@cyanheads/brapi-mcp-server 0.4.13 → 0.5.0

package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.js

@@ -0,0 +1,233 @@
+/**
+ * @fileoverview `brapi_dataframe_export` — write a dataframe to disk in a
+ * researcher-friendly format (CSV, Parquet, JSON) and return the absolute
+ * path. Hands off the file to the human; the agent doesn't read it back.
+ *
+ * Stdio-only and gated behind `BRAPI_EXPORT_DIR` — the entry point bridges
+ * `BRAPI_EXPORT_DIR` → the framework's `CANVAS_EXPORT_PATH` so the canvas
+ * provider's path-traversal sandbox stays in charge of resolution. Under
+ * `MCP_TRANSPORT_TYPE=http` or with `BRAPI_EXPORT_DIR` unset, the tool is
+ * omitted from `tools/list` entirely (operators see the gate reason on
+ * `/.well-known/mcp.json`).
+ *
+ * Optional `columns` (thin projection) or `sql` (full SELECT) materialize a
+ * temporary canvas table first, export it, then drop it. The dataframe input
+ * always identifies the *source* dataframe — that's the name the paired-drop
+ * cleanup keys off of when `brapi_dataframe_drop` later removes it.
+ *
+ * @module mcp-server/tools/definitions/brapi-dataframe-export.tool
+ */
+import { readdir, stat, unlink } from 'node:fs/promises';
+import { join } from 'node:path';
+import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+import { getServerConfig } from '../../../config/server-config.js';
+import { getCanvasBridge } from '../../../services/canvas-bridge/index.js';
+const ColumnNameSchema = z
+    .string()
+    .regex(/^[A-Za-z_][A-Za-z0-9_]{0,62}$/)
+    .describe('Column name to project — letters, digits, underscores; must start with a letter or underscore; max 63 chars.');
+const InputSchema = z.object({
+    dataframe: z
+        .string()
+        .min(1)
+        .describe('Dataframe to export. Use brapi_dataframe_describe to discover names. Source identity for the export — paired-drop cleanup keys off this name when brapi_dataframe_drop later removes it.'),
+    format: z
+        .enum(['csv', 'parquet', 'json'])
+        .describe('Output format. CSV opens in Excel / Tad; Parquet preserves typed columns and is small on disk; JSON is line-delimited.'),
+    filename: z
+        .string()
+        .min(1)
+        .optional()
+        .describe('Optional filename inside BRAPI_EXPORT_DIR. Path separators ("/", "\\") and ".." segments are rejected. Re-using a name overwrites the existing file. Omit to get a timestamp-suffixed default that never collides.'),
+    columns: z
+        .array(ColumnNameSchema)
+        .min(1)
+        .optional()
+        .describe('Optional thin projection — exports only these columns. Mutually exclusive with `sql`. For filtering or aggregation, run brapi_dataframe_query with registerAs first, then export that derived dataframe.'),
+    sql: z
+        .string()
+        .min(1)
+        .optional()
+        .describe('Optional SELECT statement that defines what to export — same SQL gate as brapi_dataframe_query (SELECT only, single statement, plan-walk allowlist). Mutually exclusive with `columns`. The dataframe input still identifies the source for paired-drop cleanup.'),
+});
+const ColumnInfoSchema = z.object({
+    name: z.string().describe('Column name in projection order.'),
+    type: z.string().describe('SQL/DuckDB column type (VARCHAR, BIGINT, DOUBLE, BOOLEAN, JSON, …).'),
+});
+const OutputSchema = z.object({
+    dataframe: z.string().describe('Source dataframe the export was derived from.'),
+    format: z.enum(['csv', 'parquet', 'json']).describe('Format that was written.'),
+    path: z.string().describe('Absolute path to the export file on the host filesystem.'),
+    filename: z.string().describe('Filename inside BRAPI_EXPORT_DIR (basename only).'),
+    sizeBytes: z.number().int().nonnegative().describe('Bytes written.'),
+    rowCount: z.number().int().nonnegative().describe('Rows written to the file.'),
+    columns: z
