@cyanheads/brapi-mcp-server 0.4.8 → 0.4.10

package/dist/mcp-server/tools/definitions/brapi-dataframe-drop.tool.js

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+/**
+ * @fileoverview `brapi_dataframe_drop` — release a single dataframe by name.
+ * Idempotent (returns `dropped: false` for unknown names rather than failing).
+ * Drops the dataframe and any provenance metadata stored alongside it. The
+ * originating dataset is unaffected — use `brapi_manage_dataset mode=delete`
+ * to drop both.
+ *
+ * @module mcp-server/tools/definitions/brapi-dataframe-drop.tool
+ */
+import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+import { getCanvasBridge } from '../../../services/canvas-bridge/index.js';
+const InputSchema = z.object({
+    dataframe: z
+        .string()
+        .min(1)
+        .describe('Dataframe to drop. Use brapi_dataframe_describe to discover names. Returns dropped:false (no error) when the name is unknown.'),
+});
+const OutputSchema = z.object({
+    dataframe: z.string().describe('The dataframe name that was requested for drop.'),
+    dropped: z
+        .boolean()
+        .describe('True when the dataframe existed and was removed; false when it did not exist.'),
+});
+export const brapiDataframeDrop = tool('brapi_dataframe_drop', {
+    description: 'Drop a dataframe by name. Idempotent — returns dropped:false rather than failing when the name is unknown. The underlying dataset is untouched (use brapi_manage_dataset mode=delete to drop both).',
+    annotations: { readOnlyHint: false, idempotentHint: true, openWorldHint: false },
+    errors: [
+        {
+            reason: 'dataframe_disabled',
+            code: JsonRpcErrorCode.ServiceUnavailable,
+            when: 'Dataframe surface is gated off by env (CANVAS_PROVIDER_TYPE != duckdb or BRAPI_CANVAS_ENABLED=false)',
+            recovery: 'Set CANVAS_PROVIDER_TYPE=duckdb and BRAPI_CANVAS_ENABLED=true on the deployment, or use brapi_manage_dataset for the underlying dataset.',
+        },
+    ],
+    input: InputSchema,
+    output: OutputSchema,
+    async handler(input, ctx) {
+        const bridge = getCanvasBridge();
+        if (!bridge.isEnabled()) {
+            throw ctx.fail('dataframe_disabled', 'brapi_dataframe_drop is unavailable — dataframes are not enabled on this deployment.', { ...ctx.recoveryFor('dataframe_disabled') });
+        }
+        const dropped = await bridge.drop(ctx, input.dataframe);
+        return { dataframe: input.dataframe, dropped };
+    },
+    format: (result) => [
+        {
+            type: 'text',
+            text: result.dropped
+                ? `# Dropped \`${result.dataframe}\`\n- dropped: true`
+                : `# No-op — \`${result.dataframe}\` not found\n- dropped: false`,
+        },
+    ],
+});
+//# sourceMappingURL=brapi-dataframe-drop.tool.js.map

