@cyanheads/brapi-mcp-server 0.4.13 → 0.5.0

package/dist/services/dataset-store/dataset-store.d.ts

@@ -1,44 +0,0 @@
-/**
- * @fileoverview Tenant-scoped dataset lifecycle. Stores metadata and row
- * payloads in `ctx.state` with TTL from `BRAPI_DATASET_TTL_SECONDS`. Datasets
- * back the `brapi_manage_dataset` tool (list/summary/load/delete) and act as
- * the spillover target for `find_*` tools when result sets exceed
- * `BRAPI_LOAD_LIMIT`. Provenance (source, baseUrl, query) is mandatory on
- * create — research workflows require reproducibility.
- *
- * When the optional `CanvasBridge` is wired in, `create()` auto-registers
- * the row payload as a SQL-queryable table and `delete()` drops it again.
- * Failures in either path log a warning but never break the dataset op —
- * the canvas surface is an enrichment, not a precondition.
- *
- * @module services/dataset-store/dataset-store
- */
-import type { Context } from '@cyanheads/mcp-ts-core';
-import type { ServerConfig } from '../../config/server-config.js';
-import type { CanvasBridge } from '../../services/canvas-bridge/index.js';
-import type { CreateDatasetInput, DatasetListOptions, DatasetListPage, DatasetLoadOptions, DatasetMetadata, DatasetPage } from './types.js';
-export declare class DatasetStore {
-    private readonly serverConfig;
-    private readonly canvasBridge?;
-    constructor(serverConfig: ServerConfig, canvasBridge?: CanvasBridge | undefined);
-    /**
-     * Persist a new dataset and return its metadata. Rows and metadata are
-     * written under separate keys so `summary` / `list` can avoid paying the
-     * row-payload read cost. When the canvas-bridge is wired and enabled,
-     * the rows are auto-registered as a SQL-queryable canvas table; failure
-     * there only logs a warning.
-     */
-    create(ctx: Context, input: CreateDatasetInput): Promise<DatasetMetadata>;
-    /** Return just the metadata for a dataset. Throws `NotFound` when missing. */
-    summary(ctx: Context, datasetId: string): Promise<DatasetMetadata>;
-    /** Return a paginated slice of rows, optionally projected to a subset of columns. */
-    load(ctx: Context, datasetId: string, options?: DatasetLoadOptions): Promise<DatasetPage>;
-    /** Enumerate datasets for this tenant, paginated via opaque cursor. */
-    list(ctx: Context, options?: DatasetListOptions): Promise<DatasetListPage>;
-    /** Delete a dataset's metadata and row payload. Idempotent. */
-    delete(ctx: Context, datasetId: string): Promise<void>;
-}
-export declare function initDatasetStore(serverConfig: ServerConfig, canvasBridge?: CanvasBridge | undefined): void;
-export declare function getDatasetStore(): DatasetStore;
-export declare function resetDatasetStore(): void;
-//# sourceMappingURL=dataset-store.d.ts.map

package/dist/services/dataset-store/dataset-store.d.ts.map

@@ -1 +0,0 @@
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package/dist/services/dataset-store/dataset-store.js