+        .array(ColumnInfoSchema.describe('One column descriptor — name and SQL/DuckDB type.'))
+        .describe('Column metadata for the exported file in projection order.'),
+    expiresAt: z
+        .string()
+        .describe('ISO 8601 staleness hint — when the source dataframe will TTL out and any paired sweep will reap this file. The file itself persists on disk independently.'),
+});
+export const brapiDataframeExport = tool('brapi_dataframe_export', {
+    description: 'Export a dataframe to disk (CSV, Parquet, or JSON) under BRAPI_EXPORT_DIR and return the absolute path of a file the human can open in Excel, Tad, DuckDB CLI, etc. Source dataframes are immutable after spillover, so re-exporting the same df_<uuid> is byte-stable. Use `columns` for thin projection or `sql` for filtering/aggregation; for repeated derived views, query with registerAs first then export the derived dataframe.',
+    annotations: { readOnlyHint: false, idempotentHint: false, openWorldHint: false },
+    errors: [
+        {
+            reason: 'export_dir_unset',
+            code: JsonRpcErrorCode.ConfigurationError,
+            when: 'BRAPI_EXPORT_DIR is not configured (defensive — the registration gate normally hides the tool when this happens)',
+            recovery: 'Set BRAPI_EXPORT_DIR on the server before retrying.',
+        },
+        {
+            reason: 'dataframe_not_found',
+            code: JsonRpcErrorCode.NotFound,
+            when: 'No dataframe with this name exists on the canvas (expired, dropped, or typo)',
+            recovery: 'Call brapi_dataframe_describe to list available dataframes.',
+        },
+        {
+            reason: 'invalid_filename',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'filename contains path separators or traversal segments',
+            recovery: 'Provide a filename without "/", "\\", or ".." — leave it unset to use the default.',
+        },
+        {
+            reason: 'mutually_exclusive_projection',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'Both `columns` and `sql` were supplied',
+            recovery: 'Pass either `columns` for a thin projection or `sql` for filtering/aggregation, not both.',
+        },
+    ],
+    input: InputSchema,
+    output: OutputSchema,
+    async handler(input, ctx) {
+        const config = getServerConfig();
+        if (!config.exportDir) {
+            throw ctx.fail('export_dir_unset', undefined, { ...ctx.recoveryFor('export_dir_unset') });
+        }
+        if (input.columns && input.sql) {
+            throw ctx.fail('mutually_exclusive_projection', undefined, {
+                ...ctx.recoveryFor('mutually_exclusive_projection'),
+            });
+        }
+        const filename = resolveFilename(input, ctx);
+        const bridge = getCanvasBridge();
+        const sourceTables = await bridge.describe(ctx, { tableName: input.dataframe });
+        if (sourceTables.length === 0) {
+            throw ctx.fail('dataframe_not_found', `Dataframe "${input.dataframe}" not found.`, {
+                ...ctx.recoveryFor('dataframe_not_found'),
+            });
+        }
+        await sweepStaleExports(config.exportDir, config.datasetTtlSeconds, ctx);
+        const projection = input.columns ?? input.sql;
+        const derivedName = projection !== undefined
+            ? `_brapi_export_${crypto.randomUUID().replace(/-/g, '_')}`
+            : undefined;
+        const tableToExport = derivedName ?? input.dataframe;
+        if (derivedName !== undefined) {
+            const sql = input.sql ?? buildProjectionSql(input.dataframe, input.columns ?? []);
+            await bridge.query(ctx, sql, { registerAs: derivedName, preview: 1 });
+        }
+        let exportResult;
+        let exportedColumns;
+        try {
+            const exportTables = await bridge.describe(ctx, { tableName: tableToExport });
+            exportedColumns = (exportTables[0]?.columns ?? []).map((c) => ({