package/dist/mcp-server/tools/definitions/brapi-dataframe-drop.tool.js.map

@@ -0,0 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts

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+/**
+ * @fileoverview `brapi_dataframe_query` — execute SQL across in-memory
+ * dataframes. Dataframes auto-populate when find_* tools spill to DatasetStore
+ * (each becomes `ds_<datasetId>`). Use `registerAs` to materialize a result
+ * as a new dataframe — the response carries a bounded `preview` slice plus
+ * the full `rowCount`. Read-only enforcement is the framework's three-layer
+ * SQL gate (single statement → SELECT only → plan-walk allowlist).
+ *
+ * Defaults to a fresh per-tenant default workspace; the agent never passes a
+ * canvasId. The bridge resolves it via `ctx.state` so multiple calls in the
+ * same session reuse the same workspace.
+ *
+ * @module mcp-server/tools/definitions/brapi-dataframe-query.tool
+ */
+import { z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+export declare const brapiDataframeQuery: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
+    sql: z.ZodString;
+    registerAs: z.ZodOptional<z.ZodString>;
+    preview: z.ZodOptional<z.ZodNumber>;
+    rowLimit: z.ZodOptional<z.ZodNumber>;
+}, z.core.$strip>, z.ZodObject<{
+    rowCount: z.ZodNumber;
+    columns: z.ZodArray<z.ZodString>;
+    rows: z.ZodArray<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+    dataframe: z.ZodOptional<z.ZodString>;
+}, z.core.$strip>, readonly [{
+    readonly reason: "dataframe_disabled";
+    readonly code: JsonRpcErrorCode.ServiceUnavailable;
+    readonly when: "Dataframe surface is gated off by env (CANVAS_PROVIDER_TYPE != duckdb or BRAPI_CANVAS_ENABLED=false)";
+    readonly recovery: "Set CANVAS_PROVIDER_TYPE=duckdb and BRAPI_CANVAS_ENABLED=true on the deployment, or use brapi_manage_dataset for the underlying dataset.";
+}, {
+    readonly reason: "sql_rejected";
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: "SQL violated read-only rules (multi-statement, non-SELECT, or disallowed operation)";
+    readonly recovery: "Submit a single SELECT statement using only registered dataframes. For changes, use `registerAs` in this tool to materialize a result, or brapi_dataframe_drop to remove a dataframe.";
+}]>;
+//# sourceMappingURL=brapi-dataframe-query.tool.d.ts.map

