npm - @cyanheads/brapi-mcp-server - Versions diffs - 0.4.6 → 0.4.7 - Mend

@cyanheads/brapi-mcp-server 0.4.6 → 0.4.7

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Files changed (44) hide show

package/CLAUDE.md CHANGED Viewed

@@ -1,7 +1,7 @@
 # Agent Protocol
 **Server:** brapi-mcp-server
-**Version:** 0.4.6
+**Version:** 0.4.7
 **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
 > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.

package/README.md CHANGED Viewed

@@ -7,7 +7,7 @@
 <div align="center">
-[![npm](https://img.shields.io/npm/v/@cyanheads/brapi-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/brapi-mcp-server) [![Version](https://img.shields.io/badge/Version-0.4.6-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
+[![npm](https://img.shields.io/npm/v/@cyanheads/brapi-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/brapi-mcp-server) [![Version](https://img.shields.io/badge/Version-0.4.7-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
 [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.11-blueviolet.svg?style=flat-square)](https://bun.sh/) [![Status](https://img.shields.io/badge/Status-Beta-yellow.svg?style=flat-square)](./CHANGELOG.md)

package/changelog/0.4.x/0.4.7.md ADDED Viewed

@@ -0,0 +1,35 @@
+---
+summary: "Foundational dialect-bypass fix — every BrAPI client GET routes through the dialect adapter, with tight companion-call budgets so slow upstreams no longer 4× the response time."
+breaking: false
+---
+# 0.4.7 — 2026-05-01
+The v0.4.6 release wired the dialect adapter into the `find_*` surface and one `get_germplasm` probe. Every other call site that built GET filter params — `ReferenceDataCache` (programs / trials / locations), `get_study`'s observation / observation-unit / variable count probes, and `submit_observations`'s preflight — bypassed the dialect entirely and shipped the v2.1 plurals to the wire. On SGN-family servers (CassavaBase, Breedbase) those plurals are silently ignored: `/trials?trialDbIds=7526` returns the unfiltered set's row zero (`5CP_Kenya / trialDbId 1911`), and `/observations?studyDbIds=X` triggers a full table scan that exceeds the 30 s timeout. With the global retry budget that meant 4 × 30 s ≈ 2 minutes of waiting per failing companion, every time.
+This release pushes the dialect adapter to the `BrapiClient` edge so every GET — current and future — translates plurals to per-server singulars without each call site having to remember. Companion enrichments now run with their own tight budget (8 s timeout, 0 retries) so a slow upstream surfaces as a single warning instead of stretching the response.
+## Added
+- **`BrapiRequestOptions.dialect`** — when supplied, `BrapiClient.get` extracts the endpoint segment from the path and routes `params` through `dialect.adaptGetFilters` before serializing. Single source of truth for plural/singular translation across every call site. `raw_get` continues to opt out by omitting the field.
+- **`BrapiRequestOptions.warnings`** — sink for dialect translation warnings (downcast, dropped). Threaded through to the same `warnings[]` array the calling tool surfaces in its envelope.
+- **`BrapiRequestOptions.retryMaxAttempts`** — per-call override of the global retry budget. Companion calls set it to `0` so a slow upstream surfaces as one warning rather than 4× the per-attempt timeout.
+- **`DIALECT_ALL_DROPPED_REASON`** + `isDialectAllDropped(err)` — stable error-code constant and type guard. Companion call sites catch and convert to "skip with warning" instead of propagating; find-style call sites continue to throw via their `all_filters_dropped` typed contract.
+- **`companionRequestOptions(connection, dialect, config, warnings, params?)`** in `find-helpers` — bundles the companion-call shape (tight timeout + zero retries + dialect + warnings) so future companion sites stay consistent.
+- **`BRAPI_COMPANION_TIMEOUT_MS`** env var (default 8 s) — per-call timeout for non-critical enrichments. Falls under the existing `BRAPI_REQUEST_TIMEOUT_MS` (30 s) which still governs the main path.
+- **`observationunits` mapping** added to the `cassavabase` and `brapi-test` dialects — `studyDbIds → studyDbId` plus the rest of the cross-FK plurals so observation-unit count probes reach the wire as singulars.
+## Changed
+- **`ReferenceDataCache.fetchBatch`** threads `dialect` through to the client. On `dialect_all_filters_dropped` returns an empty Map and pushes a warning into the supplied sink — caller treats the FK as unavailable instead of receiving a page-zero row keyed off the wrong ID. Retry budget set to 0; timeout to `companionTimeoutMs`. **CassavaBase trial/program/location FK lookups now actually filter** instead of returning row zero.
+- **`brapi_get_study`** companion probes (`/observations`, `/observationunits`, `/variables`) now use `companionRequestOptions(...)` and route through the dialect. The screenshot-class failure mode is fixed: where v0.4.6 burned ~2 minutes retrying `?studyDbIds=12642` on cassavabase (silently ignored, full table scan), v0.4.7 sends `?studyDbId=12642` (15 s on cassavabase, no retry). Total wall time on the same study drops from ≥120 s to <20 s on the worst path. The companion failure mode also reverts cleanly — when the upstream is genuinely slow the call surfaces a "probe failed" warning instead of pinning the response.
+- **`brapi_submit_observations`** post-write count probe routes through the dialect with the same companion budget. `ApplyBranchSchema` gains an optional `warnings: string[]` field for connection-level diagnostics from the dialect translation.
+- **`BrapiClient.get`** is now `async` so synchronous throws from the dialect adapter (the all-dropped throw) become rejected promises rather than escaping the call stack.
+## Fixed
+- **CassavaBase trial / program / location FK lookups** no longer return wrong rows. Before: `GET /trials?trialDbIds=7526` upstream-ignored, returned `5CP_Kenya / trialDbId 1911`, ReferenceDataCache cached under the wrong key, `getTrials([7526])` returned undefined. After: dialect translates to `?trialDbId=7526`, returns the correct row, FK enrichment lands.
+- **CassavaBase observation count probe** no longer triggers a full table scan that times out. Before: `GET /observations?studyDbIds=X` ≥ 180 s (timeout × 4 retries). After: `GET /observations?studyDbId=X` ~15 s, no retry.
+- **CassavaBase observation-unit count probe** same shape, same fix — singular `studyDbId` honored, plural ignored.
+- **`get_study` response time** on cassavabase drops from ~2 min worst-case (the screenshot) to <20 s when companion endpoints are responsive, or <10 s with a single "probe failed" warning when they aren't. Companion failures no longer pin the main response.
+- **Tests** — `BrapiClient` gains 5 new specs covering dialect translation, warnings sink, all-dropped throw, raw_get passthrough, and retry override. `ReferenceDataCache` gains 3 new specs covering dialect threading, all-dropped graceful degradation, and non-dialect error propagation. `get_study` gains a cassavabase-shape end-to-end spec verifying every companion call reaches the wire as a singular key.