+                name: c.name,
+                type: c.type,
+            }));
+            exportResult = await bridge.export(ctx, tableToExport, { format: input.format, path: filename }, { signal: ctx.signal });
+            if (exportResult.path) {
+                await bridge.trackExport(ctx, input.dataframe, exportResult.path);
+            }
+        }
+        finally {
+            if (derivedName !== undefined) {
+                try {
+                    await bridge.drop(ctx, derivedName);
+                }
+                catch (err) {
+                    ctx.log.warning('Failed to drop derived export-projection table', {
+                        tableName: derivedName,
+                        error: err instanceof Error ? err.message : String(err),
+                    });
+                }
+            }
+        }
+        return {
+            dataframe: input.dataframe,
+            format: input.format,
+            path: exportResult.path ?? '',
+            filename,
+            sizeBytes: exportResult.sizeBytes,
+            rowCount: exportResult.rowCount,
+            columns: exportedColumns,
+            expiresAt: sourceTables[0]?.provenance?.expiresAt ?? expiresAtFromConfig(config.datasetTtlSeconds),
+        };
+    },
+    format: (result) => [{ type: 'text', text: renderExport(result) }],
+});
+const FILENAME_REJECT = /[/\\]|^\.\.$|\.\.[/\\]|[/\\]\.\./;
+function resolveFilename(input, ctx) {
+    if (input.filename !== undefined) {
+        if (FILENAME_REJECT.test(input.filename) || input.filename === '..') {
+            throw ctx.fail('invalid_filename', `Filename "${input.filename}" is not allowed.`, {
+                ...ctx.recoveryFor('invalid_filename'),
+            });
+        }
+        return input.filename;
+    }
+    return defaultFilename(input.dataframe, input.format);
+}
+function defaultFilename(dataframe, format) {
+    const stamp = Math.floor(Date.now() / 1000);
+    return `${dataframe}-${stamp}.${format}`;
+}
+function buildProjectionSql(dataframe, columns) {
+    return `SELECT ${columns.join(', ')} FROM ${dataframe}`;
+}
+function expiresAtFromConfig(ttlSeconds) {
+    return new Date(Date.now() + ttlSeconds * 1000).toISOString();
+}
+/**
+ * Best-effort sweep of stale export files. Walks `BRAPI_EXPORT_DIR` and
+ * unlinks any regular file with `mtime + ttlSeconds < now`. Errors are
+ * swallowed (including a missing directory — DuckDB's `mkdir` will create
+ * it on first export). Bounded work: typical export directories hold tens
+ * of files at most.
+ */
+async function sweepStaleExports(dir, ttlSeconds, ctx) {
+    try {
+        const entries = await readdir(dir);
+        const cutoff = Date.now() - ttlSeconds * 1000;
+        await Promise.allSettled(entries.map(async (name) => {
+            const path = join(dir, name);
+            try {
+                const info = await stat(path);
+                if (info.isFile() && info.mtimeMs < cutoff)
+                    await unlink(path);
+            }
+            catch {
+                /* file vanished between stat and unlink — fine. */
+            }
+        }));
+    }
+    catch (err) {
+        ctx.log.debug('Export-dir sweep skipped', {
+            dir,
+            error: err instanceof Error ? err.message : String(err),
+        });
+    }
+}
+function renderExport(result) {
+    const lines = [];
+    lines.push(`# Exported \`${result.dataframe}\` → \`${result.filename}\``);
+    lines.push(`- format: ${result.format}`);
+    lines.push(`- path: ${result.path}`);
+    lines.push(`- rows: ${result.rowCount}`);
+    lines.push(`- bytes: ${result.sizeBytes}`);
+    lines.push(`- columns: ${result.columns.map((c) => `${c.name} (${c.type})`).join(', ')}`);
+    lines.push(`- expiresAt: ${result.expiresAt}`);
+    return lines.join('\n');
+}
+//# sourceMappingURL=brapi-dataframe-export.tool.js.map

