@cyanheads/protein-mcp-server 0.3.3 → 0.4.1

package/dist/services/rcsb/facets.d.ts

@@ -8,37 +8,37 @@ import type { FacetSpec } from './rcsb-service.js';
 /** The supported `group_by` / facet dimensions and how RCSB aggregates each. */
 export declare const FACET_DIMENSIONS: {
     readonly method: {
-        readonly attribute: "exptl.method";
-        readonly aggregation: "terms";
-        readonly label: "Experimental method";
+        readonly attribute: 'exptl.method';
+        readonly aggregation: 'terms';
+        readonly label: 'Experimental method';
     };
     readonly organism: {
-        readonly attribute: "rcsb_entity_source_organism.ncbi_scientific_name";
-        readonly aggregation: "terms";
-        readonly label: "Source organism";
+        readonly attribute: 'rcsb_entity_source_organism.ncbi_scientific_name';
+        readonly aggregation: 'terms';
+        readonly label: 'Source organism';
     };
     readonly polymer_type: {
-        readonly attribute: "rcsb_entry_info.polymer_composition";
-        readonly aggregation: "terms";
-        readonly label: "Polymer composition";
+        readonly attribute: 'rcsb_entry_info.polymer_composition';
+        readonly aggregation: 'terms';
+        readonly label: 'Polymer composition';
     };
     readonly resolution: {
-        readonly attribute: "rcsb_entry_info.resolution_combined";
-        readonly aggregation: "histogram";
+        readonly attribute: 'rcsb_entry_info.resolution_combined';
+        readonly aggregation: 'histogram';
         readonly defaultInterval: 0.5;
-        readonly label: "Resolution (Å)";
+        readonly label: 'Resolution (Å)';
     };
     readonly release_year: {
-        readonly attribute: "rcsb_accession_info.initial_release_date";
-        readonly aggregation: "date_histogram";
-        readonly defaultInterval: "year";
-        readonly label: "Release year";
+        readonly attribute: 'rcsb_accession_info.initial_release_date';
+        readonly aggregation: 'date_histogram';
+        readonly defaultInterval: 'year';
+        readonly label: 'Release year';
     };
     readonly molecular_weight: {
-        readonly attribute: "rcsb_entry_info.molecular_weight";
-        readonly aggregation: "histogram";
+        readonly attribute: 'rcsb_entry_info.molecular_weight';
+        readonly aggregation: 'histogram';
         readonly defaultInterval: 50;
-        readonly label: "Molecular weight (kDa)";
+        readonly label: 'Molecular weight (kDa)';
     };
 };
 /** A supported facet dimension name. */

package/dist/services/rcsb/facets.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"facets.d.ts","sourceRoot":"","sources":["../../../src/services/rcsb/facets.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,mBAAmB,CAAC;AAWnD,gFAAgF;AAChF,eAAO,MAAM,gBAAgB;;iBAEzB,SAAS,EAAE,cAAc;iBACzB,WAAW,EAAE,OAAO;iBACpB,KAAK,EAAE,qBAAqB;;;iBAG5B,SAAS,EAAE,kDAAkD;iBAC7D,WAAW,EAAE,OAAO;iBACpB,KAAK,EAAE,iBAAiB;;;iBAGxB,SAAS,EAAE,qCAAqC;iBAChD,WAAW,EAAE,OAAO;iBACpB,KAAK,EAAE,qBAAqB;;;iBAG5B,SAAS,EAAE,qCAAqC;iBAChD,WAAW,EAAE,WAAW;iBACxB,eAAe,EAAE,GAAG;iBACpB,KAAK,EAAE,gBAAgB;;;iBAGvB,SAAS,EAAE,0CAA0C;iBACrD,WAAW,EAAE,gBAAgB;iBAC7B,eAAe,EAAE,MAAM;iBACvB,KAAK,EAAE,cAAc;;;iBAGrB,SAAS,EAAE,kCAAkC;iBAC7C,WAAW,EAAE,WAAW;iBACxB,eAAe,EAAE,EAAE;iBACnB,KAAK,EAAE,wBAAwB;;CAEc,CAAC;AAElD,wCAAwC;AACxC,MAAM,MAAM,kBAAkB,GAAG,MAAM,OAAO,gBAAgB,CAAC;AAE/D,qDAAqD;AACrD,eAAO,MAAM,qBAAqB,EAAoC,CACpE,kBAAkB,EAClB,GAAG,kBAAkB,EAAE,CACxB,CAAC;AAEF,sGAAsG;AACtG,wBAAgB,cAAc,CAC5B,SAAS,EAAE,kBAAkB,EAC7B,QAAQ,CAAC,EAAE,MAAM,GAAG,MAAM,EAC1B,KAAK,CAAC,EAAE,kBAAkB,GACzB,SAAS,CAYX"}