package/dist/config/server-config.d.ts CHANGED Viewed

@@ -24,6 +24,7 @@ declare const ServerConfigSchema: z.ZodObject<{
     retryBaseDelayMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     referenceCacheTtlSeconds: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     requestTimeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
+    companionTimeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     searchPollTimeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     searchPollIntervalMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     allowPrivateIps: z.ZodPipe<z.ZodDefault<z.ZodEnum<{

package/dist/config/server-config.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAG3C,QAAA,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAyGtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,wBAAgB,eAAe,IAAI,YAAY,CAwB9C;AAED,uDAAuD;AACvD,wBAAgB,iBAAiB,IAAI,IAAI,CAExC"}

package/dist/config/server-config.js CHANGED Viewed

@@ -79,6 +79,12 @@ const ServerConfigSchema = z.object({
         .positive()
         .default(30_000)
         .describe('Per-request HTTP timeout.'),
+    companionTimeoutMs: z.coerce
+        .number()
+        .int()
+        .positive()
+        .default(8_000)
+        .describe('Tighter timeout for non-critical companion enrichments (FK lookups, count probes). Companions also bypass the retry budget so a slow upstream surfaces a warning instead of stretching the response by 4×.'),
     searchPollTimeoutMs: z.coerce
         .number()
         .int()
@@ -120,6 +126,7 @@ export function getServerConfig() {
         retryBaseDelayMs: 'BRAPI_RETRY_BASE_DELAY_MS',
         referenceCacheTtlSeconds: 'BRAPI_REFERENCE_CACHE_TTL_SECONDS',
         requestTimeoutMs: 'BRAPI_REQUEST_TIMEOUT_MS',
+        companionTimeoutMs: 'BRAPI_COMPANION_TIMEOUT_MS',
         searchPollTimeoutMs: 'BRAPI_SEARCH_POLL_TIMEOUT_MS',
         searchPollIntervalMs: 'BRAPI_SEARCH_POLL_INTERVAL_MS',
         allowPrivateIps: 'BRAPI_ALLOW_PRIVATE_IPS',

package/dist/config/server-config.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-get-study.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AAkIjE~~,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~GAmPxB~~,CAAC"}
1	+ {"version":3,"file":"brapi-get-study.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-get-study.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAqIjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA8PxB,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js CHANGED Viewed

@@ -8,11 +8,13 @@
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+import { getServerConfig } from '../../../config/server-config.js';
 import { getBrapiClient } from '../../../services/brapi-client/index.js';
+import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
 import { getReferenceDataCache } from '../../../services/reference-data-cache/index.js';
 import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
-import { AliasInput, appendPassthroughLines, buildRequestOptions, extractCoordinates, isUpstreamNotFound, } from '../shared/find-helpers.js';
+import { AliasInput, appendPassthroughLines, buildRequestOptions, companionRequestOptions, extractCoordinates, isUpstreamNotFound, } from '../shared/find-helpers.js';
 const StudySchema = z
     .object({
     studyDbId: z.string().describe('Server-side identifier for the study.'),
@@ -134,13 +136,15 @@ export const brapiGetStudy = tool('brapi_get_study', {
         const capabilities = getCapabilityRegistry();
         const client = getBrapiClient();
         const referenceData = getReferenceDataCache();
+        const config = getServerConfig();
         const connection = await registry.get(ctx, input.alias ?? DEFAULT_ALIAS);
         const capabilityLookup = {};
         if (connection.resolvedAuth)
             capabilityLookup.auth = connection.resolvedAuth;
         await capabilities.ensure(connection.baseUrl, { service: 'studies', method: 'GET' }, ctx, capabilityLookup);
+        const dialect = await resolveDialect(connection, ctx, capabilityLookup);
         const warnings = [];
-        const referenceLookup = {};
+        const referenceLookup = { dialect, warnings };
         if (connection.resolvedAuth)
             referenceLookup.auth = connection.resolvedAuth;
         let studyEnv;
@@ -189,19 +193,23 @@ export const brapiGetStudy = tool('brapi_get_study', {
                     .catch((err) => recordWarning(warnings, 'location FK lookup failed', err))
                 : Promise.resolve(undefined),
             supportsObservations
-                ? fetchTotalCount(client, connection.baseUrl, '/observations', ctx, buildRequestOptions(connection, {
+                ? fetchTotalCount(client, connection.baseUrl, '/observations', ctx, companionRequestOptions(connection, dialect, config, warnings, {
                     studyDbIds: [input.studyDbId],
                     pageSize: 1,
                 })).catch((err) => recordWarning(warnings, 'observation count probe failed', err))
                 : Promise.resolve(undefined),
             supportsObservationUnits
-                ? fetchTotalCount(client, connection.baseUrl, '/observationunits', ctx, buildRequestOptions(connection, {
+                ? fetchTotalCount(client, connection.baseUrl, '/observationunits', ctx, companionRequestOptions(connection, dialect, config, warnings, {
                     studyDbIds: [input.studyDbId],
                     pageSize: 1,
                 })).catch((err) => recordWarning(warnings, 'observation-unit count probe failed', err))
                 : Promise.resolve(undefined),
             supportsVariables
-                ? fetchTotalCount(client, connection.baseUrl, '/variables', ctx, buildRequestOptions(connection, {
+                ? fetchTotalCount(client, connection.baseUrl, '/variables', ctx, companionRequestOptions(connection, dialect, config, warnings, {
+                    // /variables historically responded to singular `studyDbId` on
+                    // SGN deployments — keep the singular here so the dialect (which
+                    // doesn't carry a `variables.studyDbIds → studyDbId` entry) is a
+                    // pass-through, not a silent translation that breaks the probe.
                     studyDbId: input.studyDbId,
                     pageSize: 1,
                 })).catch((err) => recordWarning(warnings, 'variable count probe failed', err))

package/dist/mcp-server/tools/definitions/brapi-get-study.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts CHANGED Viewed