@@ -1,208 +0,0 @@
-/**
- * @fileoverview Tenant-scoped dataset lifecycle. Stores metadata and row
- * payloads in `ctx.state` with TTL from `BRAPI_DATASET_TTL_SECONDS`. Datasets
- * back the `brapi_manage_dataset` tool (list/summary/load/delete) and act as
- * the spillover target for `find_*` tools when result sets exceed
- * `BRAPI_LOAD_LIMIT`. Provenance (source, baseUrl, query) is mandatory on
- * create — research workflows require reproducibility.
- *
- * When the optional `CanvasBridge` is wired in, `create()` auto-registers
- * the row payload as a SQL-queryable table and `delete()` drops it again.
- * Failures in either path log a warning but never break the dataset op —
- * the canvas surface is an enrichment, not a precondition.
- *
- * @module services/dataset-store/dataset-store
- */
-import { notFound, validationError } from '@cyanheads/mcp-ts-core/errors';
-const META_PREFIX = 'brapi/ds/meta/';
-const ROWS_PREFIX = 'brapi/ds/rows/';
-const DEFAULT_PAGE_SIZE = 100;
-const MAX_PAGE_SIZE = 1_000;
-export class DatasetStore {
-    serverConfig;
-    canvasBridge;
-    constructor(serverConfig, canvasBridge) {
-        this.serverConfig = serverConfig;
-        this.canvasBridge = canvasBridge;
-    }
-    /**
-     * Persist a new dataset and return its metadata. Rows and metadata are
-     * written under separate keys so `summary` / `list` can avoid paying the
-     * row-payload read cost. When the canvas-bridge is wired and enabled,
-     * the rows are auto-registered as a SQL-queryable canvas table; failure
-     * there only logs a warning.
-     */
-    async create(ctx, input) {
-        if (!input.source)
-            throw validationError('Dataset source is required.');
-        if (!input.baseUrl)
-            throw validationError('Dataset baseUrl is required.');
-        const datasetId = crypto.randomUUID();
-        const columns = input.columns?.length ? [...input.columns] : inferColumns(input.rows);
-        const payloadJson = JSON.stringify(input.rows);
-        const sizeBytes = byteLength(payloadJson);
-        const ttl = this.serverConfig.datasetTtlSeconds;
-        const now = new Date();
-        const expiresAt = new Date(now.getTime() + ttl * 1000);
-        const metadata = {
-            datasetId,
-            source: input.source,
-            baseUrl: input.baseUrl,
-            query: input.query,
-            rowCount: input.rows.length,
-            columns,
-            sizeBytes,
-            createdAt: now.toISOString(),
-            expiresAt: expiresAt.toISOString(),
-        };
-        if (input.truncated)
-            metadata.truncated = true;
-        if (typeof input.maxRows === 'number')
-            metadata.maxRows = input.maxRows;
-        // Auto-register on the canvas first so the persisted metadata can carry
-        // the dataframe name. Best-effort: a failed registration logs a warning
-        // inside the bridge and returns { registered: false }, leaving
-        // `dataframe` absent on the dataset.
-        const registration = await this.canvasBridge?.registerDataset(ctx, metadata, input.rows);
-        if (registration?.registered && registration.tableName) {
-            metadata.dataframe = registration.tableName;
-        }
-        await Promise.all([
-            ctx.state.set(metaKey(datasetId), metadata, { ttl }),
-            ctx.state.set(rowsKey(datasetId), input.rows, { ttl }),
-        ]);
-        return metadata;
-    }
-    /** Return just the metadata for a dataset. Throws `NotFound` when missing. */
-    async summary(ctx, datasetId) {
-        const meta = await ctx.state.get(metaKey(datasetId));
-        if (!meta) {
-            throw notFound(`Dataset ${datasetId} not found or expired.`, {
-                datasetId,
-                reason: 'dataset_not_found',
-                ...ctx.recoveryFor('dataset_not_found'),
-            });
-        }
-        return meta;
-    }
-    /** Return a paginated slice of rows, optionally projected to a subset of columns. */
-    async load(ctx, datasetId, options = {}) {
-        const meta = await this.summary(ctx, datasetId);
-        const rows = await ctx.state.get(rowsKey(datasetId));
-        if (!rows) {