package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts.map

@@ -0,0 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js

@@ -0,0 +1,162 @@
+/**
+ * @fileoverview `brapi_dataframe_query` — execute SQL across in-memory
+ * dataframes. Dataframes auto-populate when find_* tools spill to DatasetStore
+ * (each becomes `ds_<datasetId>`). Use `registerAs` to materialize a result
+ * as a new dataframe — the response carries a bounded `preview` slice plus
+ * the full `rowCount`. Read-only enforcement is the framework's three-layer
+ * SQL gate (single statement → SELECT only → plan-walk allowlist).
+ *
+ * Defaults to a fresh per-tenant default workspace; the agent never passes a
+ * canvasId. The bridge resolves it via `ctx.state` so multiple calls in the
+ * same session reuse the same workspace.
+ *
+ * @module mcp-server/tools/definitions/brapi-dataframe-query.tool
+ */
+import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
+import { getCanvasBridge } from '../../../services/canvas-bridge/index.js';
+/**
+ * Reasons the framework's `assertReadOnlyQuery` (and identifier validator)
+ * attaches to its `validationError` throws — see
+ * `@cyanheads/mcp-ts-core/dist/services/canvas/core/sqlGate.js`. When the
+ * bridge's `query()` rethrows one of these, the handler translates it into
+ * the typed `sql_rejected` contract reason while preserving the granular
+ * gate reason on `data.gateReason`.
+ */
+const SQL_GATE_REASONS = new Set([
+    'multi_statement',
+    'non_select_statement',
+    'plan_operator_not_allowed',
+    'identifier_empty',
+    'identifier_shape',
+    'identifier_reserved',
+]);
+function extractSqlGateReason(err) {
+    if (!(err instanceof McpError))
+        return;
+    if (err.code !== JsonRpcErrorCode.ValidationError)
+        return;
+    const reason = err.data?.reason;
+    return typeof reason === 'string' && SQL_GATE_REASONS.has(reason) ? reason : undefined;
+}
+const InputSchema = z.object({
+    sql: z
+        .string()
+        .min(1)
+        .describe('SELECT statement against dataframes. Single statement only — writes, DDL, file reads, and exports are rejected. Use brapi_dataframe_describe to discover available dataframes.'),
+    registerAs: z
+        .string()
+        .regex(/^[A-Za-z_][A-Za-z0-9_]{0,62}$/)
+        .optional()
+        .describe('Persist the result as a new dataframe under this name. The response still returns at most `preview` rows; the full result remains queryable as a new dataframe. Conflicts with an existing dataframe name fail — drop first via brapi_dataframe_drop. Identifier rules: letters, digits, and underscores; must start with a letter or underscore; max 63 characters.'),
+    preview: z
+        .number()
+        .int()
+        .positive()
+        .max(1000)
+        .optional()
+        .describe('Cap the number of rows returned in this response (1–1000). When omitted, the deployment-wide response cap applies (typically 10,000). Lower this with `registerAs` when you only need a sample to verify the query.'),
+    rowLimit: z
+        .number()
+        .int()
+        .positive()
+        .optional()
+        .describe('Hard cap on rows materialized into the response. Capped to the deployment-wide response cap (typically 10,000). For larger result sets, use `registerAs` to keep the full result queryable instead of raising this.'),
+});
+const OutputSchema = z.object({
+    rowCount: z
+        .number()
+        .int()
+        .nonnegative()
+        .describe('Total rows the query produced (may exceed `rows.length` when capped).'),
+    columns: z
+        .array(z.string().describe('Column name in projection order.'))
+        .describe('Column names in projection order.'),
+    rows: z
+        .array(z.record(z.string(), z.unknown()).describe('One result row.'))
+        .describe('Materialized rows, bounded by preview/rowLimit.'),
+    dataframe: z
+        .string()
+        .optional()
+        .describe('Name of the dataframe holding the full result, populated when `registerAs` was supplied. Reference this name in follow-up queries.'),
+});
+export const brapiDataframeQuery = tool('brapi_dataframe_query', {
+    description: 'Run SQL across in-memory dataframes. Dataframes auto-populate when find_* tools spill (named `ds_<datasetId>`); list them via brapi_dataframe_describe. SELECT only — writes/DDL/COPY/PRAGMA/ATTACH/file-reads are rejected. Use `registerAs` to chain — the result lands as a new dataframe.',
+    annotations: { readOnlyHint: false, idempotentHint: false, openWorldHint: false },
+    errors: [
+        {
+            reason: 'dataframe_disabled',
+            code: JsonRpcErrorCode.ServiceUnavailable,
+            when: 'Dataframe surface is gated off by env (CANVAS_PROVIDER_TYPE != duckdb or BRAPI_CANVAS_ENABLED=false)',
+            recovery: 'Set CANVAS_PROVIDER_TYPE=duckdb and BRAPI_CANVAS_ENABLED=true on the deployment, or use brapi_manage_dataset for the underlying dataset.',
+        },
+        {
+            reason: 'sql_rejected',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'SQL violated read-only rules (multi-statement, non-SELECT, or disallowed operation)',
+            recovery: 'Submit a single SELECT statement using only registered dataframes. For changes, use `registerAs` in this tool to materialize a result, or brapi_dataframe_drop to remove a dataframe.',
+        },
+    ],
+    input: InputSchema,
+    output: OutputSchema,
+    async handler(input, ctx) {
+        const bridge = getCanvasBridge();
+        if (!bridge.isEnabled()) {
+            throw ctx.fail('dataframe_disabled', 'brapi_dataframe_query is unavailable — dataframes are not enabled on this deployment.', { ...ctx.recoveryFor('dataframe_disabled') });
+        }
+        const queryOpts = {};
+        if (input.preview !== undefined)
+            queryOpts.preview = input.preview;
+        if (input.registerAs !== undefined)
+            queryOpts.registerAs = input.registerAs;
+        if (input.rowLimit !== undefined)
+            queryOpts.rowLimit = input.rowLimit;
+        let result;
+        try {
+            result = await bridge.query(ctx, input.sql, queryOpts);
+        }
+        catch (err) {
+            const gateReason = extractSqlGateReason(err);
+            if (gateReason === undefined)
+                throw err;
+            const message = err instanceof Error ? err.message : 'Query rejected.';
+            throw ctx.fail('sql_rejected', message, { gateReason, ...ctx.recoveryFor('sql_rejected') }, { cause: err });
+        }
+        const out = {
+            rowCount: result.rowCount,
+            columns: result.columns,
+            rows: result.rows,
+        };
+        if (result.tableName !== undefined)
+            out.dataframe = result.tableName;
+        return out;
+    },
+    format: (result) => [{ type: 'text', text: renderQuery(result) }],
+});
+function renderQuery(result) {
+    const lines = [];
+    const tableHint = result.dataframe ? ` · registered as \`${result.dataframe}\`` : '';
+    lines.push(`# ${result.rowCount} row(s)${tableHint}`);
+    lines.push(`- columns: ${result.columns.join(', ')}`);
+    lines.push(`- returned: ${result.rows.length}`);
+    if (result.rows.length === 0) {
+        lines.push('');
+        lines.push('_No rows._');
+        return lines.join('\n');
+    }
+    lines.push('');
+    lines.push('## Rows');
+    for (const [i, row] of result.rows.entries()) {
+        lines.push('');
+        lines.push(`### Row ${i + 1}`);
+        for (const col of result.columns) {
+            const value = row[col];
+            if (value === undefined || value === null)
+                continue;
+            const rendered = typeof value === 'object' ? JSON.stringify(value) : String(value);
+            lines.push(`- **${col}:** ${rendered}`);
+        }
+    }
+    return lines.join('\n');
+}
+//# sourceMappingURL=brapi-dataframe-query.tool.js.map

