@cyanheads/brapi-mcp-server 0.3.5 → 0.3.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CLAUDE.md +2 -2
- package/README.md +8 -5
- package/changelog/0.3.x/0.3.6.md +23 -0
- package/changelog/0.3.x/0.3.7.md +18 -0
- package/dist/config/server-config.d.ts +4 -0
- package/dist/config/server-config.d.ts.map +1 -1
- package/dist/config/server-config.js +6 -0
- package/dist/config/server-config.js.map +1 -1
- package/dist/index.js +6 -41
- package/dist/index.js.map +1 -1
- package/dist/mcp-server/tools/definitions/index.d.ts +1030 -0
- package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/index.js +50 -0
- package/dist/mcp-server/tools/definitions/index.js.map +1 -0
- package/package.json +13 -13
- package/server.json +19 -5
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/**
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* @fileoverview Tool registration barrel. The write tool
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* (`brapi_submit_observations`) is exported separately so callers can decide
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* whether to register it based on the `BRAPI_ENABLE_WRITES` flag — keeping
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* this module free of eager config reads.
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* @module mcp-server/tools/definitions/index
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*/
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/** Read-only tools registered unconditionally on every server. */
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export declare const readOnlyToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
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endpoint: import("zod").ZodEnum<{
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[x: string]: string;
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}>;
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}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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endpoint: import("zod").ZodString;
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filterCount: import("zod").ZodNumber;
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filters: import("zod").ZodArray<import("zod").ZodObject<{
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name: import("zod").ZodString;
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type: import("zod").ZodEnum<{
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string: "string";
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number: "number";
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boolean: "boolean";
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date: "date";
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integer: "integer";
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"string[]": "string[]";
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"integer[]": "integer[]";
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}>;
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description: import("zod").ZodString;
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example: import("zod").ZodString;
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}, import("zod/v4/core").$strip>>;
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specReference: import("zod").ZodOptional<import("zod").ZodString>;
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availableEndpoints: import("zod").ZodArray<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>, readonly [{
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readonly reason: "unknown_endpoint";
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readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
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readonly when: "No filter catalog is registered for the requested endpoint";
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readonly recovery: "Pick an endpoint from data.availableEndpoints — same set as the input enum (studies, germplasm, observations, variables, images, variants, locations).";
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}]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
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germplasmDbId: import("zod").ZodString;
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alias: import("zod").ZodOptional<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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alias: import("zod").ZodString;
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germplasm: import("zod").ZodObject<{
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germplasmDbId: import("zod").ZodString;
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germplasmName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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germplasmPUI: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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commonCropName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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accessionNumber: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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genus: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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species: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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subtaxa: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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defaultDisplayName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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pedigree: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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biologicalStatusOfAccessionDescription: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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germplasmOrigin: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodArray<import("zod").ZodObject<{}, import("zod/v4/core").$loose>>>>;
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countryOfOriginCode: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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collection: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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instituteCode: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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instituteName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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synonyms: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodArray<import("zod").ZodObject<{
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synonym: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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type: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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}, import("zod/v4/core").$loose>>>>;
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}, import("zod/v4/core").$loose>;
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parents: import("zod").ZodArray<import("zod").ZodObject<{
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germplasmDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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germplasmName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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parentType: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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}, import("zod/v4/core").$loose>>;
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attributes: import("zod").ZodArray<import("zod").ZodObject<{
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attributeDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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attributeName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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attributeValue: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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determinedDate: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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}, import("zod/v4/core").$loose>>;
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studyCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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directParentCount: import("zod").ZodNumber;
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directDescendantCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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warnings: import("zod").ZodArray<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>, readonly [{
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readonly reason: "germplasm_not_found";
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readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
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readonly when: "Upstream returned no germplasm record for the requested DbId";
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readonly recovery: "Verify the germplasmDbId on the target server, or run brapi_find_germplasm to discover valid IDs.";