package/dist/services/rcsb/rcsb-service.d.ts

@@ -40,7 +40,7 @@ export declare class RcsbService {
         maxEvalue?: number;
         minIdentity?: number;
         limit?: number;
-        contentType?: ContentType;
+        contentType?: ContentType[];
     }, ctx: Context): Promise<SearchResult>;
     /**
      * Find entries containing a given ligand (exact chemical component ID),
@@ -51,7 +51,7 @@ export declare class RcsbService {
      */
     searchByLigand(compId: string, opts: {
         limit?: number;
-        contentType?: ContentType;
+        contentType?: ContentType[];
     }, ctx: Context): Promise<SearchResult>;
     /**
      * Count PDB entries containing a given ligand (its deposition frequency). Used

package/dist/services/rcsb/rcsb-service.d.ts.map

@@ -1 +1 @@
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package/dist/services/rcsb/rcsb-service.js

@@ -209,6 +209,7 @@ export class RcsbService {
                 operation: 'RcsbService.getChemComp',
                 label: 'RCSB Data API',
                 baseDelayMs: 400,
+                expectedStatuses: [404],
             });
         }
         catch (err) {
@@ -292,10 +293,15 @@ export function buildQuery(params) {
 function textNode(attribute, operator, value) {
     return { type: 'terminal', service: 'text', parameters: { attribute, operator, value } };
 }
-function contentTypeOption(contentType) {
-    if (!contentType)
+/**
+ * Emit the `results_content_type` request option for a content scope. Omitting
+ * the option is not a union — RCSB defaults to experimental only — so a caller
+ * wanting both universes must list both members explicitly.
+ */
+function contentTypeOption(contentTypes) {
+    if (!contentTypes || contentTypes.length === 0)
         return {};
-    return { results_content_type: [contentType] };
+    return { results_content_type: contentTypes };
 }
 /**
  * Ligand-containment search body (exact chemical-component ID), shared by
@@ -316,7 +322,7 @@ function ligandContainmentQuery(compId, contentType, rows, sortByResolution) {
         },
         return_type: 'entry',
         request_options: {
-            ...contentTypeOption(contentType ?? 'experimental'),
+            ...contentTypeOption(contentType ?? ['experimental']),
             paginate: { start: 0, rows },
             ...(sortByResolution
                 ? { sort: [{ sort_by: 'rcsb_entry_info.resolution_combined', direction: 'asc' }] }
@@ -392,7 +398,19 @@ function normalizeBuckets(raw, spec) {
         return bucket;
     });
 }
+/**
+ * RCSB's `source_db` spelling for a computed structure model → the attribution
+ * display name for that provider. An unrecognized value passes through verbatim
+ * rather than being dropped: crediting an unknown modelling provider by its own
+ * name beats silently attributing its model to the PDB.
+ */
+const CSM_PROVIDER_NAMES = {
+    AlphaFoldDB: 'AlphaFold DB',
+    ModelArchive: 'ModelArchive',
+};
 function normalizeEntry(raw) {
+    const sourceDb = raw.rcsb_comp_model_provenance?.source_db;
+    const computedModelProvider = sourceDb ? (CSM_PROVIDER_NAMES[sourceDb] ?? sourceDb) : undefined;
     const polymerEntities = (raw.polymer_entities ?? []).map(normalizePolymerEntity);
     const organisms = [
         ...new Set(polymerEntities.map((e) => e.organism).filter((o) => !!o)),
@@ -404,6 +422,7 @@ function normalizeEntry(raw) {
     const resolution = raw.rcsb_entry_info?.resolution_combined?.[0];
     return {
         id: raw.rcsb_id,
+        ...(computedModelProvider ? { computedModelProvider } : {}),
         ...(raw.struct?.title ? { title: raw.struct.title } : {}),
         ...(methods.length > 0 ? { methods } : {}),
         ...(typeof resolution === 'number' ? { resolution } : {}),
@@ -480,6 +499,7 @@ const ENTRIES_QUERY = `query Entries($ids: [String!]!) {
     rcsb_id
     struct { title }
     exptl { method }
+    rcsb_comp_model_provenance { source_db }
     rcsb_entry_info { resolution_combined molecular_weight }
     rcsb_accession_info { initial_release_date }
     polymer_entities {

