@cyanheads/pubmed-mcp-server 2.10.10 → 2.10.11

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (62) hide show
  1. package/AGENTS.md +1 -1
  2. package/CLAUDE.md +1 -1
  3. package/README.md +10 -3
  4. package/dist/mcp-server/tools/definitions/_schemas.d.ts +16 -0
  5. package/dist/mcp-server/tools/definitions/_schemas.d.ts.map +1 -1
  6. package/dist/mcp-server/tools/definitions/_schemas.js +20 -0
  7. package/dist/mcp-server/tools/definitions/_schemas.js.map +1 -1
  8. package/dist/mcp-server/tools/definitions/convert-ids.tool.d.ts +6 -0
  9. package/dist/mcp-server/tools/definitions/convert-ids.tool.d.ts.map +1 -1
  10. package/dist/mcp-server/tools/definitions/convert-ids.tool.js +28 -3
  11. package/dist/mcp-server/tools/definitions/convert-ids.tool.js.map +1 -1
  12. package/dist/mcp-server/tools/definitions/fetch-articles.tool.d.ts +27 -0
  13. package/dist/mcp-server/tools/definitions/fetch-articles.tool.d.ts.map +1 -1
  14. package/dist/mcp-server/tools/definitions/fetch-articles.tool.js +166 -24
  15. package/dist/mcp-server/tools/definitions/fetch-articles.tool.js.map +1 -1
  16. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts +1 -0
  17. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts.map +1 -1
  18. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.js +10 -6
  19. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.js.map +1 -1
  20. package/dist/mcp-server/tools/definitions/find-related.tool.d.ts +4 -0
  21. package/dist/mcp-server/tools/definitions/find-related.tool.d.ts.map +1 -1
  22. package/dist/mcp-server/tools/definitions/find-related.tool.js +40 -4
  23. package/dist/mcp-server/tools/definitions/find-related.tool.js.map +1 -1
  24. package/dist/mcp-server/tools/definitions/format-citations.tool.d.ts.map +1 -1
  25. package/dist/mcp-server/tools/definitions/format-citations.tool.js +11 -13
  26. package/dist/mcp-server/tools/definitions/format-citations.tool.js.map +1 -1
  27. package/dist/mcp-server/tools/definitions/lookup-citation.tool.d.ts.map +1 -1
  28. package/dist/mcp-server/tools/definitions/lookup-citation.tool.js +42 -8
  29. package/dist/mcp-server/tools/definitions/lookup-citation.tool.js.map +1 -1
  30. package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts +4 -0
  31. package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts.map +1 -1
  32. package/dist/mcp-server/tools/definitions/search-articles.tool.js +37 -2
  33. package/dist/mcp-server/tools/definitions/search-articles.tool.js.map +1 -1
  34. package/dist/services/error-contracts.d.ts +17 -0
  35. package/dist/services/error-contracts.d.ts.map +1 -1
  36. package/dist/services/error-contracts.js +19 -0
  37. package/dist/services/error-contracts.js.map +1 -1
  38. package/dist/services/ncbi/formatting/citation-formatter.d.ts +0 -29
  39. package/dist/services/ncbi/formatting/citation-formatter.d.ts.map +1 -1
  40. package/dist/services/ncbi/formatting/citation-formatter.js +381 -30
  41. package/dist/services/ncbi/formatting/citation-formatter.js.map +1 -1
  42. package/dist/services/ncbi/ncbi-service.d.ts +3 -2
  43. package/dist/services/ncbi/ncbi-service.d.ts.map +1 -1