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}]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
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alias: import("zod").ZodOptional<import("zod").ZodString>;
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forceRefresh: import("zod").ZodDefault<import("zod").ZodBoolean>;
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}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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alias: import("zod").ZodString;
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baseUrl: import("zod").ZodString;
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server: import("zod").ZodObject<{
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name: import("zod").ZodOptional<import("zod").ZodString>;
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description: import("zod").ZodOptional<import("zod").ZodString>;
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organizationName: import("zod").ZodOptional<import("zod").ZodString>;
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organizationURL: import("zod").ZodOptional<import("zod").ZodString>;
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documentationURL: import("zod").ZodOptional<import("zod").ZodString>;
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contactEmail: import("zod").ZodOptional<import("zod").ZodString>;
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brapiVersion: import("zod").ZodOptional<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>;
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auth: import("zod").ZodObject<{
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mode: import("zod").ZodEnum<{
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none: "none";
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sgn: "sgn";
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oauth2: "oauth2";
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api_key: "api_key";
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bearer: "bearer";
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}>;
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headerName: import("zod").ZodOptional<import("zod").ZodString>;
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expiresAt: import("zod").ZodOptional<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>;
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capabilities: import("zod").ZodObject<{
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supportedCount: import("zod").ZodNumber;
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supported: import("zod").ZodArray<import("zod").ZodString>;
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notableGaps: import("zod").ZodArray<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>;
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content: import("zod").ZodObject<{
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crops: import("zod").ZodArray<import("zod").ZodString>;
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studyCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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germplasmCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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programCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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locationCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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}, import("zod/v4/core").$strip>;
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notes: import("zod").ZodArray<import("zod").ZodString>;
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fetchedAt: import("zod").ZodString;
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}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
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studyDbId: import("zod").ZodString;
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alias: import("zod").ZodOptional<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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alias: import("zod").ZodString;
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study: import("zod").ZodObject<{
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studyDbId: import("zod").ZodString;
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studyName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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studyType: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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studyDescription: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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programDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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programName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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trialDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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trialName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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locationDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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locationName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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commonCropName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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seasons: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodArray<import("zod").ZodString>>>;
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active: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodBoolean>>;
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startDate: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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endDate: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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studyCode: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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studyPUI: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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}, import("zod/v4/core").$loose>;
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program: import("zod").ZodOptional<import("zod").ZodObject<{
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programDbId: import("zod").ZodString;
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programName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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commonCropName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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abbreviation: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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leadPersonName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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documentationURL: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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}, import("zod/v4/core").$loose>>;
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trial: import("zod").ZodOptional<import("zod").ZodObject<{
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trialDbId: import("zod").ZodString;
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trialName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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programDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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programName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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commonCropName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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startDate: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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endDate: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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active: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodBoolean>>;
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trialDescription: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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}, import("zod/v4/core").$loose>>;
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location: import("zod").ZodOptional<import("zod").ZodObject<{
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locationDbId: import("zod").ZodString;
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locationName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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abbreviation: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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countryCode: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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countryName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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locationType: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