package/dist/services/rcsb/rcsb-service.js.map

@@ -1 +1 @@
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package/dist/services/rcsb/types.d.ts

@@ -87,6 +87,13 @@ export interface LigandMeta {
 }
 /** Normalized entry-level metadata from the GraphQL batch. */
 export interface EntryMeta {
+    /**
+     * Modelling provider display name when this ID is a computed structure model
+     * (`AF_*` / `MA_*`) rather than an experimental entry — e.g. "AlphaFold DB",
+     * "ModelArchive". Absent for experimental entries. RCSB serves both universes
+     * through the same entry endpoint, so this is what separates them.
+     */
+    computedModelProvider?: string;
     /** PDB entry ID. */
     id: string;
     /** Bound ligands (non-polymer entities). */
@@ -143,12 +150,16 @@ export interface ChemComp {
     /** Component type (e.g. "non-polymer"). */
     type?: string;
 }
-/** Content-type scope for a search. */
+/** One structure universe RCSB can scope results to. */
 export type ContentType = 'experimental' | 'computational';
 /** Inputs to a structure search (shared by search + analyze tools). */
 export interface StructureSearchParams {
-    /** Result content scope. */
-    contentType?: ContentType;
+    /**
+     * Result content universes, sent as `results_content_type`. Pass both members
+     * for a union — omitting the field is NOT a union upstream, it is RCSB's
+     * experimental-only default, which drops every computed model.
+     */
+    contentType?: ContentType[];
     /** Page size. */
     limit?: number;
     /** Max E-value for a sequence query. */

package/dist/services/rcsb/types.d.ts.map

@@ -1 +1 @@
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package/dist/services/shared/attribution.d.ts

@@ -8,8 +8,11 @@
  * `best_available` structures are federated through 3D-Beacons, an open set of
  * model providers (AlphaFold DB, SWISS-MODEL, BFVD, AlphaFill, …), so an uncurated
  * provider gets an honest fallback entry that asserts no license rather than a
- * fabricated one. Pure data + a projection helper; the Zod output schema and
- * renderer live in the tools' shared `_schemas.ts`.
+ * fabricated one. Computed structure models fetched by RCSB ID (`AF_*` / `MA_*`)
+ * credit their modelling provider (AlphaFold DB, ModelArchive) rather than the
+ * PDB — the RCSB entry endpoint serves them, but the license is the provider's.
+ * Pure data + a projection helper; the Zod output schema and renderer live in
+ * the tools' shared `_schemas.ts`.
  * @module services/shared/attribution
  */
 /**
@@ -17,7 +20,7 @@
  * render order. The structure sources come first (RCSB PDB, then the federated
  * predicted providers), followed by the annotation trio.
  */
-export declare const CURATED_SOURCES: readonly ["RCSB PDB", "AlphaFold DB", "SWISS-MODEL", "BFVD", "UniProt", "InterPro", "GO"];
+export declare const CURATED_SOURCES: readonly ['RCSB PDB', 'AlphaFold DB', 'SWISS-MODEL', 'BFVD', 'ModelArchive', 'UniProt', 'InterPro', 'GO'];
 /** A curated data-source display name with a verified license + citation. */
 export type CuratedSource = (typeof CURATED_SOURCES)[number];
 /** License, citation, and homepage for one contributing data source. */