-            throw notFound(`Dataset ${datasetId} metadata exists but rows are missing (storage inconsistency or partial expiry).`, {
-                datasetId,
-                reason: 'dataset_rows_missing',
-                ...ctx.recoveryFor('dataset_rows_missing'),
-            });
-        }
-        const pageSize = clampPageSize(options.pageSize);
-        const page = Math.max(1, options.page ?? 1);
-        const totalRows = rows.length;
-        const totalPages = Math.max(1, Math.ceil(totalRows / pageSize));
-        if (page > totalPages && totalRows > 0) {
-            throw validationError(`Dataset ${datasetId} has ${totalPages} page(s) at pageSize=${pageSize}; requested page ${page} is out of range.`, { datasetId, requestedPage: page, totalPages });
-        }
-        const start = (page - 1) * pageSize;
-        const end = start + pageSize;
-        const slice = rows.slice(start, end);
-        if (options.columns?.length) {
-            validateColumns(options.columns, meta.columns);
-        }
-        return {
-            datasetId,
-            rows: options.columns?.length ? projectColumns(slice, options.columns) : slice,
-            page,
-            pageSize,
-            totalRows,
-            totalPages,
-        };
-    }
-    /** Enumerate datasets for this tenant, paginated via opaque cursor. */
-    async list(ctx, options = {}) {
-        const listOpts = {
-            limit: options.limit ?? 50,
-        };
-        if (options.cursor !== undefined)
-            listOpts.cursor = options.cursor;
-        const page = await ctx.state.list(META_PREFIX, listOpts);
-        const datasets = [];
-        for (const item of page.items) {
-            if (isDatasetMetadata(item.value))
-                datasets.push(item.value);
-        }
-        const result = { datasets };
-        if (page.cursor !== undefined)
-            result.cursor = page.cursor;
-        return result;
-    }
-    /** Delete a dataset's metadata and row payload. Idempotent. */
-    async delete(ctx, datasetId) {
-        await ctx.state.deleteMany([metaKey(datasetId), rowsKey(datasetId)]);
-        await this.canvasBridge?.dropDataset(ctx, datasetId);
-    }
-}
-function metaKey(id) {
-    return `${META_PREFIX}${id}`;
-}
-function rowsKey(id) {
-    return `${ROWS_PREFIX}${id}`;
-}
-function inferColumns(rows) {
-    const seen = new Set();
-    for (const row of rows) {
-        for (const key of Object.keys(row))
-            seen.add(key);
-        if (seen.size > 256)
-            break;
-    }
-    return Array.from(seen);
-}
-function projectColumns(rows, columns) {
-    return rows.map((row) => {
-        const projected = {};
-        for (const col of columns) {
-            if (col in row)
-                projected[col] = row[col];
-        }
-        return projected;
-    });
-}
-function validateColumns(requested, available) {
-    const availableSet = new Set(available);
-    const unknown = requested.filter((c) => !availableSet.has(c));
-    if (unknown.length > 0) {
-        throw validationError(`Unknown column(s): ${unknown.join(', ')}. Available columns: ${available.join(', ')}.`, { unknownColumns: unknown, availableColumns: available });
-    }
-}
-function clampPageSize(value) {
-    if (typeof value !== 'number' || !Number.isFinite(value) || value <= 0) {
-        return DEFAULT_PAGE_SIZE;
-    }
-    return Math.min(Math.floor(value), MAX_PAGE_SIZE);
-}
-function byteLength(value) {
-    if (typeof Buffer !== 'undefined')
-        return Buffer.byteLength(value, 'utf8');
-    return new TextEncoder().encode(value).byteLength;
-}
-function isDatasetMetadata(value) {
-    return (typeof value === 'object' &&
-        value !== null &&
-        'datasetId' in value &&
-        typeof value.datasetId === 'string');
-}
-let _store;
-export function initDatasetStore(serverConfig, canvasBridge) {
-    _store = new DatasetStore(serverConfig, canvasBridge);
-}
-export function getDatasetStore() {
-    if (!_store) {
-        throw new Error('DatasetStore not initialized — call initDatasetStore() in setup()');
-    }
-    return _store;
-}
-export function resetDatasetStore() {
-    _store = undefined;
-}
-//# sourceMappingURL=dataset-store.js.map