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latitude: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
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longitude: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
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altitude: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
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}, import("zod/v4/core").$loose>>;
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observationCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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observationUnitCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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variableCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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warnings: import("zod").ZodArray<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>, readonly [{
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readonly reason: "study_not_found";
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readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
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readonly when: "Upstream returned no study record for the requested DbId";
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readonly recovery: "Verify the studyDbId on the target server, or run brapi_find_studies to discover valid IDs.";
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}]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
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baseUrl: import("zod").ZodOptional<import("zod").ZodString>;
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auth: import("zod").ZodOptional<import("zod").ZodDiscriminatedUnion<[import("zod").ZodObject<{
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mode: import("zod").ZodLiteral<"none">;
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}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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mode: import("zod").ZodLiteral<"bearer">;
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token: import("zod").ZodString;
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}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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mode: import("zod").ZodLiteral<"api_key">;
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apiKey: import("zod").ZodString;
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headerName: import("zod").ZodOptional<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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mode: import("zod").ZodLiteral<"sgn">;
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username: import("zod").ZodString;
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password: import("zod").ZodString;
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}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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mode: import("zod").ZodLiteral<"oauth2">;
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clientId: import("zod").ZodString;
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clientSecret: import("zod").ZodString;
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tokenUrl: import("zod").ZodOptional<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>], "mode">>;
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alias: import("zod").ZodDefault<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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alias: import("zod").ZodString;
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baseUrl: import("zod").ZodString;
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server: import("zod").ZodObject<{
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name: import("zod").ZodOptional<import("zod").ZodString>;
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description: import("zod").ZodOptional<import("zod").ZodString>;
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organizationName: import("zod").ZodOptional<import("zod").ZodString>;
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organizationURL: import("zod").ZodOptional<import("zod").ZodString>;
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documentationURL: import("zod").ZodOptional<import("zod").ZodString>;
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218
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contactEmail: import("zod").ZodOptional<import("zod").ZodString>;
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brapiVersion: import("zod").ZodOptional<import("zod").ZodString>;
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220
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}, import("zod/v4/core").$strip>;
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221
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+
auth: import("zod").ZodObject<{
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222
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+
mode: import("zod").ZodEnum<{
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none: "none";
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sgn: "sgn";
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oauth2: "oauth2";
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api_key: "api_key";
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bearer: "bearer";
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}>;
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229
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+
headerName: import("zod").ZodOptional<import("zod").ZodString>;
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230
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+
expiresAt: import("zod").ZodOptional<import("zod").ZodString>;
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231
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+
}, import("zod/v4/core").$strip>;
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capabilities: import("zod").ZodObject<{
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supportedCount: import("zod").ZodNumber;
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supported: import("zod").ZodArray<import("zod").ZodString>;
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notableGaps: import("zod").ZodArray<import("zod").ZodString>;
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}, import("zod/v4/core").$strip>;
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237
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content: import("zod").ZodObject<{
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crops: import("zod").ZodArray<import("zod").ZodString>;
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studyCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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germplasmCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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programCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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locationCount: import("zod").ZodOptional<import("zod").ZodNumber>;
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}, import("zod/v4/core").$strip>;
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notes: import("zod").ZodArray<import("zod").ZodString>;
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fetchedAt: import("zod").ZodString;
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246
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+
}, import("zod/v4/core").$strip>, readonly [{
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readonly reason: "auth_token_exchange_failed";
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248
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+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Forbidden;
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249
|
+
readonly when: "SGN or OAuth token exchange against the BrAPI /token endpoint failed";
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250
|
+
readonly recovery: "Verify the credentials and that the server exposes /token before retrying.";
|
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251
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+
}, {
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|
+
readonly reason: "auth_no_access_token";
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253
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Forbidden;
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254
|
+
readonly when: "Token endpoint responded but did not return an access_token";
|
|
255
|
+
readonly recovery: "Confirm the credentials are valid and the upstream IdP issues access tokens for this grant.";
|
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256
|
+
}]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
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|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
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258
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+
variantSetDbId: import("zod").ZodOptional<import("zod").ZodString>;
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259