  44. package/dist/services/ncbi/ncbi-service.js +22 -10
  45. package/dist/services/ncbi/ncbi-service.js.map +1 -1
  46. package/dist/services/ncbi/parsing/article-parser.d.ts +45 -2
  47. package/dist/services/ncbi/parsing/article-parser.d.ts.map +1 -1
  48. package/dist/services/ncbi/parsing/article-parser.js +208 -1
  49. package/dist/services/ncbi/parsing/article-parser.js.map +1 -1
  50. package/dist/services/ncbi/parsing/esummary-parser.d.ts.map +1 -1
  51. package/dist/services/ncbi/parsing/esummary-parser.js +32 -1
  52. package/dist/services/ncbi/parsing/esummary-parser.js.map +1 -1
  53. package/dist/services/ncbi/parsing/pmc-article-parser.d.ts.map +1 -1
  54. package/dist/services/ncbi/parsing/pmc-article-parser.js +7 -1
  55. package/dist/services/ncbi/parsing/pmc-article-parser.js.map +1 -1
  56. package/dist/services/ncbi/response-handler.d.ts.map +1 -1
  57. package/dist/services/ncbi/response-handler.js +42 -1
  58. package/dist/services/ncbi/response-handler.js.map +1 -1
  59. package/dist/services/ncbi/types.d.ts +172 -2
  60. package/dist/services/ncbi/types.d.ts.map +1 -1
  61. package/package.json +1 -1
  62. package/server.json +3 -3
package/dist/services/ncbi/parsing/article-parser.js.map CHANGED
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package/dist/services/ncbi/parsing/esummary-parser.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"esummary-parser.d.ts","sourceRoot":"","sources":["../../../../src/services/ncbi/parsing/esummary-parser.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,8BAA8B,CAAC;AAEnE,OAAO,KAAK,EAKV,cAAc,EACd,kBAAkB,EAClB,cAAc,IAAI,iBAAiB,EAEpC,MAAM,aAAa,CAAC;AAGrB;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,CAAC,EAAE,iBAAiB,EAAE,GAAG,MAAM,CAQ3E;AA8BD;;;;;;;GAOG;AACH,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAajE;AAED;;;;GAIG;AACH,wBAAsB,uBAAuB,CAC3C,OAAO,CAAC,EAAE,MAAM,EAChB,aAAa,CAAC,EAAE,cAAc,GAC7B,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CA+B7B;AAsQD;;;GAGG;AACH,wBAAsB,qBAAqB,CACzC,cAAc,CAAC,EAAE,cAAc,EAC/B,OAAO,CAAC,EAAE,cAAc,GACvB,OAAO,CAAC,kBAAkB,EAAE,CAAC,CAkD/B"}
1
+ {"version":3,"file":"esummary-parser.d.ts","sourceRoot":"","sources":["../../../../src/services/ncbi/parsing/esummary-parser.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,8BAA8B,CAAC;AAEnE,OAAO,KAAK,EAKV,cAAc,EACd,kBAAkB,EAClB,cAAc,IAAI,iBAAiB,EAEpC,MAAM,aAAa,CAAC;AAGrB;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,CAAC,EAAE,iBAAiB,EAAE,GAAG,MAAM,CAQ3E;AA8BD;;;;;;;GAOG;AACH,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAajE;AAED;;;;GAIG;AACH,wBAAsB,uBAAuB,CAC3C,OAAO,CAAC,EAAE,MAAM,EAChB,aAAa,CAAC,EAAE,cAAc,GAC7B,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CA+B7B;AAqSD;;;GAGG;AACH,wBAAsB,qBAAqB,CACzC,cAAc,CAAC,EAAE,cAAc,EAC/B,OAAO,CAAC,EAAE,cAAc,GACvB,OAAO,CAAC,kBAAkB,EAAE,CAAC,CAwD/B"}
package/dist/services/ncbi/parsing/esummary-parser.js CHANGED
@@ -207,9 +207,25 @@ function parseESummaryAuthorsFromDocumentSummary(docSummary) {
207
207
  }
208
208
  return parsedAuthors.filter((author) => author.name);
209
209
  }
210
+ /**
211
+ * Split an ESummary contributor list into the record's own authors and the
212
+ * containing book's editors.