package/dist/mcp-server/tools/definitions/brapi-dataframe-export.tool.js.map

@@ -0,0 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts

@@ -1,10 +1,20 @@
 /**
  * @fileoverview `brapi_dataframe_query` — execute SQL across in-memory
- * dataframes. Dataframes auto-populate when find_* tools spill to DatasetStore
- * (each becomes `ds_<datasetId>`). Use `registerAs` to materialize a result
- * as a new dataframe — the response carries a bounded `preview` slice plus
- * the full `rowCount`. Read-only enforcement is the framework's three-layer
- * SQL gate (single statement → SELECT only → plan-walk allowlist).
+ * dataframes. Dataframes auto-populate when find_* tools spill (each becomes
+ * `df_<uuid>`). SQL is the primary paging idiom — use `LIMIT/OFFSET` to walk
+ * a large dataframe, projection (`SELECT col1, col2`) to trim rows, and
+ * aggregation (`COUNT`, `GROUP BY`, `AVG`) to summarize without materializing
+ * every row in the LLM context. Use `registerAs` to materialize a result as
+ * a new dataframe — the response carries a bounded `preview` slice plus the
+ * full `rowCount`. Read-only enforcement is the framework's three-layer SQL
+ * gate (single statement → SELECT only → plan-walk allowlist).
+ *
+ * Every query runs under a `registerAs` so DuckDB's describe is the
+ * authoritative type source for the response columns. When the caller
+ * doesn't supply `registerAs`, the handler generates an internal
+ * `_brapi_probe_<uuid>` name, describes the materialized table for types,
+ * then drops it before returning — so types stay consistent with what
+ * `brapi_dataframe_describe` would report.
  *
  * Defaults to a fresh per-tenant default workspace; the agent never passes a
  * canvasId. The bridge resolves it via `ctx.state` so multiple calls in the
@@ -21,15 +31,13 @@ export declare const brapiDataframeQuery: import("@cyanheads/mcp-ts-core").ToolD
     rowLimit: z.ZodOptional<z.ZodNumber>;
 }, z.core.$strip>, z.ZodObject<{
     rowCount: z.ZodNumber;
-    columns: z.ZodArray<z.ZodString>;
+    columns: z.ZodArray<z.ZodObject<{
+        name: z.ZodString;
+        type: z.ZodString;
+    }, z.core.$strip>>;
     rows: z.ZodArray<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
     dataframe: z.ZodOptional<z.ZodString>;
 }, z.core.$strip>, readonly [{
-    readonly reason: "dataframe_disabled";
-    readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: "Dataframe surface is not enabled on this deployment";
-    readonly recovery: "Use brapi_manage_dataset (mode=load) to page rows from the underlying dataset — SQL across dataframes is gated off here.";
-}, {
     readonly reason: "sql_rejected";
     readonly code: JsonRpcErrorCode.ValidationError;
     readonly when: "SQL violated read-only rules (multi-statement, non-SELECT, or disallowed operation)";

package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"brapi-dataframe-query.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-dataframe-query.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAMjD,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAgF3E,eAAO,MAAM,mBAAmB;;;;;;;;;;;;;;;;;;;;GA6D9B,CAAC"}
+{"version":3,"file":"brapi-dataframe-query.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-dataframe-query.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAO/D,OAAO,EAAE,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AA2F3E,eAAO,MAAM,mBAAmB;;;;;;;;;;;;;;;;;;GAmE9B,CAAC"}