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+
variantSetDbIds: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
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germplasmDbIds: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
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callSetDbIds: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
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+
variantDbIds: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
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263
|
+
callFormat: import("zod").ZodOptional<import("zod").ZodEnum<{
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264
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+
VCF: "VCF";
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265
|
+
FLAPJACK: "FLAPJACK";
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266
|
+
DARTSEQ: "DARTSEQ";
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267
|
+
JSON: "JSON";
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268
|
+
}>>;
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269
|
+
maxCalls: import("zod").ZodOptional<import("zod").ZodNumber>;
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270
|
+
loadLimit: import("zod").ZodOptional<import("zod").ZodNumber>;
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271
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
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272
|
+
alias: import("zod").ZodString;
|
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273
|
+
results: import("zod").ZodArray<import("zod").ZodObject<{
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|
+
callSetDbId: import("zod").ZodOptional<import("zod").ZodString>;
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275
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+
callSetName: import("zod").ZodOptional<import("zod").ZodString>;
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276
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+
variantDbId: import("zod").ZodOptional<import("zod").ZodString>;
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+
variantName: import("zod").ZodOptional<import("zod").ZodString>;
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278
|
+
variantSetDbId: import("zod").ZodOptional<import("zod").ZodString>;
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279
|
+
genotype: import("zod").ZodOptional<import("zod").ZodObject<{
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280
|
+
values: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
281
|
+
}, import("zod/v4/core").$loose>>;
|
|
282
|
+
genotypeValue: import("zod").ZodOptional<import("zod").ZodString>;
|
|
283
|
+
phaseSet: import("zod").ZodOptional<import("zod").ZodString>;
|
|
284
|
+
}, import("zod/v4/core").$loose>>;
|
|
285
|
+
returnedCount: import("zod").ZodNumber;
|
|
286
|
+
totalCount: import("zod").ZodNumber;
|
|
287
|
+
hasMore: import("zod").ZodBoolean;
|
|
288
|
+
callFormatting: import("zod").ZodObject<{
|
|
289
|
+
expandHomozygotes: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
290
|
+
unknownString: import("zod").ZodOptional<import("zod").ZodString>;
|
|
291
|
+
sepPhased: import("zod").ZodOptional<import("zod").ZodString>;
|
|
292
|
+
sepUnphased: import("zod").ZodOptional<import("zod").ZodString>;
|
|
293
|
+
}, import("zod/v4/core").$strip>;
|
|
294
|
+
distributions: import("zod").ZodObject<{
|
|
295
|
+
callSetName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
296
|
+
variantName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
297
|
+
variantSetDbId: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
298
|
+
}, import("zod/v4/core").$strip>;
|
|
299
|
+
dataset: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
300
|
+
datasetId: import("zod").ZodString;
|
|
301
|
+
rowCount: import("zod").ZodNumber;
|
|
302
|
+
sizeBytes: import("zod").ZodNumber;
|
|
303
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
304
|
+
createdAt: import("zod").ZodString;
|
|
305
|
+
expiresAt: import("zod").ZodString;
|
|
306
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
307
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
308
|
+
}, import("zod/v4/core").$strip>>;
|
|
309
|
+
truncated: import("zod").ZodBoolean;
|
|
310
|
+
warnings: import("zod").ZodArray<import("zod").ZodString>;
|
|
311
|
+
searchBody: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>;
|
|
312
|
+
}, import("zod/v4/core").$strip>, readonly [{
|
|
313
|
+
readonly reason: "no_filters";
|
|
314
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;
|
|
315
|
+
readonly when: "No variant set, germplasm, call set, or variant filter was provided";
|
|
316
|
+
readonly recovery: "Provide variantSetDbId or germplasmDbIds before retrying — unfiltered pulls are too expensive.";
|
|
317
|
+
}]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
318
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
319
|
+
names: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
320
|
+
germplasmDbIds: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
321
|
+
germplasmPUIs: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
322
|
+
accessionNumbers: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
323
|
+
crops: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
324
|
+
synonyms: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
325
|
+
collections: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
326
|
+
genus: import("zod").ZodOptional<import("zod").ZodString>;
|
|
327
|
+
species: import("zod").ZodOptional<import("zod").ZodString>;
|
|
328
|
+
text: import("zod").ZodOptional<import("zod").ZodString>;
|
|
329
|
+
loadLimit: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
330
|
+
extraFilters: import("zod").ZodOptional<import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>>;
|
|
331
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
332
|
+
alias: import("zod").ZodString;
|
|
333
|
+
results: import("zod").ZodArray<import("zod").ZodObject<{
|
|
334
|
+
germplasmDbId: import("zod").ZodString;
|
|
335
|
+
germplasmName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
336
|
+
germplasmPUI: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
337
|
+
commonCropName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
338
|
+
accessionNumber: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
339
|
+
genus: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
340
|
+
species: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
341
|
+
subtaxa: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
342
|
+
defaultDisplayName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
343
|
+
pedigree: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
344
|
+
biologicalStatusOfAccessionDescription: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
345
|
+
germplasmOrigin: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodArray<import("zod").ZodObject<{}, import("zod/v4/core").$loose>>>>;
|
|
346
|
+
countryOfOriginCode: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
347
|
+
collection: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
348
|
+
instituteCode: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
349
|
+
instituteName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
350
|
+
synonyms: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodArray<import("zod").ZodObject<{
|
|
351
|
+
synonym: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
352
|
+
type: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
353
|
+
}, import("zod/v4/core").$loose>>>>;
|
|
354
|
+
}, import("zod/v4/core").$loose>>;
|
|
355
|
+
returnedCount: import("zod").ZodNumber;
|
|
356
|
+
totalCount: import("zod").ZodNumber;
|
|
357
|
+
hasMore: import("zod").ZodBoolean;
|
|
358
|
+
distributions: import("zod").ZodObject<{
|
|
359
|
+
commonCropName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
360
|
+
genus: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
361
|
+
species: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
362
|
+
collection: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
363
|
+
countryOfOriginCode: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
364
|
+
}, import("zod/v4/core").$strip>;
|
|
365
|
+
refinementHint: import("zod").ZodOptional<import("zod").ZodString>;
|
|
366
|
+
dataset: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
367
|
+
datasetId: import("zod").ZodString;
|
|
368
|
+
rowCount: import("zod").ZodNumber;
|
|
369
|
+
sizeBytes: import("zod").ZodNumber;
|
|
370
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
371
|
+
createdAt: import("zod").ZodString;
|
|
372
|
+
expiresAt: import("zod").ZodString;
|
|
373
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
374
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
375
|
+
}, import("zod/v4/core").$strip>>;
|
|
376
|
+
warnings: import("zod").ZodArray<import("zod").ZodString>;
|
|
377
|
+
appliedFilters: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>;
|
|
378
|
+
}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
379
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
380
|
+
images: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
381
|
+
observationUnits: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
382
|
+
observations: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
