@cyanheads/brapi-mcp-server 0.4.1 → 0.4.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CLAUDE.md +1 -1
- package/README.md +1 -1
- package/changelog/0.4.x/0.4.2.md +23 -0
- package/changelog/0.4.x/0.4.3.md +27 -0
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.d.ts +14 -14
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js +13 -13
- package/dist/mcp-server/tools/definitions/brapi-find-genotype-calls.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js +32 -19
- package/dist/mcp-server/tools/definitions/brapi-find-germplasm.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts +16 -16
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js +19 -17
- package/dist/mcp-server/tools/definitions/brapi-find-images.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts +20 -20
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js +74 -32
- package/dist/mcp-server/tools/definitions/brapi-find-observations.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js +4 -1
- package/dist/mcp-server/tools/definitions/brapi-find-studies.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variables.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.d.ts +3 -3
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js +3 -3
- package/dist/mcp-server/tools/definitions/brapi-find-variants.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js +53 -5
- package/dist/mcp-server/tools/definitions/brapi-get-germplasm.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/index.d.ts +53 -53
- package/dist/mcp-server/tools/shared/find-helpers.d.ts +33 -2
- package/dist/mcp-server/tools/shared/find-helpers.d.ts.map +1 -1
- package/dist/mcp-server/tools/shared/find-helpers.js +55 -8
- package/dist/mcp-server/tools/shared/find-helpers.js.map +1 -1
- package/dist/services/brapi-dialect/cassavabase-dialect.d.ts.map +1 -1
- package/dist/services/brapi-dialect/cassavabase-dialect.js +6 -3
- package/dist/services/brapi-dialect/cassavabase-dialect.js.map +1 -1
- package/package.json +1 -1
- package/server.json +3 -3
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"cassavabase-dialect.d.ts","sourceRoot":"","sources":["../../../src/services/brapi-dialect/cassavabase-dialect.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AAEH,OAAO,KAAK,EAAE,YAAY,EAAqB,MAAM,YAAY,CAAC;
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+
{"version":3,"file":"cassavabase-dialect.d.ts","sourceRoot":"","sources":["../../../src/services/brapi-dialect/cassavabase-dialect.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AAEH,OAAO,KAAK,EAAE,YAAY,EAAqB,MAAM,YAAY,CAAC;AA6IlE,eAAO,MAAM,kBAAkB,EAAE,YAqChC,CAAC"}
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@@ -43,7 +43,6 @@ const PLURAL_TO_SINGULAR = {
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programNames: 'programName',
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trialDbIds: 'trialDbId', // observed: works
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trialNames: 'trialName',
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-
locationDbIds: 'locationDbId',
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locationNames: 'locationName',
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seasonDbIds: 'seasonDbId', // observed: works
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studyDbIds: 'studyDbId',
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@@ -123,10 +122,14 @@ const PLURAL_TO_SINGULAR = {
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* Filters CassavaBase silently ignores entirely — drop them from the wire and
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* surface a warning so the agent stops trusting the response as if the filter
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* were honored. `searchText` is a non-spec extension we invented earlier;
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* no SGN-family server recognizes it.
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* no SGN-family server recognizes it. `locationDbIds` (and the singular
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* `locationDbId`) on `/studies` was empirically verified to leak: requesting
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* `locationDbId=3` still returned studies for other locations (Mokwa, Zaria).
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* Until we have a working alternative, narrow location-wise post-fetch via
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* `locationName` distribution or a follow-up `brapi_get_study` call.