package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js.map

@@ -0,0 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts

@@ -2,8 +2,12 @@
  * @fileoverview `brapi_find_genotype_calls` — pull allele calls across a
  * germplasm × variant set. Uses BrAPI's async-search pattern
  * (`POST /search/calls` → `GET /search/calls/{id}` with 202-retry) under
- * the hood. Enforces a default 100k cap on total calls returned; rows beyond
- * the cap spill into DatasetStore for export.
+ * the hood. The upstream pull is bounded by `BRAPI_GENOTYPE_CALLS_MAX_PULL`
+ * (operator policy, default 100k, max 500k) so a single query can't trigger
+ * unbounded sequential paginated GETs against the upstream BrAPI server.
+ * `loadLimit` bounds the rows returned inline; when the pull exceeds
+ * loadLimit, the full collected set spills to DatasetStore for paged
+ * follow-up.
  *
  * @module mcp-server/tools/definitions/brapi-find-genotype-calls.tool
  */
@@ -17,12 +21,11 @@ export declare const brapiFindGenotypeCalls: import("@cyanheads/mcp-ts-core").To
     callSetDbIds: z.ZodOptional<z.ZodArray<z.ZodString>>;
     variantDbIds: z.ZodOptional<z.ZodArray<z.ZodString>>;
     callFormat: z.ZodOptional<z.ZodEnum<{
+        JSON: "JSON";
         VCF: "VCF";
         FLAPJACK: "FLAPJACK";
         DARTSEQ: "DARTSEQ";
-        JSON: "JSON";
     }>>;
-    maxCalls: z.ZodOptional<z.ZodNumber>;
     loadLimit: z.ZodOptional<z.ZodNumber>;
 }, z.core.$strip>, z.ZodObject<{
     alias: z.ZodString;
@@ -61,6 +64,7 @@ export declare const brapiFindGenotypeCalls: import("@cyanheads/mcp-ts-core").To
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        dataframe: z.ZodOptional<z.ZodString>;
     }, z.core.$strip>>;
     truncated: z.ZodBoolean;
     warnings: z.ZodArray<z.ZodString>;

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"brapi-find-genotype-calls.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA2HjE,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA0NjC,CAAC"}
+{"version":3,"file":"brapi-find-genotype-calls.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA8HjE,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAsNjC,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js