package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js

@@ -1,10 +1,20 @@
 /**
  * @fileoverview `brapi_dataframe_query` — execute SQL across in-memory
- * dataframes. Dataframes auto-populate when find_* tools spill to DatasetStore
- * (each becomes `ds_<datasetId>`). Use `registerAs` to materialize a result
- * as a new dataframe — the response carries a bounded `preview` slice plus
- * the full `rowCount`. Read-only enforcement is the framework's three-layer
- * SQL gate (single statement → SELECT only → plan-walk allowlist).
+ * dataframes. Dataframes auto-populate when find_* tools spill (each becomes
+ * `df_<uuid>`). SQL is the primary paging idiom — use `LIMIT/OFFSET` to walk
+ * a large dataframe, projection (`SELECT col1, col2`) to trim rows, and
+ * aggregation (`COUNT`, `GROUP BY`, `AVG`) to summarize without materializing
+ * every row in the LLM context. Use `registerAs` to materialize a result as
+ * a new dataframe — the response carries a bounded `preview` slice plus the
+ * full `rowCount`. Read-only enforcement is the framework's three-layer SQL
+ * gate (single statement → SELECT only → plan-walk allowlist).
+ *
+ * Every query runs under a `registerAs` so DuckDB's describe is the
+ * authoritative type source for the response columns. When the caller
+ * doesn't supply `registerAs`, the handler generates an internal
+ * `_brapi_probe_<uuid>` name, describes the materialized table for types,
+ * then drops it before returning — so types stay consistent with what
+ * `brapi_dataframe_describe` would report.
  *
  * Defaults to a fresh per-tenant default workspace; the agent never passes a
  * canvasId. The bridge resolves it via `ctx.state` so multiple calls in the
@@ -13,7 +23,7 @@
  * @module mcp-server/tools/definitions/brapi-dataframe-query.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
-import { SQL_GATE_REASONS, } from '@cyanheads/mcp-ts-core/canvas';
+import { inferSchemaFromRows, SQL_GATE_REASONS, } from '@cyanheads/mcp-ts-core/canvas';
 import { JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
 import { getCanvasBridge } from '../../../services/canvas-bridge/index.js';
 /**
@@ -38,7 +48,7 @@ const InputSchema = z.object({
     sql: z
         .string()
         .min(1)
-        .describe('SELECT statement against dataframes. Single statement only — writes, DDL, file reads, and exports are rejected. Use brapi_dataframe_describe to discover available dataframes.'),
+        .describe('SELECT statement against dataframes. Single statement only — writes, DDL, file reads, and exports are rejected. Use brapi_dataframe_describe to discover available dataframes. SQL is the primary paging idiom: use `LIMIT/OFFSET` to walk a large dataframe, projection to trim columns, and aggregation (`COUNT`, `GROUP BY`, `AVG`) to summarize without materializing every row.'),
     registerAs: z
         .string()
         .regex(/^[A-Za-z_][A-Za-z0-9_]{0,62}$/)
@@ -58,6 +68,12 @@ const InputSchema = z.object({
         .optional()
         .describe('Hard cap on rows materialized into the response, bounded by the deployment-wide response cap. For larger result sets, use `registerAs` to keep the full result queryable instead of raising this.'),
 });
+const ColumnInfoSchema = z.object({
+    name: z.string().describe('Column name in projection order.'),
+    type: z
+        .string()
+        .describe('SQL/DuckDB column type (e.g. VARCHAR, BIGINT, DOUBLE, BOOLEAN, JSON) sourced from DuckDB schema metadata. The same type appears whether or not `registerAs` was supplied — without it, the handler runs an internal probe to recover authoritative types that would otherwise be lost when DuckDB BigInts serialize to JSON strings.'),
+});
 const OutputSchema = z.object({
     rowCount: z
         .number()
@@ -65,8 +81,8 @@ const OutputSchema = z.object({
         .nonnegative()
         .describe('Total rows the query produced (may exceed `rows.length` when capped).'),
     columns: z
-        .array(z.string().describe('Column name in projection order.'))
-        .describe('Column names in projection order.'),
+        .array(ColumnInfoSchema.describe('One column descriptor — name and SQL/DuckDB type.'))
+        .describe('Column metadata in projection order — name and SQL type. Use this to write follow-up queries without round-tripping through brapi_dataframe_describe.'),
     rows: z
         .array(z
         .record(z.string(), z.unknown())
@@ -78,15 +94,9 @@ const OutputSchema = z.object({
         .describe('Name of the dataframe holding the full result, populated when `registerAs` was supplied. Reference this name in follow-up queries.'),
 });
 export const brapiDataframeQuery = tool('brapi_dataframe_query', {
-    description: 'Run SQL across in-memory dataframes. Dataframes auto-populate when find_* tools spill (named `ds_<datasetId>`); list them via brapi_dataframe_describe. SELECT only — writes/DDL/COPY/PRAGMA/ATTACH/file-reads are rejected. Use `registerAs` to chain — the result lands as a new dataframe.',
+    description: 'Run SQL across in-memory dataframes. Dataframes auto-populate when find_* tools spill (named `df_<uuid>`); list them via brapi_dataframe_describe. SELECT only — writes/DDL/COPY/PRAGMA/ATTACH/file-reads are rejected. Use SQL as the paging idiom: `LIMIT/OFFSET` to walk results, projection to trim columns, aggregation to summarize. Use `registerAs` to chain — the result lands as a new dataframe.',