383
|
+
studies: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
384
|
+
imageFileNames: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
385
|
+
mimeTypes: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
386
|
+
descriptiveOntologyTerms: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
387
|
+
loadLimit: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
388
|
+
extraFilters: import("zod").ZodOptional<import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>>;
|
|
389
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
390
|
+
alias: import("zod").ZodString;
|
|
391
|
+
results: import("zod").ZodArray<import("zod").ZodObject<{
|
|
392
|
+
imageDbId: import("zod").ZodString;
|
|
393
|
+
imageName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
394
|
+
imageFileName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
395
|
+
imageFileSize: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
396
|
+
imageHeight: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
397
|
+
imageWidth: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
398
|
+
mimeType: import("zod").ZodOptional<import("zod").ZodString>;
|
|
399
|
+
imageTimeStamp: import("zod").ZodOptional<import("zod").ZodString>;
|
|
400
|
+
imageURL: import("zod").ZodOptional<import("zod").ZodString>;
|
|
401
|
+
observationUnitDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
402
|
+
observationUnitName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
403
|
+
observationDbIds: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
404
|
+
studyDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
405
|
+
studyName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
406
|
+
descriptiveOntologyTerms: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
407
|
+
copyright: import("zod").ZodOptional<import("zod").ZodString>;
|
|
408
|
+
description: import("zod").ZodOptional<import("zod").ZodString>;
|
|
409
|
+
}, import("zod/v4/core").$loose>>;
|
|
410
|
+
returnedCount: import("zod").ZodNumber;
|
|
411
|
+
totalCount: import("zod").ZodNumber;
|
|
412
|
+
hasMore: import("zod").ZodBoolean;
|
|
413
|
+
distributions: import("zod").ZodObject<{
|
|
414
|
+
mimeType: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
415
|
+
studyName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
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416
|
+
observationUnitName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
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417
|
+
descriptiveOntologyTerms: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
418
|
+
}, import("zod/v4/core").$strip>;
|
|
419
|
+
refinementHint: import("zod").ZodOptional<import("zod").ZodString>;
|
|
420
|
+
dataset: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
421
|
+
datasetId: import("zod").ZodString;
|
|
422
|
+
rowCount: import("zod").ZodNumber;
|
|
423
|
+
sizeBytes: import("zod").ZodNumber;
|
|
424
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
425
|
+
createdAt: import("zod").ZodString;
|
|
426
|
+
expiresAt: import("zod").ZodString;
|
|
427
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
428
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
429
|
+
}, import("zod/v4/core").$strip>>;
|
|
430
|
+
warnings: import("zod").ZodArray<import("zod").ZodString>;
|
|
431
|
+
appliedFilters: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>;
|
|
432
|
+
}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
433
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
434
|
+
locations: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
435
|
+
locationNames: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
436
|
+
countryCodes: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
437
|
+
locationTypes: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
438
|
+
abbreviations: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
439
|
+
bbox: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
440
|
+
minLat: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
441
|
+
maxLat: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
442
|
+
minLon: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
443
|
+
maxLon: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
444
|
+
}, import("zod/v4/core").$strip>>;
|
|
445
|
+
loadLimit: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
446
|
+
extraFilters: import("zod").ZodOptional<import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>>;
|
|
447
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
448
|
+
alias: import("zod").ZodString;
|
|
449
|
+
results: import("zod").ZodArray<import("zod").ZodObject<{
|
|
450
|
+
locationDbId: import("zod").ZodString;
|
|
451
|
+
locationName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
452
|
+
abbreviation: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
453
|
+
countryCode: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
454
|
+
countryName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
455
|
+
locationType: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
456
|
+
latitude: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
|
|
457
|
+
longitude: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
|
|
458
|
+
altitude: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
|
|
459
|
+
instituteName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
460
|
+
instituteAddress: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
461
|
+
documentationURL: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
462
|
+
}, import("zod/v4/core").$loose>>;
|
|
463
|
+
returnedCount: import("zod").ZodNumber;
|
|
464
|
+
totalCount: import("zod").ZodNumber;
|
|
465
|
+
hasMore: import("zod").ZodBoolean;
|
|
466
|
+
distributions: import("zod").ZodObject<{
|
|
467
|
+
countryCode: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
468
|
+
locationType: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
469
|
+
}, import("zod/v4/core").$strip>;
|
|
470
|
+
refinementHint: import("zod").ZodOptional<import("zod").ZodString>;
|
|
471
|
+
dataset: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
472
|
+
datasetId: import("zod").ZodString;
|
|
473
|
+
rowCount: import("zod").ZodNumber;
|
|
474
|
+
sizeBytes: import("zod").ZodNumber;
|
|
475
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
476
|
+
createdAt: import("zod").ZodString;
|
|
477
|
+
expiresAt: import("zod").ZodString;
|
|
478
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
479
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
480
|
+
}, import("zod/v4/core").$strip>>;
|
|
481
|
+
warnings: import("zod").ZodArray<import("zod").ZodString>;
|
|
482
|
+
appliedFilters: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>;
|
|
483
|
+
}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
484
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
485
|
+
studies: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
486
|
+
germplasm: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
487
|
+
variables: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
488
|
+
observationUnits: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
489
|
+
observations: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
490
|
+
seasons: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
491
|
+
programs: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
492
|
+
trials: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
493
|
+
observationLevels: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
494
|
+
timestampFrom: import("zod").ZodOptional<import("zod").ZodString>;
|
|
495
|
+
timestampTo: import("zod").ZodOptional<import("zod").ZodString>;
|
|
496
|
+
loadLimit: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
497
|
+
extraFilters: import("zod").ZodOptional<import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>>;
|
|
498
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
499
|
+
alias: import("zod").ZodString;
|
|
500
|
+
results: import("zod").ZodArray<import("zod").ZodObject<{
|
|
501
|
+
observationDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
502
|
+
observationUnitDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
503
|
+
observationUnitName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
504
|
+
observationVariableDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
505
|
+
observationVariableName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
506
|
+
studyDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
507
|
+
studyName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
508
|
+
germplasmDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
509
|
+
germplasmName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
510
|
+
observationLevel: import("zod").ZodOptional<import("zod").ZodString>;
|
|
511
|
+
season: import("zod").ZodOptional<import("zod").ZodUnion<readonly [import("zod").ZodString, import("zod").ZodObject<{
|
|
512
|
+
seasonDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
513
|
+
year: import("zod").ZodOptional<import("zod").ZodUnion<readonly [import("zod").ZodString, import("zod").ZodNumber]>>;
|
|
514
|
+
season: import("zod").ZodOptional<import("zod").ZodString>;
|
|
515
|
+
seasonName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
516
|
+
}, import("zod/v4/core").$loose>]>>;
|
|
517
|
+
