@cyanheads/protein-mcp-server 0.3.3 → 0.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +32 -25
- package/CLAUDE.md +32 -25
- package/Dockerfile +16 -7
- package/LICENSE +1 -1
- package/README.md +7 -5
- package/changelog/0.4.x/0.4.0.md +15 -0
- package/changelog/0.4.x/0.4.1.md +32 -0
- package/changelog/template.md +60 -19
- package/dist/mcp-server/tools/definitions/_schemas.d.ts +34 -6
- package/dist/mcp-server/tools/definitions/_schemas.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/_schemas.js +149 -9
- package/dist/mcp-server/tools/definitions/_schemas.js.map +1 -1
- package/dist/mcp-server/tools/definitions/analyze-collection.tool.d.ts +9 -4
- package/dist/mcp-server/tools/definitions/analyze-collection.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/analyze-collection.tool.js +42 -13
- package/dist/mcp-server/tools/definitions/analyze-collection.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/compare-structures.tool.d.ts +4 -4
- package/dist/mcp-server/tools/definitions/compare-structures.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/compare-structures.tool.js +11 -2
- package/dist/mcp-server/tools/definitions/compare-structures.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-annotations.tool.d.ts +3 -1
- package/dist/mcp-server/tools/definitions/get-annotations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-annotations.tool.js +49 -4
- package/dist/mcp-server/tools/definitions/get-annotations.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-structure.tool.d.ts +2 -2
- package/dist/mcp-server/tools/definitions/get-structure.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-structure.tool.js +12 -4
- package/dist/mcp-server/tools/definitions/get-structure.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/search-structures.tool.d.ts +5 -3
- package/dist/mcp-server/tools/definitions/search-structures.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/search-structures.tool.js +22 -15
- package/dist/mcp-server/tools/definitions/search-structures.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/track-ligands.tool.d.ts +2 -2
- package/dist/services/alignment/alignment-service.d.ts.map +1 -1
- package/dist/services/alphafold/alphafold-service.d.ts.map +1 -1
- package/dist/services/alphafold/alphafold-service.js +1 -0
- package/dist/services/alphafold/alphafold-service.js.map +1 -1
- package/dist/services/beacons/beacons-service.d.ts.map +1 -1
- package/dist/services/foldseek/foldseek-service.d.ts.map +1 -1
- package/dist/services/rcsb/facets.d.ts +19 -19
- package/dist/services/rcsb/facets.d.ts.map +1 -1
- package/dist/services/rcsb/rcsb-service.d.ts +2 -2
- package/dist/services/rcsb/rcsb-service.d.ts.map +1 -1
- package/dist/services/rcsb/rcsb-service.js +24 -4
- package/dist/services/rcsb/rcsb-service.js.map +1 -1
- package/dist/services/rcsb/types.d.ts +14 -3
- package/dist/services/rcsb/types.d.ts.map +1 -1
- package/dist/services/shared/attribution.d.ts +6 -3
- package/dist/services/shared/attribution.d.ts.map +1 -1
- package/dist/services/shared/attribution.js +12 -2
- package/dist/services/shared/attribution.js.map +1 -1
- package/dist/services/shared/http.d.ts +7 -2
- package/dist/services/shared/http.d.ts.map +1 -1
- package/dist/services/shared/http.js +8 -18
- package/dist/services/shared/http.js.map +1 -1
- package/dist/services/uniprot/uniprot-service.d.ts.map +1 -1
- package/dist/services/uniprot/uniprot-service.js +1 -0
- package/dist/services/uniprot/uniprot-service.js.map +1 -1
- package/package.json +11 -10
- package/server.json +3 -3
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@cyanheads/protein-mcp-server",
|
|
3
|
-
"version": "0.