package/dist/services/shared/attribution.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"attribution.d.ts","sourceRoot":"","sources":["../../../src/services/shared/attribution.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AAEH;;;;GAIG;AACH,eAAO,MAAM,eAAe,YAC1B,UAAU,EACV,cAAc,EACd,aAAa,EACb,MAAM,EACN,cAAc,EACd,SAAS,EACT,UAAU,EACV,IAAI,CACI,CAAC;AAEX,6EAA6E;AAC7E,MAAM,MAAM,aAAa,GAAG,CAAC,OAAO,eAAe,CAAC,CAAC,MAAM,CAAC,CAAC;AAE7D,wEAAwE;AACxE,MAAM,WAAW,WAAW;IAC1B,qEAAqE;IACrE,QAAQ,EAAE,MAAM,CAAC;IACjB,uBAAuB;IACvB,QAAQ,EAAE,MAAM,CAAC;IACjB,sEAAsE;IACtE,OAAO,EAAE,MAAM,CAAC;IAChB,iFAAiF;IACjF,MAAM,EAAE,MAAM,CAAC;CAChB;AAqFD;;;;;;GAMG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,QAAQ,CAAC,MAAM,CAAC,GAAG,WAAW,EAAE,CAQxE"}

package/dist/services/shared/attribution.js

@@ -8,8 +8,11 @@
  * `best_available` structures are federated through 3D-Beacons, an open set of
  * model providers (AlphaFold DB, SWISS-MODEL, BFVD, AlphaFill, …), so an uncurated
  * provider gets an honest fallback entry that asserts no license rather than a
- * fabricated one. Pure data + a projection helper; the Zod output schema and
- * renderer live in the tools' shared `_schemas.ts`.
+ * fabricated one. Computed structure models fetched by RCSB ID (`AF_*` / `MA_*`)
+ * credit their modelling provider (AlphaFold DB, ModelArchive) rather than the
+ * PDB — the RCSB entry endpoint serves them, but the license is the provider's.
+ * Pure data + a projection helper; the Zod output schema and renderer live in
+ * the tools' shared `_schemas.ts`.
  * @module services/shared/attribution
  */
 /**
@@ -22,6 +25,7 @@ export const CURATED_SOURCES = [
     'AlphaFold DB',
     'SWISS-MODEL',
     'BFVD',
+    'ModelArchive',
     'UniProt',
     'InterPro',
     'GO',
@@ -59,6 +63,12 @@ const ATTRIBUTIONS = {
         citation: 'Kim et al., "BFVD—a large repository of predicted viral protein structures," Nucleic Acids Research 53(D1):D340–D347 (2025). DOI: 10.1093/nar/gkae1119',
         homepage: 'https://bfvd.steineggerlab.workers.dev/',
     },
+    ModelArchive: {
+        source: 'ModelArchive',
+        license: 'CC BY 4.0',
+        citation: 'ModelArchive (SIB Swiss Institute of Bioinformatics / Biozentrum, University of Basel). Each deposited model carries its own DOI — cite the model accession alongside its depositors.',
+        homepage: 'https://www.modelarchive.org/',
+    },
     UniProt: {
         source: 'UniProt',
         license: 'CC BY 4.0',

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package/dist/services/shared/http.d.ts

@@ -2,8 +2,7 @@
  * @fileoverview Shared HTTP layer for the protein data providers. Wraps the
  * framework's `fetchWithTimeout` + `withRetry` (retry covers the full fetch +
  * parse pipeline) and centralizes HTML-error-page / empty-body detection so each
- * service stays thin. The single `Context → RequestContext` cast the framework
- * utilities expect is isolated here.
+ * service stays thin.
  * @module services/shared/http
  */
 import type { Context } from '@cyanheads/mcp-ts-core';
@@ -13,6 +12,12 @@ export interface FetchOptions {
     baseDelayMs?: number;
     /** Request body (pre-serialized JSON string, FormData, etc.). */
     body?: RequestInit['body'];
+    /**
+     * Non-2xx statuses this caller treats as an outcome rather than a failure
+     * (e.g. 404 → "no such record"). They still throw a status-mapped `McpError`
+     * for the caller to branch on, but log at `debug` instead of `error`.
+     */
+    expectedStatuses?: number[];
     /** Request headers. */
     headers?: Record<string, string>;
     /** Human-readable provider label used in error messages. */

