  * @module src/mcp-server/tools/definitions/fetch-fulltext.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
+import { serializationError } from '@cyanheads/mcp-ts-core/errors';
 import { htmlExtractor, pdfParser } from '@cyanheads/mcp-ts-core/utils';
 import { getServerConfig } from '../../../config/server-config.js';
 import { NCBI_SERVICE_ERRORS } from '../../../services/error-contracts.js';
@@ -1571,7 +1572,7 @@ export const fetchFulltextTool = tool('pubmed_fetch_fulltext', {
                 });
                 const articleSet = findOne(xmlData, 'pmc-articleset');
                 if (!articleSet) {
-                    throw new Error('PMC EFetch response missing pmc-articleset wrapper');
+                    throw serializationError('PMC EFetch response missing pmc-articleset wrapper');
                 }
                 // A parsed article with no body sections is front matter only — PMC
                 // returns one whenever the publisher blocks full-text XML download. It
@@ -1634,6 +1635,8 @@ export const fetchFulltextTool = tool('pubmed_fetch_fulltext', {
                 routePmcMissesToFallback(missing);
             }
             catch (error) {
+                if (ctx.signal.aborted)
+                    throw error;
                 const detail = error instanceof Error ? error.message : String(error);
                 ctx.log.warning('PMC EFetch failed; chain continues with next layer', {
                     pmcIdCount: pmcIds.length,
@@ -1778,6 +1781,8 @@ export const fetchFulltextTool = tool('pubmed_fetch_fulltext', {
                         });
                     }
                     catch (error) {
+                        if (ctx.signal.aborted)
+                            throw error;
                         pmcidDoiLookupFailure = error instanceof Error ? error.message : String(error);
                         ctx.log.warning('Failed to resolve PMCID → DOI for the Unpaywall fallback', {
                             error: pmcidDoiLookupFailure,
@@ -1836,6 +1841,8 @@ export const fetchFulltextTool = tool('pubmed_fetch_fulltext', {
                     });
                 }
                 catch (error) {
+                    if (ctx.signal.aborted)
+                        throw error;
                     pmidDoiLookupFailure = error instanceof Error ? error.message : String(error);
                     ctx.log.warning('Failed to batch-fetch DOIs from PubMed for Unpaywall fallback', {
                         error: pmidDoiLookupFailure,
@@ -2255,6 +2262,8 @@ async function searchEpmcSafe(epmc, query, ctx) {
         return result.hits[0] ? { kind: 'hit', hit: result.hits[0] } : { kind: 'miss' };
     }
     catch (error) {
+        if (ctx.signal.aborted)
+            throw error;
         const detail = error instanceof Error ? error.message : String(error);
         ctx.log.warning('Europe PMC search failed; chain continues with next layer', {
             query,
@@ -2332,6 +2341,8 @@ async function fetchEpmcArticle(epmc, hit, args, contextPmid) {
         };
     }
     catch (error) {
+        if (args.ctx.signal.aborted)
+            throw error;
         const detail = error instanceof Error ? error.message : String(error);
         args.ctx.log.warning('Europe PMC fullTextXML failed; chain continues with next layer', {
             epmcId: hit.id,
@@ -2402,6 +2413,8 @@ async function resolveUnpaywall(args, service, ctx) {
         resolution = await service.resolve(doi, ctx.signal);
     }
     catch (error) {
+        if (ctx.signal.aborted)
+            throw error;
         const detail = error instanceof Error ? error.message : String(error);
         ctx.log.warning('Unpaywall DOI resolve failed', { doi, error: detail });
         return { unavailable: { reason: 'service-error', detail } };
@@ -2414,6 +2427,8 @@ async function resolveUnpaywall(args, service, ctx) {
         content = await service.fetchContent(resolution.location, ctx.signal);
     }
     catch (error) {
+        if (ctx.signal.aborted)
+            throw error;
         const detail = error instanceof Error ? error.message : String(error);
         ctx.log.warning('Unpaywall content fetch failed', { doi, error: detail });
         return { unavailable: { reason: 'fetch-failed', detail } };
@@ -2466,6 +2481,8 @@ async function resolveUnpaywall(args, service, ctx) {
         }), text);
     }
     catch (error) {
+        if (ctx.signal.aborted)
+            throw error;
         const detail = error instanceof Error ? error.message : String(error);
         ctx.log.warning('Unpaywall content extraction failed', { pmid, doi, detail });
         return { unavailable: { reason: 'parse-failed', detail } };