@@ -82,6 +82,7 @@ export declare const brapiSubmitObservations: import("@cyanheads/mcp-ts-core").T
             observationUnitDbId: z.ZodOptional<z.ZodString>;
             warning: z.ZodString;
         }, z.core.$strip>>;
+        warnings: z.ZodOptional<z.ZodArray<z.ZodString>>;
     }, z.core.$strip>], "mode">;
 }, z.core.$strip>, readonly [{
     readonly reason: "observations_unsupported";

package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"brapi-submit-observations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-submit-observations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,EAA2C,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACpF,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AAkOjE~~,eAAO,MAAM,uBAAuB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAsSlC~~,CAAC"}
1	+ {"version":3,"file":"brapi-submit-observations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-submit-observations.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,EAA2C,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACpF,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA2OjE,eAAO,MAAM,uBAAuB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA6SlC,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js CHANGED Viewed

@@ -11,10 +11,12 @@
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+import { getServerConfig } from '../../../config/server-config.js';
 import { getBrapiClient } from '../../../services/brapi-client/index.js';
+import { resolveDialect } from '../../../services/brapi-dialect/index.js';
 import { getCapabilityRegistry } from '../../../services/capability-registry/index.js';
 import { DEFAULT_ALIAS, getServerRegistry } from '../../../services/server-registry/index.js';
-import { AliasInput, buildRequestOptions, extractRows, isUpstreamNotFound, } from '../shared/find-helpers.js';
+import { AliasInput, buildRequestOptions, companionRequestOptions, extractRows, isUpstreamNotFound, } from '../shared/find-helpers.js';
 const ObservationRowSchema = z
     .object({
     observationDbId: z
@@ -150,6 +152,10 @@ const ApplyBranchSchema = z
     perRowWarnings: z
         .array(PerRowWarningSchema)
         .describe('Per-row notes — unknown variables, empty values, missing IDs.'),
+    warnings: z
+        .array(z.string().describe('Connection-level diagnostic note (e.g. dialect translation).'))
+        .optional()
+        .describe('Connection-level notes from companion enrichment — dialect drops, downcasts, FK probe gaps. Empty / absent on the happy path.'),
 })
     .describe('Apply output — writes succeeded, post-state attached.');
 const OutputSchema = z.object({
@@ -228,11 +234,14 @@ export const brapiSubmitObservations = tool('brapi_submit_observations', {
         const registry = getServerRegistry();
         const capabilities = getCapabilityRegistry();
         const client = getBrapiClient();
+        const config = getServerConfig();
         const connection = await registry.get(ctx, input.alias ?? DEFAULT_ALIAS);
         const capabilityLookup = {};
         if (connection.resolvedAuth)
             capabilityLookup.auth = connection.resolvedAuth;
         const profile = await capabilities.profile(connection.baseUrl, ctx, capabilityLookup);
+        const dialect = await resolveDialect(connection, ctx, capabilityLookup);
+        const companionWarnings = [];
         const obsDescriptor = profile.supported.observations;
         const supportsPost = obsDescriptor?.methods?.includes('POST') ?? false;
         const supportsPut = obsDescriptor?.methods?.includes('PUT') ?? false;
@@ -348,7 +357,7 @@ export const brapiSubmitObservations = tool('brapi_submit_observations', {
         const updated = updatedEnv
             ? extractObservationRows(updatedEnv.result).filter((r) => typeof r.observationDbId === 'string')
             : [];
-        const studyObservationCount = await fetchStudyObservationCount(input.studyDbId, connection, client, ctx);
+        const studyObservationCount = await fetchStudyObservationCount(input.studyDbId, connection, dialect, config, companionWarnings, client, ctx);
         const latestTimestamp = pickLatestTimestamp(input.observations);
         const branch = {
             mode: 'apply',
@@ -363,6 +372,8 @@ export const brapiSubmitObservations = tool('brapi_submit_observations', {
             branch.studyObservationCount = studyObservationCount;
         if (latestTimestamp)
             branch.latestObservationTimestamp = latestTimestamp;
+        if (companionWarnings.length > 0)
+            branch.warnings = companionWarnings;
         return { alias: connection.alias, result: branch };
     },
     format: (output) => {
@@ -511,9 +522,12 @@ async function fetchStudyExistence(studyDbId, connection, client, ctx) {
         throw err;
     }
 }
-async function fetchStudyObservationCount(studyDbId, connection, client, ctx) {
+async function fetchStudyObservationCount(studyDbId, connection, dialect, config, warnings, client, ctx) {
     try {
-        const env = await client.get(connection.baseUrl, '/observations', ctx, buildRequestOptions(connection, { studyDbIds: [studyDbId], pageSize: 1 }));
+        const env = await client.get(connection.baseUrl, '/observations', ctx, companionRequestOptions(connection, dialect, config, warnings, {
+            studyDbIds: [studyDbId],
+            pageSize: 1,
+        }));
         const total = env.metadata?.pagination?.totalCount;
         return typeof total === 'number' ? total : undefined;
     }

