@cyanheads/brapi-mcp-server 0.4.8 → 0.4.10

package/dist/services/dataset-store/dataset-store.js

@@ -6,6 +6,11 @@
  * `BRAPI_LOAD_LIMIT`. Provenance (source, baseUrl, query) is mandatory on
  * create — research workflows require reproducibility.
  *
+ * When the optional `CanvasBridge` is wired in, `create()` auto-registers
+ * the row payload as a SQL-queryable table and `delete()` drops it again.
+ * Failures in either path log a warning but never break the dataset op —
+ * the canvas surface is an enrichment, not a precondition.
+ *
  * @module services/dataset-store/dataset-store
  */
 import { notFound, validationError } from '@cyanheads/mcp-ts-core/errors';
@@ -15,13 +20,17 @@ const DEFAULT_PAGE_SIZE = 100;
 const MAX_PAGE_SIZE = 1_000;
 export class DatasetStore {
     serverConfig;
-    constructor(serverConfig) {
+    canvasBridge;
+    constructor(serverConfig, canvasBridge) {
         this.serverConfig = serverConfig;
+        this.canvasBridge = canvasBridge;
     }
     /**
      * Persist a new dataset and return its metadata. Rows and metadata are
      * written under separate keys so `summary` / `list` can avoid paying the
-     * row-payload read cost.
+     * row-payload read cost. When the canvas-bridge is wired and enabled,
+     * the rows are auto-registered as a SQL-queryable canvas table; failure
+     * there only logs a warning.
      */
     async create(ctx, input) {
         if (!input.source)
@@ -50,6 +59,14 @@ export class DatasetStore {
             metadata.truncated = true;
         if (typeof input.maxRows === 'number')
             metadata.maxRows = input.maxRows;
+        // Auto-register on the canvas first so the persisted metadata can carry
+        // the dataframe name. Best-effort: a failed registration logs a warning
+        // inside the bridge and returns { registered: false }, leaving
+        // `dataframe` absent on the dataset.
+        const registration = await this.canvasBridge?.registerDataset(ctx, metadata, input.rows);
+        if (registration?.registered && registration.tableName) {
+            metadata.dataframe = registration.tableName;
+        }
         await Promise.all([
             ctx.state.set(metaKey(datasetId), metadata, { ttl }),
             ctx.state.set(rowsKey(datasetId), input.rows, { ttl }),
@@ -122,6 +139,7 @@ export class DatasetStore {
     /** Delete a dataset's metadata and row payload. Idempotent. */
     async delete(ctx, datasetId) {
         await ctx.state.deleteMany([metaKey(datasetId), rowsKey(datasetId)]);
+        await this.canvasBridge?.dropDataset(ctx, datasetId);
     }
 }
 function metaKey(id) {
@@ -175,8 +193,8 @@ function isDatasetMetadata(value) {
         typeof value.datasetId === 'string');
 }
 let _store;
-export function initDatasetStore(serverConfig) {
-    _store = new DatasetStore(serverConfig);
+export function initDatasetStore(serverConfig, canvasBridge) {
+    _store = new DatasetStore(serverConfig, canvasBridge);
 }
 export function getDatasetStore() {
     if (!_store) {

package/dist/services/dataset-store/dataset-store.js.map

@@ -1 +1 @@
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package/dist/services/dataset-store/types.d.ts

@@ -25,6 +25,13 @@ export interface DatasetMetadata {
     columns: string[];
     /** ISO 8601 create timestamp. */
     createdAt: string;
+    /**
+     * Dataframe name when the dataset was auto-registered as a SQL-queryable
+     * dataframe (`ds_<datasetId_with_underscores>`). Omitted when the dataframe
+     * surface is disabled or registration failed. Use with
+     * `brapi_dataframe_query` to run SQL across the rows.
+     */
+    dataframe?: string;
     datasetId: string;
     /** ISO 8601 expiry — when the TTL will evict the dataset. */
     expiresAt: string;