213
+ *
214
+ * ESummary lists a book's editors ahead of the chapter's authors, so a display
215
+ * string built from the first few names credits the series editors instead of
216
+ * the people who wrote the chapter — PMID 20301425 reads "Adam MP, Bick S,
217
+ * Mirzaa GM, et al." where the authors are Petrucelli, Daly and Pal. A record
218
+ * whose only contributors are editors keeps them: they are the best attribution
219
+ * it has. (#114)
220
+ */
221
+ function splitContributors(contributors) {
222
+ const editors = contributors.filter((c) => c.authtype?.toLowerCase() === 'editor');
223
+ const authors = contributors.filter((c) => c.authtype?.toLowerCase() !== 'editor');
224
+ return { authors: authors.length > 0 ? authors : contributors, editors };
225
+ }
210
226
  function parseSingleDocumentSummary(docSummary) {
211
227
  const pmid = docSummary['@_uid'];
212
- const authorsArray = parseESummaryAuthorsFromDocumentSummary(docSummary);
228
+ const { authors: authorsArray, editors } = splitContributors(parseESummaryAuthorsFromDocumentSummary(docSummary));
213
229
  let idsArray = [];
214
230
  const articleIdsProp = docSummary.ArticleIds;
215
231
  if (articleIdsProp) {
@@ -230,12 +246,21 @@ function parseSingleDocumentSummary(docSummary) {
230
246
  const source = getText(docSummary.Source) || getText(docSummary.FullJournalName) || getText(docSummary.SO);
231
247
  const rawPubDate = getText(docSummary.PubDate);
232
248
  const rawEPubDate = getText(docSummary.EPubDate);
249
+ // A Bookshelf record leaves Source and FullJournalName empty and carries its
250
+ // venue here instead, so without these a book summary renders with none. (#114)
251
+ const bookTitle = getText(docSummary.BookTitle);
252
+ const publisherName = getText(docSummary.PublisherName);
253
+ const docType = getText(docSummary.DocType);
233
254
  return {
234
255
  pmid: String(pmid),
235
256
  ...(title && { title }),
236
257
  authors: formatESummaryAuthors(authorsArray),
237
258
  authorNames: authorsArray.map((a) => a.name),
259
+ ...(editors.length > 0 && { editors: editors.map((e) => e.name) }),
238
260
  ...(source && { source }),
261
+ ...(bookTitle && { bookTitle }),
262
+ ...(publisherName && { publisherName }),
263
+ ...(docType && { docType }),
239
264
  ...(doiValue && { doi: doiValue }),
240
265
  ...(pmcIdValue && { pmcId: pmcIdValue }),
241
266
  ...(rawPubDate && { rawPubDate }),
@@ -333,7 +358,13 @@ export async function extractBriefSummaries(eSummaryResult, context) {
333
358
  ...(rawSummary.title !== undefined && { title: rawSummary.title }),
334
359
  ...(rawSummary.authors !== undefined && { authors: rawSummary.authors }),
335
360
  ...(rawSummary.authorNames !== undefined && { authorNames: rawSummary.authorNames }),
361
+ ...(rawSummary.editors !== undefined && { editors: rawSummary.editors }),
336
362
  ...(rawSummary.source !== undefined && { source: rawSummary.source }),
363
+ ...(rawSummary.bookTitle !== undefined && { bookTitle: rawSummary.bookTitle }),
364
+ ...(rawSummary.publisherName !== undefined && {
365
+ publisherName: rawSummary.publisherName,
366
+ }),
367
+ ...(rawSummary.docType !== undefined && { docType: rawSummary.docType }),
337
368
  ...(rawSummary.doi !== undefined && { doi: rawSummary.doi }),
338
369
  ...(rawSummary.pmcId !== undefined && { pmcId: rawSummary.pmcId }),
339
370
  ...(pubDate !== undefined && { pubDate }),
package/dist/services/ncbi/parsing/esummary-parser.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/services/ncbi/parsing/pmc-article-parser.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"pmc-article-parser.d.ts","sourceRoot":"","sources":["../../../../src/services/ncbi/parsing/pmc-article-parser.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,KAAK,EACV,gBAAgB,EAChB,cAAc,EAEd,eAAe,EAEf,kBAAkB,EAClB,gBAAgB,EAChB,cAAc,EAEf,MAAM,aAAa,CAAC;AACrB,OAAO,EAOL,KAAK,QAAQ,EAOd,MAAM,sBAAsB,CAAC;AAsH9B,iGAAiG;AACjG,wBAAgB,kBAAkB,CAAC,YAAY,EAAE,QAAQ,GAAG,SAAS,GAAG,eAAe,EAAE,CA2BxF;AA+aD;;;;;;;;;;;;GAYG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,QAAQ,GAAG,SAAS,GAAG,gBAAgB,EAAE,CAyBlF;AAkDD;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,QAAQ,GAAG,SAAS,GAAG,cAAc,EAAE,CAO7E;AAqED;;;;;;;;GAQG;AACH,eAAO,MAAM,iBAAiB,MAAM,CAAC;AAmGrC;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,QAAQ,GAAG,SAAS,GAAG,cAAc,EAAE,CAQ7E;AAuND;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,QAAQ,GAAG,SAAS,GAAG,kBAAkB,EAAE,CAsClF;AAID;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,WAAW,EAAE,QAAQ,GAAG,gBAAgB,CA+CvE"}