package/dist/mcp-server/tools/definitions/brapi-submit-observations.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/index.d.ts CHANGED Viewed

@@ -1070,6 +1070,7 @@ export declare const writeToolDefinitions: import("@cyanheads/mcp-ts-core").Tool
             observationUnitDbId: import("zod").ZodOptional<import("zod").ZodString>;
             warning: import("zod").ZodString;
         }, import("zod/v4/core").$strip>>;
+        warnings: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
     }, import("zod/v4/core").$strip>], "mode">;
 }, import("zod/v4/core").$strip>, readonly [{
     readonly reason: "observations_unsupported";

package/dist/mcp-server/tools/definitions/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/index.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAsBH,kEAAkE;AAClE,eAAO,MAAM,uBAAuB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;+CAmBnC,CAAC;AAEF,qEAAqE;AACrE,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KAA4B,CAAC"}

package/dist/mcp-server/tools/shared/find-helpers.d.ts CHANGED Viewed

@@ -70,6 +70,19 @@ export interface ResolveFindRouteInput {
 export declare function resolveFindRoute(input: ResolveFindRouteInput): FindRoute;
 /** Build request options with optional auth. */
 export declare function buildRequestOptions(connection: RegisteredServer, params?: BrapiRequestOptions['params']): BrapiRequestOptions;
+/**
+ * Build request options for a companion enrichment call (FK lookup, count
+ * probe, preflight). Companions are non-critical — they decorate the response
+ * but never gate it — so they get a tighter wall-clock budget and zero
+ * retries: a slow upstream surfaces as a single warning instead of stretching
+ * the response by 4× the per-attempt timeout.
+ *
+ * The dialect is threaded through so the BrapiClient translates plural ID
+ * filters (`studyDbIds`, `trialDbIds`, …) at the wire edge — the v0.4.7 fix
+ * for the foundational dialect-bypass class of bug. Warnings (dialect drops,
+ * downcasts) flow into the same array the tool surfaces in its envelope.
+ */
+export declare function companionRequestOptions(connection: RegisteredServer, dialect: BrapiDialect, config: ServerConfig, warnings: string[], params?: BrapiRequestOptions['params']): BrapiRequestOptions;
 /**
  * Compute a frequency distribution for one field across a result set.
  * Accepts a field accessor that may return a scalar or array; arrays are