package/dist/services/shared/http.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"http.d.ts","sourceRoot":"","sources":["../../../src/services/shared/http.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAmBtD,qDAAqD;AACrD,MAAM,WAAW,YAAY;IAC3B,yCAAyC;IACzC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,iEAAiE;IACjE,IAAI,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC,CAAC;IAC3B;;;;OAIG;IACH,gBAAgB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC5B,uBAAuB;IACvB,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACjC,4DAA4D;IAC5D,KAAK,EAAE,MAAM,CAAC;IACd,wDAAwD;IACxD,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,kCAAkC;IAClC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,oDAAoD;IACpD,SAAS,EAAE,MAAM,CAAC;IAClB,wCAAwC;IACxC,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,CAAC,CAgB3D;AAED;;;;;;GAMG;AACH,wBAAgB,SAAS,CAAC,CAAC,EACzB,GAAG,EAAE,MAAM,EACX,GAAG,EAAE,OAAO,EACZ,IAAI,EAAE,YAAY,GAAG;IAAE,WAAW,CAAC,EAAE,MAAM,CAAC,CAAA;CAAE,GAC7C,OAAO,CAAC,CAAC,CAAC,CAyBZ;AAED,wGAAwG;AACxG,wBAAgB,SAAS,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,EAAE,YAAY,GAAG,OAAO,CAAC,MAAM,CAAC,CAqBxF;AAED;;;;;GAKG;AACH,wBAAgB,aAAa,CAC3B,GAAG,EAAE,MAAM,EACX,GAAG,EAAE,OAAO,EACZ,IAAI,EAAE;IACJ,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC,CAAC;IAC3B,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACjC,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB,GACA,OAAO,CAAC,QAAQ,CAAC,CAoBnB"}

package/dist/services/shared/http.js

@@ -2,8 +2,7 @@
  * @fileoverview Shared HTTP layer for the protein data providers. Wraps the
  * framework's `fetchWithTimeout` + `withRetry` (retry covers the full fetch +
  * parse pipeline) and centralizes HTML-error-page / empty-body detection so each
- * service stays thin. The single `Context → RequestContext` cast the framework
- * utilities expect is isolated here.
+ * service stays thin.
  * @module services/shared/http
  */
 import { serializationError, serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
@@ -20,14 +19,6 @@ const USER_AGENT = 'protein-mcp-server (+https://github.com/cyanheads/protein-mc
 function withDefaultHeaders(headers) {
     return { 'User-Agent': USER_AGENT, ...headers };
 }
-/**
- * The framework HTTP utilities type their context parameter as `RequestContext`;
- * the handler `Context` is runtime-compatible (the logger strips non-serializable
- * fields). Cast once here so callers pass `ctx` unchanged.
- */
-function asRequestContext(ctx) {
-    return ctx;
-}
 /**
  * Parse a JSON body, first rejecting HTML error pages and empty responses as
  * transient `ServiceUnavailable` (so `withRetry` retries them rather than feeding
@@ -55,12 +46,12 @@ export function parseJson(text, label) {
  * Content` rather than an empty hit list.
  */
 export function fetchJson(url, ctx, opts) {
-    const rctx = asRequestContext(ctx);
     const timeoutMs = opts.timeoutMs ?? DEFAULT_TIMEOUT_MS;
     return withRetry(async () => {
-        const res = await fetchWithTimeout(url, timeoutMs, rctx, {
+        const res = await fetchWithTimeout(url, timeoutMs, ctx, {
             method: opts.method ?? 'GET',
             ...(opts.body !== undefined && { body: opts.body }),
+            ...(opts.expectedStatuses && { expectedStatuses: opts.expectedStatuses }),
             headers: withDefaultHeaders(opts.headers),
             signal: ctx.signal,
         });
@@ -71,7 +62,7 @@ export function fetchJson(url, ctx, opts) {
         return parseJson(text, opts.label);
     }, {
         operation: opts.operation,
-        context: rctx,
+        context: ctx,
         baseDelayMs: opts.baseDelayMs ?? 400,
         ...(opts.maxRetries !== undefined && { maxRetries: opts.maxRetries }),
         signal: ctx.signal,
@@ -79,19 +70,19 @@ export function fetchJson(url, ctx, opts) {
 }
 /** Fetch raw text (coordinate files, etc.) with retry. Throws a status-mapped `McpError` on non-2xx. */
 export function fetchText(url, ctx, opts) {
-    const rctx = asRequestContext(ctx);
     const timeoutMs = opts.timeoutMs ?? DEFAULT_TIMEOUT_MS;
     return withRetry(async () => {
-        const res = await fetchWithTimeout(url, timeoutMs, rctx, {
+        const res = await fetchWithTimeout(url, timeoutMs, ctx, {
             method: opts.method ?? 'GET',
             ...(opts.body !== undefined && { body: opts.body }),
+            ...(opts.expectedStatuses && { expectedStatuses: opts.expectedStatuses }),
             headers: withDefaultHeaders(opts.headers),
             signal: ctx.signal,
         });
         return res.text();
     }, {
         operation: opts.operation,
-        context: rctx,
+        context: ctx,
         baseDelayMs: opts.baseDelayMs ?? 400,
         ...(opts.maxRetries !== undefined && { maxRetries: opts.maxRetries }),
         signal: ctx.signal,
@@ -104,7 +95,6 @@ export function fetchText(url, ctx, opts) {
  * through. Combines `ctx.signal` with a per-attempt timeout.
  */
 export function fetchResponse(url, ctx, opts) {
-    const rctx = asRequestContext(ctx);
     const timeoutMs = opts.timeoutMs ?? DEFAULT_TIMEOUT_MS;
     return withRetry(() => {
         const signal = AbortSignal.any([ctx.signal, AbortSignal.timeout(timeoutMs)]);
@@ -116,7 +106,7 @@ export function fetchResponse(url, ctx, opts) {
         });
     }, {
         operation: opts.operation,
-        context: rctx,
+        context: ctx,
         baseDelayMs: opts.baseDelayMs ?? 400,
         maxRetries: opts.maxRetries ?? 2,
         signal: ctx.signal,