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*/
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const DROPPED_FILTERS = {
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studies: new Set(['searchText']),
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studies: new Set(['searchText', 'locationDbIds', 'locationDbId']),
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germplasm: new Set(['searchText']),
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};
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const EMPTY_DROP_SET = new Set();
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@@ -1 +1 @@
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-
{"version":3,"file":"cassavabase-dialect.js","sourceRoot":"","sources":["../../../src/services/brapi-dialect/cassavabase-dialect.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AAIH;;;;;;;;;;;GAWG;AACH,MAAM,kBAAkB,GAAqD;IAC3E,OAAO,EAAE;QACP,eAAe,EAAE,gBAAgB,EAAE,kBAAkB;QACrD,UAAU,EAAE,WAAW;QACvB,YAAY,EAAE,aAAa,EAAE,kBAAkB;QAC/C,YAAY,EAAE,aAAa;QAC3B,UAAU,EAAE,WAAW,EAAE,kBAAkB;QAC3C,UAAU,EAAE,WAAW;QACvB,aAAa,EAAE,cAAc;QAC7B,
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1
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+
{"version":3,"file":"cassavabase-dialect.js","sourceRoot":"","sources":["../../../src/services/brapi-dialect/cassavabase-dialect.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AAIH;;;;;;;;;;;GAWG;AACH,MAAM,kBAAkB,GAAqD;IAC3E,OAAO,EAAE;QACP,eAAe,EAAE,gBAAgB,EAAE,kBAAkB;QACrD,UAAU,EAAE,WAAW;QACvB,YAAY,EAAE,aAAa,EAAE,kBAAkB;QAC/C,YAAY,EAAE,aAAa;QAC3B,UAAU,EAAE,WAAW,EAAE,kBAAkB;QAC3C,UAAU,EAAE,WAAW;QACvB,aAAa,EAAE,cAAc;QAC7B,WAAW,EAAE,YAAY,EAAE,kBAAkB;QAC7C,UAAU,EAAE,WAAW;QACvB,UAAU,EAAE,WAAW;QACvB,UAAU,EAAE,WAAW;QACvB,SAAS,EAAE,UAAU;QACrB,oBAAoB,EAAE,qBAAqB;QAC3C,wBAAwB,EAAE,yBAAyB;KACpD;IACD,SAAS,EAAE;QACT,eAAe,EAAE,gBAAgB;QACjC,cAAc,EAAE,eAAe;QAC/B,cAAc,EAAE,eAAe;QAC/B,aAAa,EAAE,cAAc;QAC7B,gBAAgB,EAAE,iBAAiB;QACnC,WAAW,EAAE,YAAY;QACzB,QAAQ,EAAE,SAAS;QACnB,YAAY,EAAE,aAAa;QAC3B,UAAU,EAAE,WAAW;QACvB,UAAU,EAAE,WAAW;QACvB,oBAAoB,EAAE,qBAAqB;KAC5C;IACD,YAAY,EAAE;QACZ,UAAU,EAAE,WAAW,EAAE,kBAAkB;QAC3C,cAAc,EAAE,eAAe;QAC/B,wBAAwB,EAAE,yBAAyB;QACnD,oBAAoB,EAAE,qBAAqB;QAC3C,gBAAgB,EAAE,iBAAiB;QACnC,WAAW,EAAE,YAAY;QACzB,YAAY,EAAE,aAAa;QAC3B,UAAU,EAAE,WAAW;QACvB,iBAAiB,EAAE,kBAAkB;KACtC;IACD,SAAS,EAAE;QACT,aAAa,EAAE,cAAc;QAC7B,aAAa,EAAE,cAAc;QAC7B,YAAY,EAAE,aAAa;QAC3B,aAAa,EAAE,cAAc;QAC7B,aAAa,EAAE,cAAc;KAC9B;IACD,SAAS,EAAE;QACT,wBAAwB,EAAE,yBAAyB;QACnD,wBAAwB,EAAE,yBAAyB;QACnD,uBAAuB,EAAE,wBAAwB;QACjD,YAAY,EAAE,YAAY;QAC1B,WAAW,EAAE,YAAY;QACzB,UAAU,EAAE,WAAW;QACvB,aAAa,EAAE,cAAc;KAC9B;IACD,MAAM,EAAE;QACN,UAAU,EAAE,WAAW;QACvB,oBAAoB,EAAE,qBAAqB;QAC3C,gBAAgB,EAAE,iBAAiB;QACnC,UAAU,EAAE,WAAW;QACvB,cAAc,EAAE,eAAe;QAC/B,SAAS,EAAE,UAAU;QACrB,wBAAwB,EAAE,yBAAyB;KACpD;IACD,QAAQ,EAAE;QACR,eAAe,EAAE,gBAAgB;QACjC,YAAY,EAAE,aAAa;QAC3B,cAAc,EAAE,eAAe;KAChC;IACD,MAAM,EAAE;QACN,eAAe,EAAE,gBAAgB;QACjC,YAAY,EAAE,aAAa;QAC3B,UAAU,EAAE,WAAW;QACvB,UAAU,EAAE,WAAW;KACxB;IACD,QAAQ,EAAE;QACR,eAAe,EAAE,gBAAgB;QACjC,YAAY,EAAE,aAAa;QAC3B,YAAY,EAAE,aAAa;KAC5B;CACF,CAAC;AAEF;;;;;;;;;GASG;AACH,MAAM,eAAe,GAAwC;IAC3D,OAAO,EAAE,IAAI,GAAG,CAAC,CAAC,YAAY,EAAE,eAAe,EAAE,cAAc,CAAC,CAAC;IACjE,SAAS,EAAE,IAAI,GAAG,CAAC,CAAC,YAAY,CAAC,CAAC;CACnC,CAAC;AAEF,MAAM,cAAc,GAAwB,IAAI,GAAG,EAAE,CAAC;AAEtD;;;;;;;;;;;GAWG;AACH,MAAM,yBAAyB,GAAwB,IAAI,GAAG,CAAC;IAC7D,WAAW;IACX,SAAS;IACT,cAAc;IACd,kBAAkB;IAClB,WAAW;IACX,WAAW;IACX,QAAQ;IACR,UAAU;IACV,aAAa;IACb,SAAS;IACT,UAAU;CACX,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,kBAAkB,GAAiB;IAC9C,EAAE,EAAE,aAAa;IACjB,uBAAuB,EAAE,yBAAyB;IAClD,eAAe,CAAC,QAAQ,EAAE,OAAO;QAC/B,MAAM,OAAO,GAAG,kBAAkB,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC;QACnD,MAAM,OAAO,GAAG,eAAe,CAAC,QAAQ,CAAC,IAAI,cAAc,CAAC;QAC5D,MAAM,GAAG,GAA4B,EAAE,CAAC;QACxC,MAAM,QAAQ,GAAa,EAAE,CAAC;QAE9B,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