package/dist/mcp-server/tools/shared/find-helpers.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"find-helpers.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/shared/find-helpers.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,KAAK,OAAO,EAAE,KAAK,cAAc,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE9E,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AAC9D,OAAO,KAAK,EACV,WAAW,EACX,aAAa,EACb,eAAe,EACf,mBAAmB,EACnB,YAAY,EACb,MAAM,kCAAkC,CAAC;AAC1C,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,mCAAmC,CAAC;AACtE,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,yCAAyC,CAAC;AACjF,OAAO,KAAK,EAEV,eAAe,EACf,YAAY,EACb,MAAM,mCAAmC,CAAC;AAC3C,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,qCAAqC,CAAC;AAE5E,kFAAkF;AAClF,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,OAAO,GAAG,OAAO,CAExD;AAED,iFAAiF;AACjF,eAAO,MAAM,kBAAkB,QAAS,CAAC;AAEzC,+EAA+E;AAC/E,eAAO,MAAM,mBAAmB,KAAK,CAAC;AAEtC,eAAO,MAAM,UAAU,4BAI0E,CAAC;AAElG,eAAO,MAAM,cAAc,4BAOxB,CAAC;AAEJ,eAAO,MAAM,iBAAiB,uDAK3B,CAAC;AAEJ;;;GAGG;AACH,wBAAgB,YAAY,CAC1B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC9B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,SAAS,EAC1C,QAAQ,EAAE,MAAM,EAAE,GACjB,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAiBzB;AAED;;;;;;;;;GASG;AACH,wBAAgB,yBAAyB,CACvC,GAAG,EAAE,cAAc,CAAC,qBAAqB,CAAC,EAC1C,OAAO,EAAE,YAAY,EACrB,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,EAC1C,QAAQ,EAAE,MAAM,EAAE,GACjB,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAezB;AAED,MAAM,MAAM,SAAS,GACjB;IACE,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,IAAI,EAAE,KAAK,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB,GACD;IACE,IAAI,EAAE,QAAQ,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACpC,OAAO,EAAE,MAAM,CAAC;CACjB,CAAC;AAEN,MAAM,WAAW,qBAAqB;IACpC,OAAO,EAAE,YAAY,CAAC;IACtB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,OAAO,EAAE,iBAAiB,CAAC;IAC3B,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACpC,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,qBAAqB,GAAG,SAAS,CAgDxE;AA6BD,gDAAgD;AAChD,wBAAgB,mBAAmB,CACjC,UAAU,EAAE,gBAAgB,EAC5B,MAAM,CAAC,EAAE,mBAAmB,CAAC,QAAQ,CAAC,GACrC,mBAAmB,CAKrB;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,uBAAuB,CACrC,UAAU,EAAE,gBAAgB,EAC5B,OAAO,EAAE,YAAY,EACrB,MAAM,EAAE,YAAY,EACpB,QAAQ,EAAE,MAAM,EAAE,EAClB,MAAM,CAAC,EAAE,mBAAmB,CAAC,QAAQ,CAAC,GACrC,mBAAmB,CAUrB;AAED;;;;GAIG;AACH,wBAAgB,mBAAmB,CAAC,CAAC,EACnC,IAAI,EAAE,SAAS,CAAC,EAAE,EAClB,QAAQ,EAAE,CAAC,GAAG,EAAE,CAAC,KAAK,MAAM,GAAG,SAAS,MAAM,EAAE,GAAG,SAAS,GAAG,IAAI,GAClE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAYxB;AAED;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE;IACrC,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAA;KAAE,GAAG,SAAS,CAAC;CAChE,GAAG,MAAM,CAMT;AAED;;;;;GAKG;AACH,wBAAgB,oBAAoB,CAClC,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAChC,YAAY,GAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAM,GACxC,MAAM,CAUR;AAED,iEAAiE;AACjE,wBAAgB,mBAAmB,CAAC,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,GAAG,MAAM,CAajG;AAED,MAAM,WAAW,UAAU,CAAC,CAAC;IAC3B,iEAAiE;IACjE,OAAO,EAAE,OAAO,CAAC;IACjB,sDAAsD;IACtD,YAAY,EAAE,MAAM,CAAC;IACrB,IAAI,EAAE,CAAC,EAAE,CAAC;IACV,8EAA8E;IAC9E,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED;;;;GAIG;AACH,wBAAsB,eAAe,CAAC,CAAC,EACrC,MAAM,EAAE,WAAW,EACnB,UAAU,EAAE,gBAAgB,EAC5B,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAChC,SAAS,EAAE,MAAM,EACjB,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAQxB;AAED,gFAAgF;AAChF,wBAAsB,mBAAmB,CAAC,CAAC,EACzC,MAAM,EAAE,WAAW,EACnB,UAAU,EAAE,gBAAgB,EAC5B,KAAK,EAAE,SAAS,EAChB,SAAS,EAAE,MAAM,EACjB,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CASxB;AA6CD,MAAM,WAAW,UAAU,CAAC,CAAC;IAC3B,MAAM,EAAE,WAAW,CAAC;IACpB,UAAU,EAAE,gBAAgB,CAAC;IAC7B,GAAG,EAAE,OAAO,CAAC;IACb,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,yDAAyD;IACzD,SAAS,EAAE,CAAC,EAAE,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,mFAAmF;IACnF,KAAK,CAAC,EAAE,SAAS,CAAC;IAClB;;;;;;OAMG;IACH,SAAS,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,KAAK,OAAO,CAAC;IAChC,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,YAAY,CAAC;IACpB,sDAAsD;IACtD,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,WAAW,CAAC,CAAC;IAC5B,OAAO,EAAE,eAAe,CAAC;IACzB,4EAA4E;IAC5E,QAAQ,EAAE,CAAC,EAAE,CAAC;IACd,YAAY,EAAE,MAAM,CAAC;CACtB;AAED;;;;GAIG;AACH,eAAO,MAAM,mBAAmB;;;;;;;;;iBAmB9B,CAAC;AAEH,MAAM,MAAM,aAAa,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AAEhE;;;;;GAKG;AACH,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,aAAa,GAAG,MAAM,EAAE,CAYnE;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,SAAS,EAAE,MAAM,EAAE,GAAG,GAAE,IAAiB,GAAG,MAAM,CAcjF;AAED,kEAAkE;AAClE,wBAAgB,eAAe,CAAC,QAAQ,EAAE,eAAe,GAAG,aAAa,CAYxE;AAED,MAAM,WAAW,eAAe,CAAC,CAAC;IAChC,MAAM,EAAE,WAAW,CAAC;IACpB,UAAU,EAAE,gBAAgB,CAAC;IAC7B,GAAG,EAAE,OAAO,CAAC;IACb,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,SAAS,EAAE,UAAU,CAAC,CAAC,CAAC,CAAC;IACzB,SAAS,EAAE,MAAM,CAAC;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,CAAC,EAAE,SAAS,CAAC;IAClB;;;;OAIG;IACH,SAAS,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,KAAK,OAAO,CAAC;IAChC,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,YAAY,CAAC;CACrB;AAED,MAAM,WAAW,gBAA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package/dist/mcp-server/tools/shared/find-helpers.js CHANGED Viewed