|
|
3
|
+
"version": "0.4.1",
|
|
4
4
|
"mcpName": "io.github.cyanheads/protein-mcp-server",
|
|
5
5
|
"description": "Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models via MCP. STDIO or Streamable HTTP.",
|
|
6
6
|
"type": "module",
|
|
@@ -70,7 +70,7 @@
|
|
|
70
70
|
"url": "https://github.com/cyanheads/protein-mcp-server/issues"
|
|
71
71
|
},
|
|
72
72
|
"homepage": "https://github.com/cyanheads/protein-mcp-server#readme",
|
|
73
|
-
"author": "
|
|
73
|
+
"author": "Casey Hand <casey@caseyjhand.com> (https://caseyjhand.com)",
|
|
74
74
|
"funding": [
|
|
75
75
|
{
|
|
76
76
|
"type": "github",
|
|
@@ -82,7 +82,7 @@
|
|
|
82
82
|
}
|
|
83
83
|
],
|
|
84
84
|
"license": "Apache-2.0",
|
|
85
|
-
"packageManager": "bun@1.3.
|
|
85
|
+
"packageManager": "bun@1.3.14",
|
|
86
86
|
"engines": {
|
|
87
87
|
"bun": ">=1.3.0",
|
|
88
88
|
"node": ">=24.0.0"
|
|
@@ -91,17 +91,18 @@
|
|
|
91
91
|
"access": "public"
|
|
92
92
|
},
|
|
93
93
|
"dependencies": {
|
|
94
|
-
"@cyanheads/mcp-ts-core": "^0.
|
|
94
|
+
"@cyanheads/mcp-ts-core": "^0.11.5",
|
|
95
95
|
"pino-pretty": "^13.1.3",
|
|
96
96
|
"zod": "^4.4.3"
|
|
97
97
|
},
|
|
98
98
|
"devDependencies": {
|
|
99
|
-
"@biomejs/biome": "2.5.
|
|
100
|
-
"@
|
|
99
|
+
"@biomejs/biome": "2.5.8",
|
|
100
|
+
"@socketsecurity/bun-security-scanner": "^1.1.2",
|
|
101
|
+
"@types/node": "26.2.0",
|
|
101
102
|
"depcheck": "^1.4.7",
|
|
102
|
-
"ignore": "^7.0.
|
|
103
|
-
"tsc-alias": "^1.
|
|
104
|
-
"typescript": "^
|
|
105
|
-
"vitest": "^4.1.
|
|
103
|
+
"ignore": "^7.0.6",
|
|
104
|
+
"tsc-alias": "^1.9.1",
|
|
105
|
+
"typescript": "^7.0.2",
|
|
106
|
+
"vitest": "^4.1.10"
|
|
106
107
|
}
|
|
107
108
|
}
|
package/server.json
CHANGED
|
@@ -6,7 +6,7 @@
|
|
|
6
6
|
"url": "https://github.com/cyanheads/protein-mcp-server",
|
|
7
7
|
"source": "github"
|
|
8
8
|
},
|
|
9
|
-
"version": "0.
|
|
9
|
+
"version": "0.4.1",
|
|
10
10
|
"remotes": [
|
|
11
11
|
{
|
|
12
12
|
"type": "streamable-http",
|
|
@@ -19,7 +19,7 @@
|
|
|
19
19
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
20
20
|
"identifier": "@cyanheads/protein-mcp-server",
|
|
21
21
|
"runtimeHint": "node",
|
|
22
|
-
"version": "0.
|
|
22
|
+
"version": "0.4.1",
|
|
23
23
|
"packageArguments": [
|
|
24
24
|
{
|
|
25
25
|
"type": "positional",
|
|
@@ -48,7 +48,7 @@
|
|
|
48
48
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
49
49
|
"identifier": "@cyanheads/protein-mcp-server",
|
|
50
50
|
"runtimeHint": "node",
|
|
51
|
-
"version": "0.
|
|
51
|
+
"version": "0.4.1",
|
|
52
52
|
"packageArguments": [
|
|
53
53
|
{
|
|
54
54
|
"type": "positional",
|