package/dist/services/shared/http.js.map

@@ -1 +1 @@
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package/dist/services/uniprot/uniprot-service.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"uniprot-service.d.ts","sourceRoot":"","sources":["../../../src/services/uniprot/uniprot-service.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,+BAA+B,CAAC;AAE/D,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gCAAgC,CAAC;AACrE,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AAG9D,yCAAyC;AACzC,MAAM,MAAM,iBAAiB,GAAG,UAAU,GAAG,SAAS,GAAG,UAAU,GAAG,KAAK,CAAC;AAE5E,6EAA6E;AAC7E,MAAM,WAAW,eAAe;IAC9B,sDAAsD;IACtD,QAAQ,EAAE,SAAS,GAAG,SAAS,CAAC;IAChC,6BAA6B;IAC7B,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,6BAA6B;IAC7B,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,+BAA+B;IAC/B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,+EAA+E;IAC/E,IAAI,EAAE,MAAM,CAAC;CACd;AAED,gCAAgC;AAChC,MAAM,WAAW,YAAY;IAC3B,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,EAAE,eAAe,EAAE,CAAC;IAC5B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,4BAA4B;AAC5B,MAAM,WAAW,MAAM;IACrB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;CACd;AAED,0DAA0D;AAC1D,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,eAAe,EAAE,MAAM,EAAE,CAAC;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAyBD,qBAAa,cAAc;IACzB,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;IAEtC,YAAY,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,cAAc,EAAE,YAAY,EAAE,YAAY,EAGnF;IAED,gFAAgF;IAC1E,QAAQ,CACZ,SAAS,EAAE,MAAM,EACjB,OAAO,EAAE,iBAAiB,EAC1B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,YAAY,CAAC,CAWvB;IAED,wEAAwE;IAClE,WAAW,CAAC,SAAS,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAQzE;IAED,wEAAwE;IAClE,WAAW,CAAC,SAAS,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC,CAmB3E;CACF;AA2FD,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,SAAS,EACjB,OAAO,EAAE,cAAc,EACvB,YAAY,EAAE,YAAY,GACzB,IAAI,CAEN;AAED,wBAAgB,iBAAiB,IAAI,cAAc,CAIlD"}

package/dist/services/uniprot/uniprot-service.js

@@ -70,6 +70,7 @@ export class UniProtService {
                 operation: 'UniProtService.getInterPro',
                 label: 'InterPro',
                 baseDelayMs: 400,
+                expectedStatuses: [404],
             });
         }
         catch (err) {

package/dist/services/uniprot/uniprot-service.js.map

@@ -1 +1 @@
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