value: import("zod").ZodOptional<import("zod").ZodString>;
|
|
518
|
+
observationTimeStamp: import("zod").ZodOptional<import("zod").ZodString>;
|
|
519
|
+
collector: import("zod").ZodOptional<import("zod").ZodString>;
|
|
520
|
+
uploadedBy: import("zod").ZodOptional<import("zod").ZodString>;
|
|
521
|
+
}, import("zod/v4/core").$loose>>;
|
|
522
|
+
returnedCount: import("zod").ZodNumber;
|
|
523
|
+
totalCount: import("zod").ZodNumber;
|
|
524
|
+
hasMore: import("zod").ZodBoolean;
|
|
525
|
+
distributions: import("zod").ZodObject<{
|
|
526
|
+
observationVariableName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
527
|
+
studyName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
528
|
+
germplasmName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
529
|
+
observationLevel: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
530
|
+
season: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
531
|
+
}, import("zod/v4/core").$strip>;
|
|
532
|
+
refinementHint: import("zod").ZodOptional<import("zod").ZodString>;
|
|
533
|
+
dataset: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
534
|
+
datasetId: import("zod").ZodString;
|
|
535
|
+
rowCount: import("zod").ZodNumber;
|
|
536
|
+
sizeBytes: import("zod").ZodNumber;
|
|
537
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
538
|
+
createdAt: import("zod").ZodString;
|
|
539
|
+
expiresAt: import("zod").ZodString;
|
|
540
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
541
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
542
|
+
}, import("zod/v4/core").$strip>>;
|
|
543
|
+
warnings: import("zod").ZodArray<import("zod").ZodString>;
|
|
544
|
+
appliedFilters: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>;
|
|
545
|
+
}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
546
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
547
|
+
crop: import("zod").ZodOptional<import("zod").ZodString>;
|
|
548
|
+
trialTypes: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
549
|
+
seasons: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
550
|
+
locations: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
551
|
+
programs: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
552
|
+
trials: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
553
|
+
studyNames: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
554
|
+
active: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
555
|
+
text: import("zod").ZodOptional<import("zod").ZodString>;
|
|
556
|
+
loadLimit: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
557
|
+
extraFilters: import("zod").ZodOptional<import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>>;
|
|
558
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
559
|
+
alias: import("zod").ZodString;
|
|
560
|
+
results: import("zod").ZodArray<import("zod").ZodObject<{
|
|
561
|
+
studyDbId: import("zod").ZodString;
|
|
562
|
+
studyName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
563
|
+
studyType: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
564
|
+
studyDescription: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
565
|
+
programDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
566
|
+
programName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
567
|
+
trialDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
568
|
+
trialName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
569
|
+
locationDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
570
|
+
locationName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
571
|
+
commonCropName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
572
|
+
seasons: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodArray<import("zod").ZodString>>>;
|
|
573
|
+
active: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodBoolean>>;
|
|
574
|
+
startDate: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
575
|
+
endDate: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
576
|
+
studyCode: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
577
|
+
studyPUI: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
578
|
+
}, import("zod/v4/core").$loose>>;
|
|
579
|
+
returnedCount: import("zod").ZodNumber;
|
|
580
|
+
totalCount: import("zod").ZodNumber;
|
|
581
|
+
hasMore: import("zod").ZodBoolean;
|
|
582
|
+
distributions: import("zod").ZodObject<{
|
|
583
|
+
programName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
584
|
+
studyType: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
585
|
+
seasons: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
586
|
+
locationName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
587
|
+
commonCropName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
588
|
+
}, import("zod/v4/core").$strip>;
|
|
589
|
+
refinementHint: import("zod").ZodOptional<import("zod").ZodString>;
|
|
590
|
+
dataset: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
591
|
+
datasetId: import("zod").ZodString;
|
|
592
|
+
rowCount: import("zod").ZodNumber;
|
|
593
|
+
sizeBytes: import("zod").ZodNumber;
|
|
594
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
595
|
+
createdAt: import("zod").ZodString;
|
|
596
|
+
expiresAt: import("zod").ZodString;
|
|
597
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
598
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
599
|
+
}, import("zod/v4/core").$strip>>;
|
|
600
|
+
warnings: import("zod").ZodArray<import("zod").ZodString>;
|
|
601
|
+
appliedFilters: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>;
|
|
602
|
+
}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
603
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
604
|
+
variables: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
605
|
+
variableNames: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
606
|
+
variablePUIs: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
607
|
+
traitClasses: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
608
|
+
ontologies: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
609
|
+
studies: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
610
|
+
methods: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
611
|
+
scales: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
612
|
+
crop: import("zod").ZodOptional<import("zod").ZodString>;
|
|
613
|
+
text: import("zod").ZodOptional<import("zod").ZodString>;
|
|
614
|
+
loadLimit: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
615
|
+
extraFilters: import("zod").ZodOptional<import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>>;
|
|
616
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
617
|
+
alias: import("zod").ZodString;
|
|
618
|
+
results: import("zod").ZodArray<import("zod").ZodObject<{
|
|
619
|
+
observationVariableDbId: import("zod").ZodString;
|
|
620
|
+
observationVariableName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
621
|
+
observationVariablePUI: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
622
|
+
ontologyDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
623
|
+
ontologyName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
624
|
+
commonCropName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
625
|
+
trait: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodObject<{
|
|
626
|
+
traitDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
627
|
+
traitName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
628
|
+
traitClass: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
629
|
+
description: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
630
|
+
synonyms: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodArray<import("zod").ZodString>>>;
|
|
631
|
+
}, import("zod/v4/core").$loose>>>;
|
|
632
|
+
scale: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodObject<{
|
|
633
|
+
scaleDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
634
|
+
scaleName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
635
|
+
dataType: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
636
|
+
}, import("zod/v4/core").$loose>>>;
|
|
637
|
+
method: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodObject<{
|
|
638
|
+
methodDbId: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
639
|
+
methodName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
640
|
+
}, import("zod/v4/core").$loose>>>;
|
|
641
|
+
}, import("zod/v4/core").$loose>>;
|
|
642
|
+
returnedCount: import("zod").ZodNumber;
|
|
643
|
+
totalCount: import("zod").ZodNumber;
|
|
644
|
+
hasMore: import("zod").ZodBoolean;
|
|
645
|
+
distributions: import("zod").ZodObject<{
|
|
646
|
+
ontologyDbId: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
647
|
+
traitClass: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
648
|
+
scaleName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
649
|
+
}, import("zod/v4/core").$strip>;
|
|
650
|
+
ontologyCandidates: import("zod").ZodArray<import("zod").ZodObject<{
|
|
651
|
+
termId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
652
|
+
name: import("zod").ZodOptional<import("zod").ZodString>;
|
|
653
|
+
description: import("zod").ZodOptional<import("zod").ZodString>;
|
|
654
|
+
synonyms: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
655
|
+
ontologyDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
656
|
+
source: import("zod").ZodEnum<{
|
|
657
|
+
puiMatch: "puiMatch";
|
|
658