1
+ {"version":3,"file":"pmc-article-parser.d.ts","sourceRoot":"","sources":["../../../../src/services/ncbi/parsing/pmc-article-parser.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,KAAK,EACV,gBAAgB,EAChB,cAAc,EAEd,eAAe,EAEf,kBAAkB,EAClB,gBAAgB,EAChB,cAAc,EAEf,MAAM,aAAa,CAAC;AACrB,OAAO,EAOL,KAAK,QAAQ,EAOd,MAAM,sBAAsB,CAAC;AAsH9B,iGAAiG;AACjG,wBAAgB,kBAAkB,CAAC,YAAY,EAAE,QAAQ,GAAG,SAAS,GAAG,eAAe,EAAE,CA2BxF;AAqbD;;;;;;;;;;;;GAYG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,QAAQ,GAAG,SAAS,GAAG,gBAAgB,EAAE,CAyBlF;AAkDD;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,QAAQ,GAAG,SAAS,GAAG,cAAc,EAAE,CAO7E;AAqED;;;;;;;;GAQG;AACH,eAAO,MAAM,iBAAiB,MAAM,CAAC;AAmGrC;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,QAAQ,GAAG,SAAS,GAAG,cAAc,EAAE,CAQ7E;AAuND;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,QAAQ,GAAG,SAAS,GAAG,kBAAkB,EAAE,CAsClF;AAID;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,WAAW,EAAE,QAAQ,GAAG,gBAAgB,CA+CvE"}
package/dist/services/ncbi/parsing/pmc-article-parser.js CHANGED
@@ -168,7 +168,12 @@ function extractJournal(journalMeta, articleMeta) {
168
168
  const fpage = articleMeta ? textContent(findOne(articleMeta, 'fpage')) : '';
169
169
  const lpage = articleMeta ? textContent(findOne(articleMeta, 'lpage')) : '';
170
170
  const pages = fpage && lpage ? `${fpage}-${lpage}` : fpage || undefined;
171
- if (!title && !issn && !volume && !issue && !pages)
171
+ // Article number for the roughly half of PMC deposits that carry
172
+ // <elocation-id> and no <fpage>. Distinct from pages, never a stand-in for it.
173
+ const elocationId = articleMeta
174
+ ? textContent(findOne(articleMeta, 'elocation-id')) || undefined
175
+ : undefined;
176
+ if (!title && !issn && !volume && !issue && !pages && !elocationId)
172
177
  return;
173
178
  return {
174
179
  ...(title && { title }),
@@ -176,6 +181,7 @@ function extractJournal(journalMeta, articleMeta) {
176
181
  ...(volume && { volume }),
177
182
  ...(issue && { issue }),
178
183
  ...(pages && { pages }),
184
+ ...(elocationId && { elocationId }),
179
185
  };
180
186
  }
181
187
  function extractPubDate(articleMeta) {
package/dist/services/ncbi/parsing/pmc-article-parser.js.map CHANGED
@@ -1 +1 @@
1
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+ {"version":3,"file":"response-handler.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/response-handler.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAsBH,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAC;AAmNrD;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAMvD;AAeD;;;GAGG;AACH,qBAAa,mBAAmB;IAC9B,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAgB;IAC1C;;;;OAIG;IACH,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAgB;IACjD;;;;;;;;;OASG;IACH,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAAgB;IAElD,cAcC;IAED;;;;;;;;OAQG;IACH,OAAO,CAAC,cAAc;IA2BtB,wBAAwB,CAAC,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,MAAM,EAAE,CAoBrE;IAED,sBAAsB,CAAC,CAAC,EACtB,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,MAAM,EAChB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,CAAC,CAsOH;CACF"}
package/dist/services/ncbi/response-handler.js CHANGED
@@ -19,14 +19,26 @@ import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
19
19
  import { XMLParser as FastXmlParser, XMLValidator } from 'fast-xml-parser';
20
20
  import { recoveryFor } from '../error-contracts.js';
21
21
  import { ORDERED_XML_PARSER_OPTIONS, XML_PROCESS_ENTITIES_OPTIONS, } from './parsing/ordered-xml-parser-options.js';
22
+ import { decodeHtmlEntities } from './parsing/text-helpers.js';
22
23
  /**
23
24
  * jpaths that NCBI may return as either a single value or an array.
24
25
  * The `isArray` callback forces these to always parse as arrays for consistency.
26
+ *
27
+ * A jpath is the **full** dotted path from the document root, so only an entry
28
+ * that spells out every ancestor matches. Read sites still pass values through
29
+ * `ensureArray`, which is what makes the shorter, ancestor-less entries below
30
+ * harmless.