@@ -153,6 +153,31 @@ export function buildRequestOptions(connection, params) {
         opts.params = params;
     return opts;
 }
+/**
+ * Build request options for a companion enrichment call (FK lookup, count
+ * probe, preflight). Companions are non-critical — they decorate the response
+ * but never gate it — so they get a tighter wall-clock budget and zero
+ * retries: a slow upstream surfaces as a single warning instead of stretching
+ * the response by 4× the per-attempt timeout.
+ *
+ * The dialect is threaded through so the BrapiClient translates plural ID
+ * filters (`studyDbIds`, `trialDbIds`, …) at the wire edge — the v0.4.7 fix
+ * for the foundational dialect-bypass class of bug. Warnings (dialect drops,
+ * downcasts) flow into the same array the tool surfaces in its envelope.
+ */
+export function companionRequestOptions(connection, dialect, config, warnings, params) {
+    const opts = {
+        timeoutMs: config.companionTimeoutMs,
+        retryMaxAttempts: 0,
+        dialect,
+        warnings,
+    };
+    if (connection.resolvedAuth)
+        opts.auth = connection.resolvedAuth;
+    if (params)
+        opts.params = params;
+    return opts;
+}
 /**
  * Compute a frequency distribution for one field across a result set.
  * Accepts a field accessor that may return a scalar or array; arrays are