|
+
nameMatch: "nameMatch";
|
|
659
|
+
synonymMatch: "synonymMatch";
|
|
660
|
+
traitClassMatch: "traitClassMatch";
|
|
661
|
+
}>;
|
|
662
|
+
}, import("zod/v4/core").$strip>>;
|
|
663
|
+
refinementHint: import("zod").ZodOptional<import("zod").ZodString>;
|
|
664
|
+
dataset: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
665
|
+
datasetId: import("zod").ZodString;
|
|
666
|
+
rowCount: import("zod").ZodNumber;
|
|
667
|
+
sizeBytes: import("zod").ZodNumber;
|
|
668
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
669
|
+
createdAt: import("zod").ZodString;
|
|
670
|
+
expiresAt: import("zod").ZodString;
|
|
671
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
672
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
673
|
+
}, import("zod/v4/core").$strip>>;
|
|
674
|
+
warnings: import("zod").ZodArray<import("zod").ZodString>;
|
|
675
|
+
appliedFilters: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>;
|
|
676
|
+
}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
677
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
678
|
+
variantSets: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
679
|
+
variants: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
680
|
+
references: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
681
|
+
referenceName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
682
|
+
start: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
683
|
+
end: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
684
|
+
loadLimit: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
685
|
+
extraFilters: import("zod").ZodOptional<import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>>;
|
|
686
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
687
|
+
alias: import("zod").ZodString;
|
|
688
|
+
results: import("zod").ZodArray<import("zod").ZodObject<{
|
|
689
|
+
variantDbId: import("zod").ZodString;
|
|
690
|
+
variantNames: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
691
|
+
variantSetDbId: import("zod").ZodOptional<import("zod").ZodUnion<readonly [import("zod").ZodString, import("zod").ZodArray<import("zod").ZodString>]>>;
|
|
692
|
+
variantSetDbIds: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
693
|
+
variantType: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
694
|
+
referenceBases: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
695
|
+
alternateBases: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodArray<import("zod").ZodString>>>;
|
|
696
|
+
referenceName: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodString>>;
|
|
697
|
+
start: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
|
|
698
|
+
end: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodNumber>>;
|
|
699
|
+
filtersPassed: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodBoolean>>;
|
|
700
|
+
filtersApplied: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodBoolean>>;
|
|
701
|
+
filtersFailed: import("zod").ZodOptional<import("zod").ZodNullable<import("zod").ZodArray<import("zod").ZodString>>>;
|
|
702
|
+
}, import("zod/v4/core").$loose>>;
|
|
703
|
+
returnedCount: import("zod").ZodNumber;
|
|
704
|
+
totalCount: import("zod").ZodNumber;
|
|
705
|
+
hasMore: import("zod").ZodBoolean;
|
|
706
|
+
distributions: import("zod").ZodObject<{
|
|
707
|
+
variantType: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
708
|
+
referenceName: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
709
|
+
variantSetDbId: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodNumber>;
|
|
710
|
+
}, import("zod/v4/core").$strip>;
|
|
711
|
+
refinementHint: import("zod").ZodOptional<import("zod").ZodString>;
|
|
712
|
+
dataset: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
713
|
+
datasetId: import("zod").ZodString;
|
|
714
|
+
rowCount: import("zod").ZodNumber;
|
|
715
|
+
sizeBytes: import("zod").ZodNumber;
|
|
716
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
717
|
+
createdAt: import("zod").ZodString;
|
|
718
|
+
expiresAt: import("zod").ZodString;
|
|
719
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
720
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
721
|
+
}, import("zod/v4/core").$strip>>;
|
|
722
|
+
warnings: import("zod").ZodArray<import("zod").ZodString>;
|
|
723
|
+
appliedFilters: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>;
|
|
724
|
+
}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
725
|
+
imageDbIds: import("zod").ZodArray<import("zod").ZodString>;
|
|
726
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
727
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
728
|
+
alias: import("zod").ZodString;
|
|
729
|
+
images: import("zod").ZodArray<import("zod").ZodObject<{
|
|
730
|
+
imageDbId: import("zod").ZodString;
|
|
731
|
+
mimeType: import("zod").ZodString;
|
|
732
|
+
sizeBytes: import("zod").ZodNumber;
|
|
733
|
+
source: import("zod").ZodEnum<{
|
|
734
|
+
imageURL: "imageURL";
|
|
735
|
+
imagecontent: "imagecontent";
|
|
736
|
+
}>;
|
|
737
|
+
data: import("zod").ZodString;
|
|
738
|
+
metadata: import("zod").ZodObject<{
|
|
739
|
+
imageDbId: import("zod").ZodString;
|
|
740
|
+
imageName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
741
|
+
imageFileName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
742
|
+
imageHeight: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
743
|
+
imageWidth: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
744
|
+
mimeType: import("zod").ZodOptional<import("zod").ZodString>;
|
|
745
|
+
imageURL: import("zod").ZodOptional<import("zod").ZodString>;
|
|
746
|
+
observationUnitDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
747
|
+
observationUnitName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
748
|
+
studyDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
749
|
+
studyName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
750
|
+
imageTimeStamp: import("zod").ZodOptional<import("zod").ZodString>;
|
|
751
|
+
copyright: import("zod").ZodOptional<import("zod").ZodString>;
|
|
752
|
+
description: import("zod").ZodOptional<import("zod").ZodString>;
|
|
753
|
+
}, import("zod/v4/core").$loose>;
|
|
754
|
+
}, import("zod/v4/core").$strip>>;
|
|
755
|
+
errors: import("zod").ZodArray<import("zod").ZodObject<{
|
|
756
|
+
imageDbId: import("zod").ZodString;
|
|
757
|
+
error: import("zod").ZodString;
|
|
758
|
+
}, import("zod/v4/core").$strip>>;
|
|
759
|
+
warnings: import("zod").ZodArray<import("zod").ZodObject<{
|
|
760
|
+
imageDbId: import("zod").ZodString;
|
|
761
|
+
warning: import("zod").ZodString;
|
|
762
|
+
}, import("zod/v4/core").$strip>>;
|
|
763
|
+
}, import("zod/v4/core").$strip>, readonly [{
|
|
764
|
+
readonly reason: "images_unsupported";
|
|
765
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
|
|
766
|
+
readonly when: "BrAPI server does not advertise /images in /serverinfo";
|
|
767
|
+
readonly recovery: "Run brapi_server_info to inspect the advertised endpoints, or call brapi_connect with a different alias for a server that exposes /images.";
|
|
768
|
+
}]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
769
|
+
mode: import("zod").ZodEnum<{
|
|
770
|
+
delete: "delete";
|
|
771
|
+
list: "list";
|
|
772
|
+
summary: "summary";
|
|
773
|
+
load: "load";
|
|
774
|
+
}>;
|
|
775
|
+
datasetId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
776
|
+
cursor: import("zod").ZodOptional<import("zod").ZodString>;
|
|
777
|
+
limit: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
778
|
+
page: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
779
|
+
pageSize: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
780
|
+
columns: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
|
|
781
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
782
|
+
result: import("zod").ZodDiscriminatedUnion<[import("zod").ZodObject<{
|
|
783
|
+
mode: import("zod").ZodLiteral<"list">;
|
|
784
|
+
datasets: import("zod").ZodArray<import("zod").ZodObject<{
|
|
785
|
+
datasetId: import("zod").ZodString;
|
|
786
|
+
source: import("zod").ZodString;
|
|
787
|
+
baseUrl: import("zod").ZodString;
|
|
788
|
+
query: import("zod").ZodUnknown;
|
|
789
|
+
rowCount: import("zod").ZodNumber;
|
|
790
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
791
|
+
sizeBytes: import("zod").ZodNumber;
|
|
792
|
+
createdAt: import("zod").ZodString;
|
|
793
|
+
expiresAt: import("zod").ZodString;
|
|
794
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
795
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
796
|
+
}, import("zod/v4/core").$strip>>;
|
|
797
|
+
cursor: import("zod").ZodOptional<import("zod").ZodString>;
|
|
798
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
799
|
+
mode: import("zod").ZodLiteral<"summary">;
|
|
800
|
+
dataset: import("zod").ZodObject<{
|
|
801
|
+
datasetId: import("zod").ZodString;
|
|
802
|
+
source: import("zod").ZodString;
|
|
803
|
+
baseUrl: import("zod").ZodString;
|
|
804
|
+
query: import("zod").ZodUnknown;
|
|
805
|
+
rowCount: import("zod").ZodNumber;
|
|
806
|
+
columns: import("zod").ZodArray<import("zod").ZodString>;
|
|
807
|
+
sizeBytes: import("zod").ZodNumber;
|
|
808
|
+
createdAt: import("zod").ZodString;
|
|
809
|
+
expiresAt: import("zod").ZodString;
|
|
810
|
+
truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
811
|
+
maxRows: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