     annotations: { readOnlyHint: false, idempotentHint: false, openWorldHint: false },
     errors: [
-        {
-            reason: 'dataframe_disabled',
-            code: JsonRpcErrorCode.ServiceUnavailable,
-            when: 'Dataframe surface is not enabled on this deployment',
-            recovery: 'Use brapi_manage_dataset (mode=load) to page rows from the underlying dataset — SQL across dataframes is gated off here.',
-        },
         {
             reason: 'sql_rejected',
             code: JsonRpcErrorCode.ValidationError,
@@ -98,14 +108,13 @@ export const brapiDataframeQuery = tool('brapi_dataframe_query', {
     output: OutputSchema,
     async handler(input, ctx) {
         const bridge = getCanvasBridge();
-        if (!bridge.isEnabled()) {
-            throw ctx.fail('dataframe_disabled', 'brapi_dataframe_query is unavailable — dataframes are not enabled on this deployment.', { ...ctx.recoveryFor('dataframe_disabled') });
-        }
-        const queryOpts = {};
+        const userRegisterAs = input.registerAs;
+        const probeName = userRegisterAs ?? `_brapi_probe_${crypto.randomUUID().replace(/-/g, '_')}`;
+        const queryOpts = {
+            registerAs: probeName,
+        };
         if (input.preview !== undefined)
             queryOpts.preview = input.preview;
-        if (input.registerAs !== undefined)
-            queryOpts.registerAs = input.registerAs;
         if (input.rowLimit !== undefined)
             queryOpts.rowLimit = input.rowLimit;
         let result;
@@ -119,22 +128,65 @@ export const brapiDataframeQuery = tool('brapi_dataframe_query', {
             const message = err instanceof Error ? err.message : 'Query rejected.';
             throw ctx.fail('sql_rejected', message, { gateReason, ...ctx.recoveryFor('sql_rejected') }, { cause: err });
         }
+        let typedColumns;
+        try {
+            typedColumns = await resolveTypedColumns(bridge, ctx, result, probeName);
+        }
+        finally {
+            if (userRegisterAs === undefined) {
+                try {
+                    await bridge.drop(ctx, probeName);
+                }
+                catch (err) {
+                    ctx.log.warning('Failed to drop ephemeral type-probe table', {
+                        tableName: probeName,
+                        error: err instanceof Error ? err.message : String(err),
+                    });
+                }
+            }
+        }
         const out = {
             rowCount: result.rowCount,
-            columns: result.columns,
+            columns: typedColumns,
             rows: result.rows,
         };
-        if (result.tableName !== undefined)
-            out.dataframe = result.tableName;
+        if (userRegisterAs !== undefined)
+            out.dataframe = userRegisterAs;
         return out;
     },
     format: (result) => [{ type: 'text', text: renderQuery(result) }],
 });
+/**
+ * Build typed column metadata for the response. The handler always runs the
+ * query under a `registerAs` (caller-supplied or an internal `_brapi_probe_*`
+ * temp name), so DuckDB's `describe()` is the authoritative type source —
+ * it preserves BIGINT, DOUBLE, TIMESTAMP, and DECIMAL through the round-trip
+ * that JSON serialization would otherwise flatten to VARCHAR. Falls through
+ * to row inference only when describe can't see the table (test fakes that
+ * don't honor `registerAs`) and finally to UNKNOWN for empty results.
+ */
+async function resolveTypedColumns(bridge, ctx, result, tableName) {
+    const tables = await bridge.describe(ctx, { tableName });
+    const described = tables[0];
+    if (described && described.columns.length > 0) {
+        return described.columns.map((c) => ({ name: c.name, type: c.type }));
+    }
+    if (result.rows.length > 0) {
+        const inferred = inferSchemaFromRows(result.rows);
+        const byName = new Map(inferred.map((c) => [c.name, c.type]));
+        return result.columns.map((name) => ({
+            name,
+            type: byName.get(name) ?? 'VARCHAR',
+        }));
+    }
+    return result.columns.map((name) => ({ name, type: 'UNKNOWN' }));
+}
 function renderQuery(result) {
     const lines = [];
     const tableHint = result.dataframe ? ` · registered as \`${result.dataframe}\`` : '';
     lines.push(`# ${result.rowCount} row(s)${tableHint}`);
-    lines.push(`- columns: ${result.columns.join(', ')}`);
+    const columnList = result.columns.map((c) => `${c.name} (${c.type})`).join(', ');
+    lines.push(`- columns: ${columnList}`);
     lines.push(`- returned: ${result.rows.length}`);
     if (result.rows.length === 0) {
         lines.push('');
@@ -147,11 +199,11 @@ function renderQuery(result) {
         lines.push('');
         lines.push(`### Row ${i + 1}`);
         for (const col of result.columns) {
-            const value = row[col];
+            const value = row[col.name];
             if (value === undefined || value === null)
                 continue;
             const rendered = typeof value === 'object' ? JSON.stringify(value) : String(value);
-            lines.push(`- **${col}:** ${rendered}`);
+            lines.push(`- **${col.name}:** ${rendered}`);
         }
     }
     return lines.join('\n');

