@cyanheads/brapi-mcp-server 0.3.5 → 0.3.7

package/dist/mcp-server/tools/definitions/index.d.ts.map

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package/dist/mcp-server/tools/definitions/index.js

@@ -0,0 +1,50 @@
+/**
+ * @fileoverview Tool registration barrel. The write tool
+ * (`brapi_submit_observations`) is exported separately so callers can decide
+ * whether to register it based on the `BRAPI_ENABLE_WRITES` flag — keeping
+ * this module free of eager config reads.
+ * @module mcp-server/tools/definitions/index
+ */
+import { brapiConnect } from './brapi-connect.tool.js';
+import { brapiDescribeFilters } from './brapi-describe-filters.tool.js';
+import { brapiFindGenotypeCalls } from './brapi-find-genotype-calls.tool.js';
+import { brapiFindGermplasm } from './brapi-find-germplasm.tool.js';
+import { brapiFindImages } from './brapi-find-images.tool.js';
+import { brapiFindLocations } from './brapi-find-locations.tool.js';
+import { brapiFindObservations } from './brapi-find-observations.tool.js';
+import { brapiFindStudies } from './brapi-find-studies.tool.js';
+import { brapiFindVariables } from './brapi-find-variables.tool.js';
+import { brapiFindVariants } from './brapi-find-variants.tool.js';
+import { brapiGetGermplasm } from './brapi-get-germplasm.tool.js';
+import { brapiGetImage } from './brapi-get-image.tool.js';
+import { brapiGetStudy } from './brapi-get-study.tool.js';
+import { brapiManageDataset } from './brapi-manage-dataset.tool.js';
+import { brapiRawGet } from './brapi-raw-get.tool.js';
+import { brapiRawSearch } from './brapi-raw-search.tool.js';
+import { brapiServerInfo } from './brapi-server-info.tool.js';
+import { brapiSubmitObservations } from './brapi-submit-observations.tool.js';
+import { brapiWalkPedigree } from './brapi-walk-pedigree.tool.js';
+/** Read-only tools registered unconditionally on every server. */
+export const readOnlyToolDefinitions = [
+    brapiConnect,
+    brapiServerInfo,
+    brapiDescribeFilters,
+    brapiFindStudies,
+    brapiGetStudy,
+    brapiFindGermplasm,
+    brapiGetGermplasm,
+    brapiWalkPedigree,
+    brapiFindVariables,
+    brapiFindObservations,
+    brapiFindImages,
+    brapiGetImage,
+    brapiFindLocations,
+    brapiFindVariants,
+    brapiFindGenotypeCalls,
+    brapiManageDataset,
+    brapiRawGet,
+    brapiRawSearch,
+];
+/** Write tools — registered only when `BRAPI_ENABLE_WRITES=true`. */
+export const writeToolDefinitions = [brapiSubmitObservations];
+//# sourceMappingURL=index.js.map

package/dist/mcp-server/tools/definitions/index.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@cyanheads/brapi-mcp-server",
   "mcpName": "io.github.cyanheads/brapi-mcp-server",
-  "version": "0.3.5",
+  "version": "0.3.7",
   "description": "BrAPI v2.1 MCP server — studies, germplasm, observations, genotypes, images, and pedigrees.",
   "author": "Casey Hand @cyanheads (https://github.com/cyanheads/brapi-mcp-server#readme)",
   "type": "module",
@@ -20,19 +20,20 @@
     "server.json"
   ],
   "scripts": {
-    "build": "tsx scripts/build.ts",
-    "rebuild": "tsx scripts/clean.ts && tsx scripts/build.ts",
-    "clean": "tsx scripts/clean.ts",
-    "devcheck": "tsx scripts/devcheck.ts",
-    "tree": "tsx scripts/tree.ts",
+    "build": "bun run scripts/build.ts",
+    "rebuild": "bun run scripts/clean.ts && bun run build",
+    "clean": "bun run scripts/clean.ts",
+    "devcheck": "bun run scripts/devcheck.ts",
+    "tree": "bun run scripts/tree.ts",
     "format": "biome check --write --unsafe .",
-    "lint:mcp": "tsx scripts/lint-mcp.ts",
-    "changelog:build": "tsx scripts/build-changelog.ts",
-    "changelog:check": "tsx scripts/build-changelog.ts --check",
+    "lint:mcp": "bun run scripts/lint-mcp.ts",
+    "changelog:build": "bun run scripts/build-changelog.ts",
+    "changelog:check": "bun run scripts/build-changelog.ts --check",
     "test": "bunx --bun vitest run",
-    "start": "node dist/index.js",
-    "start:stdio": "MCP_TRANSPORT_TYPE=stdio node dist/index.js",
-    "start:http": "MCP_TRANSPORT_TYPE=http node dist/index.js"
+    "publish-mcp": "mcp-publisher login github -token \"$(security find-generic-password -a \"$USER\" -s mcp-publisher-github-pat -w)\" && mcp-publisher publish",
+    "start": "bun ./dist/index.js",
+    "start:stdio": "MCP_TRANSPORT_TYPE=stdio bun ./dist/index.js",
+    "start:http": "MCP_TRANSPORT_TYPE=http bun ./dist/index.js"
   },
   "keywords": [
     "mcp",
@@ -79,7 +80,6 @@
     "depcheck": "^1.4.7",
     "ignore": "^7.0.5",
     "tsc-alias": "^1.8.16",
-    "tsx": "^4.21.0",
     "typescript": "^6.0.3",
     "vitest": "^4.1.5"
   }

package/server.json

@@ -6,14 +6,14 @@
     "url": "https://github.com/cyanheads/brapi-mcp-server",
     "source": "github"
   },
-  "version": "0.3.5",
+  "version": "0.3.7",
   "packages": [
     {
       "registryType": "npm",
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
-      "runtimeHint": "node",
-      "version": "0.3.5",
+      "runtimeHint": "bun",
+      "version": "0.3.7",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:stdio" }
@@ -25,6 +25,13 @@
           "format": "string",
           "isRequired": false
         },
+        {
+          "name": "BRAPI_ENABLE_WRITES",
+          "description": "Opt-in flag for the write surface (brapi_submit_observations). Off by default — the tool is omitted from tools/list unless the operator opts in.",
+          "format": "string",
+          "isRequired": false,
+          "default": "false"
+        },
         {
           "name": "MCP_LOG_LEVEL",
           "description": "Sets the minimum log level for output (e.g., 'debug', 'info', 'warn').",
@@ -41,8 +48,8 @@
       "registryType": "npm",
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/brapi-mcp-server",
-      "runtimeHint": "node",
-      "version": "0.3.5",
+      "runtimeHint": "bun",
+      "version": "0.3.7",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:http" }
@@ -54,6 +61,13 @@
           "format": "string",
           "isRequired": false
         },
+        {
+          "name": "BRAPI_ENABLE_WRITES",
+          "description": "Opt-in flag for the write surface (brapi_submit_observations). Off by default — the tool is omitted from tools/list unless the operator opts in.",
+          "format": "string",
+          "isRequired": false,
+          "default": "false"
+        },
         {
           "name": "MCP_HTTP_HOST",
           "description": "The hostname for the HTTP server.",