@@ -2,21 +2,24 @@
  * @fileoverview `brapi_find_genotype_calls` — pull allele calls across a
  * germplasm × variant set. Uses BrAPI's async-search pattern
  * (`POST /search/calls` → `GET /search/calls/{id}` with 202-retry) under
- * the hood. Enforces a default 100k cap on total calls returned; rows beyond
- * the cap spill into DatasetStore for export.
+ * the hood. The upstream pull is bounded by `BRAPI_GENOTYPE_CALLS_MAX_PULL`
+ * (operator policy, default 100k, max 500k) so a single query can't trigger
+ * unbounded sequential paginated GETs against the upstream BrAPI server.
+ * `loadLimit` bounds the rows returned inline; when the pull exceeds
+ * loadLimit, the full collected set spills to DatasetStore for paged
+ * follow-up.
  *
  * @module mcp-server/tools/definitions/brapi-find-genotype-calls.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+import { getServerConfig } from '../../../config/server-config.js';
 import { getBrapiClient } from '../../../services/brapi-client/index.js';
 import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
 import { getDatasetStore, } from '../../../services/dataset-store/index.js';
 import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
 import { AliasInput, asString, buildRequestOptions, collectPassthroughParts, computeDistribution, DatasetHandleSchema, renderDatasetHandle, renderDistributions, renderFindHeader, toDatasetHandle, } from '../shared/find-helpers.js';
-const DEFAULT_MAX_CALLS = 100_000;
-const HARD_MAX_CALLS = 500_000;
 const PAGE_SIZE = 10_000;
 const CallRowSchema = z
     .object({
@@ -57,7 +60,7 @@ const OutputSchema = z.object({
         .number()
         .int()
         .nonnegative()
-        .describe('Total calls collected across all pages (may be capped by `maxCalls`).'),
+        .describe('Total calls collected across all pages (may be capped by the deployment-wide pull limit; check `truncated`).'),
     hasMore: z
         .boolean()
         .describe('True when the collection was truncated (equivalent to `truncated`).'),
@@ -97,14 +100,14 @@ const OutputSchema = z.object({
     dataset: DatasetHandleSchema.optional().describe('Dataset handle when the full collected calls exceed loadLimit and were spilled to DatasetStore.'),
     truncated: z
         .boolean()
-        .describe('True when `maxCalls` was reached and more calls exist upstream.'),
+        .describe('True when the deployment-wide pull limit was reached and more calls exist upstream. Narrow the filters and re-pull, or query the spilled dataset/dataframe.'),
     warnings: z
         .array(z.string())
         .describe('Advisory messages (truncation, capability gaps, partial pulls).'),
     searchBody: z.record(z.string(), z.unknown()).describe('The body sent to /search/calls.'),
 });
 export const brapiFindGenotypeCalls = tool('brapi_find_genotype_calls', {
-    description: 'Pull genotype calls for a germplasm × variant set, returned as a single resolved batch. Capped per call by maxCalls; rows beyond loadLimit are persisted as a dataset handle for follow-up paging.',
+    description: 'Pull genotype calls for a germplasm × variant set. Filter to bound cost — at minimum, set `variantSetDbId` or `germplasmDbIds`. The upstream pull is capped by deployment policy (default 100,000 rows, max 500,000); when the pull is truncated, narrow the filters or query the spilled dataframe. `loadLimit` (default 200) bounds the rows returned inline; the full collected set spills to a dataset handle for paged follow-up via brapi_manage_dataset.',
     annotations: { readOnlyHint: true, openWorldHint: true },
     errors: [
         {
@@ -141,18 +144,12 @@ export const brapiFindGenotypeCalls = tool('brapi_find_genotype_calls', {
             .enum(['VCF', 'FLAPJACK', 'DARTSEQ', 'JSON'])
             .optional()
             .describe('Requested call-encoding format, when the server honors it.'),
-        maxCalls: z
-            .number()
-            .int()
-            .positive()
-            .optional()
-            .describe(`Max calls to pull (default ${DEFAULT_MAX_CALLS}, hard cap ${HARD_MAX_CALLS}).`),
         loadLimit: z
             .number()
             .int()
             .positive()
             .optional()
-            .describe('In-context row cap. Rows beyond the cap spill to DatasetStore (if maxCalls > loadLimit).'),
+            .describe('Cap on rows returned inline in the response (default 200). When the upstream pull exceeds this, the full collected set spills to a dataset handle and only the first `loadLimit` rows return inline. Use brapi_manage_dataset (paging) or brapi_dataframe_query (SQL) to work with the full set.'),
     }),
     output: OutputSchema,
     async handler(input, ctx) {
@@ -169,7 +166,7 @@ export const brapiFindGenotypeCalls = tool('brapi_find_genotype_calls', {
         if (dialect.disabledSearchEndpoints?.has('calls')) {
             throw ctx.fail('search_endpoint_disabled', `Dialect '${dialect.id}' marks POST /search/calls as known-dead on this server. Genotype-call workflows are not viable here without bypassing the dialect.`, { dialectId: dialect.id, ...ctx.recoveryFor('search_endpoint_disabled') });
         }
-        const maxCalls = Math.min(input.maxCalls ?? DEFAULT_MAX_CALLS, HARD_MAX_CALLS);
+        const maxCalls = getServerConfig().genotypeCallsMaxPull;
         const loadLimit = input.loadLimit ?? 200;
         const searchBody = buildSearchBody(input);
         if (!searchBody.variantSetDbIds &&
@@ -235,7 +232,7 @@ export const brapiFindGenotypeCalls = tool('brapi_find_genotype_calls', {
             totalCount: result.totalCount,
             dataset: result.dataset,
         });
-        lines.push(result.truncated ? `${headerBase} (truncated at maxCalls)` : headerBase);
+        lines.push(result.truncated ? `${headerBase} (truncated at deployment pull limit)` : headerBase);
         lines.push('');
         lines.push(`Search body: \`${JSON.stringify(result.searchBody)}\``);
         lines.push('');
@@ -362,7 +359,7 @@ async function collectCalls(input) {
     if (rows.length > input.maxCalls) {
         rows.length = input.maxCalls;
         truncated = true;
-        input.warnings.push(`Truncated at maxCalls=${input.maxCalls}. Increase maxCalls or narrow filters.`);
+        input.warnings.push(`Truncated at the deployment pull limit (${input.maxCalls} rows). Narrow the filters and re-pull, or have the operator raise BRAPI_GENOTYPE_CALLS_MAX_PULL.`);
     }
     return { rows, callFormatting, truncated };
 }