package/dist/mcp-server/tools/definitions/brapi-dataframe-query.tool.js.map

@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts

@@ -6,8 +6,8 @@
  * (operator policy, default 100k, max 500k) so a single query can't trigger
  * unbounded sequential paginated GETs against the upstream BrAPI server.
  * `loadLimit` bounds the rows returned inline; when the pull exceeds
- * loadLimit, the full collected set spills to DatasetStore for paged
- * follow-up.
+ * loadLimit, the full collected set is materialized as a dataframe
+ * for SQL-based follow-up.
  *
  * @module mcp-server/tools/definitions/brapi-find-genotype-calls.tool
  */
@@ -55,16 +55,14 @@ export declare const brapiFindGenotypeCalls: import("@cyanheads/mcp-ts-core").To
         variantName: z.ZodRecord<z.ZodString, z.ZodNumber>;
         variantSetDbId: z.ZodRecord<z.ZodString, z.ZodNumber>;
     }, z.core.$strip>;
-    dataset: z.ZodOptional<z.ZodObject<{
-        datasetId: z.ZodString;
+    dataframe: z.ZodOptional<z.ZodObject<{
+        tableName: z.ZodString;
         rowCount: z.ZodNumber;
-        sizeBytes: z.ZodNumber;
         columns: z.ZodArray<z.ZodString>;
         createdAt: z.ZodString;
         expiresAt: z.ZodString;
         truncated: z.ZodOptional<z.ZodBoolean>;
         maxRows: z.ZodOptional<z.ZodNumber>;
-        dataframe: z.ZodOptional<z.ZodString>;
     }, z.core.$strip>>;
     truncated: z.ZodBoolean;
     warnings: z.ZodArray<z.ZodString>;

package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts.map

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+{"version":3,"file":"brapi-find-genotype-calls.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAsB,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA8HjE,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAsNjC,CAAC"}