package/dist/services/dataset-store/types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/dataset-store/types.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,MAAM,WAAW,kBAAkB;IACjC,kDAAkD;IAClD,OAAO,EAAE,MAAM,CAAC;IAChB,sEAAsE;IACtE,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,8HAA8H;IAC9H,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,qEAAqE;IACrE,KAAK,EAAE,OAAO,CAAC;IACf,mBAAmB;IACnB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAAC;IAChC,iFAAiF;IACjF,MAAM,EAAE,MAAM,CAAC;IACf,kFAAkF;IAClF,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,iCAAiC;IACjC,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,6DAA6D;IAC7D,SAAS,EAAE,MAAM,CAAC;IAClB,8DAA8D;IAC9D,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,EAAE,OAAO,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;IACjB,qDAAqD;IACrD,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,MAAM,CAAC;IACf,yEAAyE;IACzE,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,MAAM,WAAW,kBAAkB;IACjC,0DAA0D;IAC1D,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,wCAAwC;IACxC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,4CAA4C;IAC5C,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,WAAW;IAC1B,SAAS,EAAE,MAAM,CAAC;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAAC;IAChC,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,kBAAkB;IACjC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,eAAe;IAC9B,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE,eAAe,EAAE,CAAC;CAC7B"}
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/dataset-store/types.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,MAAM,WAAW,kBAAkB;IACjC,kDAAkD;IAClD,OAAO,EAAE,MAAM,CAAC;IAChB,sEAAsE;IACtE,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,8HAA8H;IAC9H,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,qEAAqE;IACrE,KAAK,EAAE,OAAO,CAAC;IACf,mBAAmB;IACnB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAAC;IAChC,iFAAiF;IACjF,MAAM,EAAE,MAAM,CAAC;IACf,kFAAkF;IAClF,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,iCAAiC;IACjC,SAAS,EAAE,MAAM,CAAC;IAClB;;;;;OAKG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,6DAA6D;IAC7D,SAAS,EAAE,MAAM,CAAC;IAClB,8DAA8D;IAC9D,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,EAAE,OAAO,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;IACjB,qDAAqD;IACrD,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,MAAM,CAAC;IACf,yEAAyE;IACzE,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,MAAM,WAAW,kBAAkB;IACjC,0DAA0D;IAC1D,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,wCAAwC;IACxC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,4CAA4C;IAC5C,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,WAAW;IAC1B,SAAS,EAAE,MAAM,CAAC;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAAC;IAChC,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,kBAAkB;IACjC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,eAAe;IAC9B,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE,eAAe,EAAE,CAAC;CAC7B"}

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@cyanheads/brapi-mcp-server",
   "mcpName": "io.github.cyanheads/brapi-mcp-server",
-  "version": "0.4.8",
+  "version": "0.4.10",
   "description": "BrAPI v2.1 MCP server — studies, germplasm, observations, genotypes, images, and pedigrees.",
   "author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
   "type": "module",
@@ -71,16 +71,25 @@
     "access": "public"
   },
   "dependencies": {
-    "@cyanheads/mcp-ts-core": "^0.8.8",
+    "@cyanheads/mcp-ts-core": "^0.8.10",
     "pino-pretty": "^13.1.3"
   },
   "devDependencies": {
     "@biomejs/biome": "^2.4.14",
+    "@duckdb/node-api": "^1.5.2-r.1",
     "@types/node": "^25.6.0",
     "depcheck": "^1.4.7",
     "ignore": "^7.0.5",
     "tsc-alias": "^1.8.17",
     "typescript": "^6.0.3",
     "vitest": "^4.1.5"
+  },
+  "peerDependencies": {
+    "@duckdb/node-api": "^1.5.0"
+  },
+  "peerDependenciesMeta": {
+    "@duckdb/node-api": {
+      "optional": true
+    }
   }
 }

package/server.json

@@ -6,14 +6,14 @@
     "url": "https://github.com/cyanheads/brapi-mcp-server",
     "source": "github"
   },
-  "version": "0.4.8",
+  "version": "0.4.10",
   "packages": [
     {
       "registryType": "npm",
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.4.8",
+      "version": "0.4.10",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:stdio" }
@@ -49,7 +49,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.4.8",
+      "version": "0.4.10",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:http" }