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map

@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts

@@ -66,6 +66,7 @@ export declare const brapiFindGermplasm: import("@cyanheads/mcp-ts-core").ToolDe
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        dataframe: z.ZodOptional<z.ZodString>;
     }, z.core.$strip>>;
     warnings: z.ZodArray<z.ZodString>;
     appliedFilters: z.ZodRecord<z.ZodString, z.ZodUnknown>;

package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"brapi-find-germplasm.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-germplasm.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA6IjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAiT7B,CAAC"}
+{"version":3,"file":"brapi-find-germplasm.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-germplasm.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA6IjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAiT7B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts

@@ -59,6 +59,7 @@ export declare const brapiFindImages: import("@cyanheads/mcp-ts-core").ToolDefin
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        dataframe: z.ZodOptional<z.ZodString>;
     }, z.core.$strip>>;
     warnings: z.ZodArray<z.ZodString>;
     appliedFilters: z.ZodRecord<z.ZodString, z.ZodUnknown>;

package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"brapi-find-images.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-images.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA4HjE,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA6O1B,CAAC"}
+{"version":3,"file":"brapi-find-images.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-images.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA4HjE,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA6O1B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts

@@ -58,6 +58,7 @@ export declare const brapiFindLocations: import("@cyanheads/mcp-ts-core").ToolDe
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
+        dataframe: z.ZodOptional<z.ZodString>;
     }, z.core.$strip>>;
     warnings: z.ZodArray<z.ZodString>;
     appliedFilters: z.ZodRecord<z.ZodString, z.ZodUnknown>;

package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"brapi-find-locations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-locations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAsIjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA6R7B,CAAC"}
+{"version":3,"file":"brapi-find-locations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-locations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAsIjE,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+R7B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js

@@ -240,12 +240,14 @@ export const brapiFindLocations = tool('brapi_find_locations', {
                 requestedValues: input.countryCodes,
                 distribution: distributions.countryCode,
                 caseInsensitive: true,
+                requireEveryRowMatch: true,
             },
             {
                 paramName: 'locationTypes',
                 requestedValues: input.locationTypes,
                 distribution: distributions.locationType,
                 caseInsensitive: true,
+                requireEveryRowMatch: true,
             },
         ]);
         const totalCount = bbox ? filteredFull.length : (firstPage.totalCount ?? firstPage.rows.length);

package/dist/mcp-server/tools/definitions/brapi-find-locations.tool.js.map

@@ -1 +1 @@
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