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package/dist/services/dataset-store/index.d.ts

@@ -1,8 +0,0 @@
-/**
- * @fileoverview Public API barrel for the DatasetStore service.
- *
- * @module services/dataset-store
- */
-export { DatasetStore, getDatasetStore, initDatasetStore, resetDatasetStore, } from './dataset-store.js';
-export type { CreateDatasetInput, DatasetListOptions, DatasetListPage, DatasetLoadOptions, DatasetMetadata, DatasetPage, } from './types.js';
-//# sourceMappingURL=index.d.ts.map

package/dist/services/dataset-store/index.d.ts.map

@@ -1 +0,0 @@
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package/dist/services/dataset-store/index.js

@@ -1,7 +0,0 @@
-/**
- * @fileoverview Public API barrel for the DatasetStore service.
- *
- * @module services/dataset-store
- */
-export { DatasetStore, getDatasetStore, initDatasetStore, resetDatasetStore, } from './dataset-store.js';
-//# sourceMappingURL=index.js.map

package/dist/services/dataset-store/index.js.map

@@ -1 +0,0 @@
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package/dist/services/dataset-store/types.d.ts

@@ -1,72 +0,0 @@
-/**
- * @fileoverview Dataset lifecycle types — provenance, metadata, paginated
- * load responses. All JSON-serializable so they round-trip through `ctx.state`.
- *
- * @module services/dataset-store/types
- */
-export interface CreateDatasetInput {
-    /** BrAPI base URL the dataset was pulled from. */
-    baseUrl: string;
-    /** Optional column list; inferred from the first row when omitted. */
-    columns?: string[];
-    /** Cap the producer applied — number of rows that would have been pulled without truncation. Omit when no cap was applied. */
-    maxRows?: number;
-    /** Full query params / filter map — required for reproducibility. */
-    query: unknown;
-    /** Row payload. */
-    rows: Record<string, unknown>[];
-    /** Original tool / operation that produced the dataset (e.g. 'find_studies'). */
-    source: string;
-    /** True when the producer hit a cap before exhausting the upstream result set. */
-    truncated?: boolean;
-}
-export interface DatasetMetadata {
-    baseUrl: string;
-    columns: string[];
-    /** ISO 8601 create timestamp. */
-    createdAt: string;
-    /**
-     * Dataframe name when the dataset was auto-registered as a SQL-queryable
-     * dataframe (`ds_<datasetId_with_underscores>`). Omitted when the dataframe
-     * surface is disabled or registration failed. Use with
-     * `brapi_dataframe_query` to run SQL across the rows.
-     */
-    dataframe?: string;
-    datasetId: string;
-    /** ISO 8601 expiry — when the TTL will evict the dataset. */
-    expiresAt: string;
-    /** Cap that was applied at create time. Omitted when none. */
-    maxRows?: number;
-    query: unknown;
-    rowCount: number;
-    /** Serialized payload size in bytes (UTF-8 JSON). */
-    sizeBytes: number;
-    source: string;
-    /** True when the dataset rows were capped before exhausting upstream. */
-    truncated?: boolean;
-}
-export interface DatasetLoadOptions {
-    /** Subset of columns to return. Omitted → all columns. */
-    columns?: string[];
-    /** 1-indexed page number. Default 1. */
-    page?: number;
-    /** Rows per page. Default 100, max 1000. */
-    pageSize?: number;
-}
-export interface DatasetPage {
-    datasetId: string;
-    page: number;
-    pageSize: number;
-    rows: Record<string, unknown>[];
-    totalPages: number;
-    totalRows: number;
-}
-export interface DatasetListOptions {
-    cursor?: string;
-    limit?: number;
-}
-export interface DatasetListPage {
-    cursor?: string;
-    datasets: DatasetMetadata[];
-}
-//# sourceMappingURL=types.d.ts.map

package/dist/services/dataset-store/types.d.ts.map

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package/dist/services/dataset-store/types.js

@@ -1,8 +0,0 @@
-/**
- * @fileoverview Dataset lifecycle types — provenance, metadata, paginated
- * load responses. All JSON-serializable so they round-trip through `ctx.state`.
- *
- * @module services/dataset-store/types
- */
-export {};
-//# sourceMappingURL=types.js.map

package/dist/services/dataset-store/types.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/services/dataset-store/types.ts"],"names":[],"mappings":"AAAA;;;;;GAKG"}