;YACnD,IAAI,KAAK,KAAK,SAAS;gBAAE,SAAS;YAClC,IAAI,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;gBACrB,QAAQ,CAAC,IAAI,CACX,wCAAwC,GAAG,yEAAyE,CACrH,CAAC;gBACF,SAAS;YACX,CAAC;YACD,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;YAC5B,IAAI,CAAC,MAAM,EAAE,CAAC;gBACZ,GAAG,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC;gBACjB,SAAS;YACX,CAAC;YACD,IAAI,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;gBACzB,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC;oBAAE,SAAS;gBACjC,GAAG,CAAC,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;gBACvB,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBACrB,QAAQ,CAAC,IAAI,CACX,yBAAyB,GAAG,kBAAkB,MAAM,4BAA4B,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,mCAAmC,QAAQ,0IAA0I,CAC9R,CAAC;gBACJ,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,GAAG,CAAC,MAAM,CAAC,GAAG,KAAK,CAAC;YACtB,CAAC;QACH,CAAC;QAED,OAAO,EAAE,OAAO,EAAE,GAAG,EAAE,QAAQ,EAAE,CAAC;IACpC,CAAC;CACF,CAAC"}
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package/package.json
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{
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"name": "@cyanheads/brapi-mcp-server",
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"mcpName": "io.github.cyanheads/brapi-mcp-server",
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"version": "0.4.
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"version": "0.4.3",
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"description": "BrAPI v2.1 MCP server — studies, germplasm, observations, genotypes, images, and pedigrees.",
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"author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
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"type": "module",
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package/server.json
CHANGED
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"url": "https://github.com/cyanheads/brapi-mcp-server",
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"source": "github"
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},
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"version": "0.4.
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"version": "0.4.3",
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"packages": [
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{
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"registryType": "npm",
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"registryBaseUrl": "https://registry.npmjs.org",
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"identifier": "@cyanheads/brapi-mcp-server",
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"runtimeHint": "bun",
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"version": "0.4.
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"version": "0.4.3",
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"packageArguments": [
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{ "type": "positional", "value": "run" },
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{ "type": "positional", "value": "start:stdio" }
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"registryBaseUrl": "https://registry.npmjs.org",
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"identifier": "@cyanheads/brapi-mcp-server",
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"runtimeHint": "bun",
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"version": "0.4.
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"version": "0.4.3",
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"packageArguments": [
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{ "type": "positional", "value": "run" },
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{ "type": "positional", "value": "start:http" }
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