25
31
  */
26
32
  const NCBI_ARRAY_JPATHS = new Set([
27
33
  'IdList.Id',
28
34
  'eSearchResult.IdList.Id',
29
35
  'PubmedArticleSet.PubmedArticle',
36
+ 'PubmedArticleSet.PubmedBookArticle',
37
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.AuthorList',
38
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.PublicationType',
39
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.Book.AuthorList',
40
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.Book.ELocationID',
41
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.Book.Isbn',
30
42
  'PubmedArticleSet.DeleteCitation.PMID',
31
43
  'AuthorList.Author',
32
44
  'AffiliationInfo',
@@ -134,6 +146,11 @@ const ERROR_TAG_REGEX = /<ERROR(?:\s[^>]*)?>/;
134
146
  * Unicode superscript map. Covers digits, common operators, and the few
135
147
  * letters that have superscript codepoints (n, i). `−` (U+2212, the proper
136
148
  * minus) is normalized to U+207B alongside ASCII `-`.
149
+ *
150
+ * `®` and `™` map to themselves. They have no superscript codepoint because
151
+ * they need none — the glyphs are already raised, and the `<sup>` around them
152
+ * (`GeneReviews<sup>&#xae;</sup>`) is presentation, not content. Without an
153
+ * entry the `^` fallback fires and a book title renders `GeneReviews^®`. (#114)
137
154
  */
138
155
  const SUPERSCRIPT_MAP = {
139
156
  '0': '⁰',
@@ -154,6 +171,8 @@ const SUPERSCRIPT_MAP = {
154
171
  ')': '⁾',
155
172
  n: 'ⁿ',
156
173
  i: 'ⁱ',
174
+ '®': '®',
175
+ '™': '™',
157
176
  };
158
177
  /**
159
178
  * Unicode subscript map. Covers digits and operators; alphabetic subscripts
@@ -178,9 +197,19 @@ const SUBSCRIPT_MAP = {
178
197
  '(': '₍',
179
198
  ')': '₎',
180
199
  };
200
+ /**
201
+ * Map one `<sup>`/`<sub>` payload, or fall back to the ASCII prefix form.
202
+ *
203
+ * Lookup runs on the decoded text because this pass happens before the XML
204
+ * parser: a registered mark reaches it as `&#xae;`, not `®`, and a per-character
205
+ * lookup over the entity's own characters can only ever miss. The fallback
206
+ * returns the *original* content, so an unmappable payload keeps whatever
207
+ * encoding it arrived in and the string stays valid XML for the parser that
208
+ * follows — nothing in either table decodes to `&`, `<` or `>`.
209
+ */
181
210
  function mapInlineContent(content, table, asciiPrefix) {
182
211
  let out = '';
183
- for (const ch of content) {
212
+ for (const ch of decodeHtmlEntities(content)) {
184
213
  const mapped = table[ch];
185
214
  if (mapped === undefined)
186
215
  return `${asciiPrefix}${content}`;
@@ -212,6 +241,17 @@ export function flattenInlineMarkup(xml) {
212
241
  .replace(/<inf>([^<]*)<\/inf>/g, (_, c) => mapInlineContent(c, SUBSCRIPT_MAP, '_'))
213
242
  .replace(/<\/?(?:i|b|u|sc)>/g, '');
214
243
  }
244
+ /**
245
+ * Keeps `Book/Isbn` out of fast-xml-parser's numeric coercion.
246
+ *
247
+ * An ISBN-10 can start with a zero (`0309605393`); coerced, it becomes the
248
+ * number 309605393 and the leading digit is gone before any read site sees it,
249
+ * so the record ships a wrong ISBN with no error anywhere. The processor's
250
+ * contract does the work: returning `undefined` leaves the raw text alone,
251
+ * while returning the value unchanged for every other tag keeps the existing
252
+ * coercion exactly as it was. (#114)
253
+ */
254
+ const preserveIsbnText = (tagName, tagValue) => tagName === 'Isbn' ? undefined : tagValue;
215
255
  /**
216
256
  * Parses NCBI E-utility responses (XML, JSON, text) and checks for NCBI-specific
217
257
  * error structures embedded in response bodies.
@@ -243,6 +283,7 @@ export class NcbiResponseHandler {
243
283
  processEntities: XML_PROCESS_ENTITIES_OPTIONS,
244
284
  htmlEntities: true,
245
285
  isArray: (_name, jpath) => NCBI_ARRAY_JPATHS.has(jpath),
286
+ tagValueProcessor: preserveIsbnText,
246
287
  };
247
288
  this.xmlParser = new FastXmlParser({ ...flatOptions, parseTagValue: true });
248
289
  this.verbatimXmlParser = new FastXmlParser({ ...flatOptions, parseTagValue: false });
package/dist/services/ncbi/response-handler.js.map CHANGED
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1
+ 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