812
|
+
}, import("zod/v4/core").$strip>;
|
|
813
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
814
|
+
mode: import("zod").ZodLiteral<"load">;
|
|
815
|
+
datasetId: import("zod").ZodString;
|
|
816
|
+
page: import("zod").ZodNumber;
|
|
817
|
+
pageSize: import("zod").ZodNumber;
|
|
818
|
+
totalRows: import("zod").ZodNumber;
|
|
819
|
+
totalPages: import("zod").ZodNumber;
|
|
820
|
+
rows: import("zod").ZodArray<import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>>;
|
|
821
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
822
|
+
mode: import("zod").ZodLiteral<"delete">;
|
|
823
|
+
datasetId: import("zod").ZodString;
|
|
824
|
+
deleted: import("zod").ZodLiteral<true>;
|
|
825
|
+
}, import("zod/v4/core").$strip>], "mode">;
|
|
826
|
+
}, import("zod/v4/core").$strip>, readonly [{
|
|
827
|
+
readonly reason: "datasetid_required";
|
|
828
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;
|
|
829
|
+
readonly when: "Mode summary, load, or delete was selected without a datasetId";
|
|
830
|
+
readonly recovery: "Call mode=list first to discover available dataset IDs, then retry with one.";
|
|
831
|
+
}, {
|
|
832
|
+
readonly reason: "dataset_not_found";
|
|
833
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
|
|
834
|
+
readonly when: "Requested dataset is not present in the store (never existed or already expired)";
|
|
835
|
+
readonly recovery: "Run mode=list to confirm available datasets, or rerun the find_* tool that produced it.";
|
|
836
|
+
}, {
|
|
837
|
+
readonly reason: "dataset_rows_missing";
|
|
838
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
|
|
839
|
+
readonly when: "Dataset metadata is present but the row payload was lost or partially expired";
|
|
840
|
+
readonly recovery: "Delete the stale dataset via mode=delete and rerun the find_* tool that produced it.";
|
|
841
|
+
}]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
842
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
843
|
+
path: import("zod").ZodString;
|
|
844
|
+
params: import("zod").ZodOptional<import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnion<readonly [import("zod").ZodString, import("zod").ZodNumber, import("zod").ZodBoolean, import("zod").ZodArray<import("zod").ZodUnion<readonly [import("zod").ZodString, import("zod").ZodNumber]>>]>>>;
|
|
845
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
846
|
+
alias: import("zod").ZodString;
|
|
847
|
+
url: import("zod").ZodString;
|
|
848
|
+
path: import("zod").ZodString;
|
|
849
|
+
metadata: import("zod").ZodObject<{
|
|
850
|
+
pagination: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
851
|
+
currentPage: import("zod").ZodNumber;
|
|
852
|
+
pageSize: import("zod").ZodNumber;
|
|
853
|
+
totalCount: import("zod").ZodNumber;
|
|
854
|
+
totalPages: import("zod").ZodNumber;
|
|
855
|
+
}, import("zod/v4/core").$loose>>;
|
|
856
|
+
}, import("zod/v4/core").$loose>;
|
|
857
|
+
result: import("zod").ZodUnknown;
|
|
858
|
+
suggestion: import("zod").ZodOptional<import("zod").ZodString>;
|
|
859
|
+
}, import("zod/v4/core").$strip>, readonly [{
|
|
860
|
+
readonly reason: "cross_origin_path";
|
|
861
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;
|
|
862
|
+
readonly when: "path argument was a full URL instead of a relative BrAPI route";
|
|
863
|
+
readonly recovery: "Pass a path like \"/samples\" or \"/methods\" — the connection alias supplies the baseUrl.";
|
|
864
|
+
}]> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
865
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
866
|
+
noun: import("zod").ZodString;
|
|
867
|
+
body: import("zod").ZodRecord<import("zod").ZodString, import("zod").ZodUnknown>;
|
|
868
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
869
|
+
alias: import("zod").ZodString;
|
|
870
|
+
noun: import("zod").ZodString;
|
|
871
|
+
kind: import("zod").ZodEnum<{
|
|
872
|
+
sync: "sync";
|
|
873
|
+
async: "async";
|
|
874
|
+
}>;
|
|
875
|
+
searchResultsDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
876
|
+
metadata: import("zod").ZodObject<{
|
|
877
|
+
pagination: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
878
|
+
currentPage: import("zod").ZodNumber;
|
|
879
|
+
pageSize: import("zod").ZodNumber;
|
|
880
|
+
totalCount: import("zod").ZodNumber;
|
|
881
|
+
totalPages: import("zod").ZodNumber;
|
|
882
|
+
}, import("zod/v4/core").$loose>>;
|
|
883
|
+
}, import("zod/v4/core").$loose>;
|
|
884
|
+
result: import("zod").ZodUnknown;
|
|
885
|
+
suggestion: import("zod").ZodOptional<import("zod").ZodString>;
|
|
886
|
+
}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
887
|
+
germplasmDbIds: import("zod").ZodArray<import("zod").ZodString>;
|
|
888
|
+
direction: import("zod").ZodDefault<import("zod").ZodEnum<{
|
|
889
|
+
ancestors: "ancestors";
|
|
890
|
+
descendants: "descendants";
|
|
891
|
+
both: "both";
|
|
892
|
+
}>>;
|
|
893
|
+
maxDepth: import("zod").ZodDefault<import("zod").ZodNumber>;
|
|
894
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
895
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
896
|
+
alias: import("zod").ZodString;
|
|
897
|
+
direction: import("zod").ZodEnum<{
|
|
898
|
+
ancestors: "ancestors";
|
|
899
|
+
descendants: "descendants";
|
|
900
|
+
both: "both";
|
|
901
|
+
}>;
|
|
902
|
+
maxDepth: import("zod").ZodNumber;
|
|
903
|
+
nodes: import("zod").ZodArray<import("zod").ZodObject<{
|
|
904
|
+
germplasmDbId: import("zod").ZodString;
|
|
905
|
+
germplasmName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
906
|
+
depth: import("zod").ZodNumber;
|
|
907
|
+
isRoot: import("zod").ZodBoolean;
|
|
908
|
+
}, import("zod/v4/core").$strip>>;
|
|
909
|
+
edges: import("zod").ZodArray<import("zod").ZodObject<{
|
|
910
|
+
from: import("zod").ZodString;
|
|
911
|
+
to: import("zod").ZodString;
|
|
912
|
+
relationship: import("zod").ZodEnum<{
|
|
913
|
+
parent: "parent";
|
|
914
|
+
child: "child";
|
|
915
|
+
}>;
|
|
916
|
+
parentType: import("zod").ZodOptional<import("zod").ZodString>;
|
|
917
|
+
}, import("zod/v4/core").$strip>>;
|
|
918
|
+
depthReached: import("zod").ZodNumber;
|
|
919
|
+
rootCount: import("zod").ZodNumber;
|
|
920
|
+
leafCount: import("zod").ZodNumber;
|
|
921
|
+
cycleCount: import("zod").ZodNumber;
|
|
922
|
+
deadEndCount: import("zod").ZodNumber;
|
|
923
|
+
truncated: import("zod").ZodBoolean;
|
|
924
|
+
warnings: import("zod").ZodArray<import("zod").ZodString>;
|
|
925
|
+
}, import("zod/v4/core").$strip>, undefined>)[];
|
|
926
|
+
/** Write tools — registered only when `BRAPI_ENABLE_WRITES=true`. */
|
|
927
|
+
export declare const writeToolDefinitions: import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
928
|
+
alias: import("zod").ZodOptional<import("zod").ZodString>;
|
|
929
|
+
studyDbId: import("zod").ZodString;
|
|
930
|
+
observations: import("zod").ZodArray<import("zod").ZodObject<{
|
|
931
|
+
observationDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
932
|
+
observationUnitDbId: import("zod").ZodString;
|
|
933
|
+
observationVariableDbId: import("zod").ZodString;
|
|
934
|
+
value: import("zod").ZodString;
|
|
935
|
+
collector: import("zod").ZodOptional<import("zod").ZodString>;
|
|
936
|
+
observationTimeStamp: import("zod").ZodOptional<import("zod").ZodString>;
|
|
937
|
+
season: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
938
|
+
seasonDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
939
|
+
year: import("zod").ZodOptional<import("zod").ZodString>;
|
|
940
|
+
season: import("zod").ZodOptional<import("zod").ZodString>;
|
|
941
|
+
}, import("zod/v4/core").$strip>>;
|
|
942
|
+
geoCoordinates: import("zod").ZodOptional<import("zod").ZodObject<{
|
|
943
|
+
type: import("zod").ZodLiteral<"Feature">;
|
|
944
|
+
geometry: import("zod").ZodObject<{
|
|
945
|
+
type: import("zod").ZodLiteral<"Point">;
|
|
946
|
+
coordinates: import("zod").ZodArray<import("zod").ZodNumber>;
|
|
947
|
+
}, import("zod/v4/core").$strip>;
|
|
948
|
+
}, import("zod/v4/core").$strip>>;
|
|
949
|
+
}, import("zod/v4/core").$strip>>;
|
|
950
|
+
mode: import("zod").ZodDefault<import("zod").ZodEnum<{
|
|
951
|
+
preview: "preview";
|
|
952
|
+
apply: "apply";
|
|
953
|
+
}>>;
|
|
954
|
+
force: import("zod").ZodDefault<import("zod").ZodBoolean>;
|
|
955
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
956
|
+
alias: import("zod").ZodString;
|
|
957
|
+
result: import("zod").ZodDiscriminatedUnion<[import("zod").ZodObject<{
|
|
958
|
+
mode: import("zod").ZodLiteral<"preview">;
|
|
959
|
+
studyDbId: import("zod").ZodString;
|
|
960
|
+
studyName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
961
|
+
valid: import("zod").ZodNumber;
|
|
962
|
+
invalid: import("zod").ZodNumber;
|
|
963
|
+
routing: import("zod").ZodObject<{
|
|
964
|
+
postCount: import("zod").ZodNumber;
|
|
965
|
+
putCount: import("zod").ZodNumber;
|
|
966
|
+
}, import("zod/v4/core").$strip>;
|
|
967
|
+
perRowWarnings: import("zod").ZodArray<import("zod").ZodObject<{
|
|
968
|
+
rowIndex: import("zod").ZodNumber;
|
|
969
|
+
observationVariableDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
970
|
+
observationUnitDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
971
|
+
warning: import("zod").ZodString;
|
|
972
|
+
}, import("zod/v4/core").$strip>>;
|
|
973
|
+
knownVariableCount: import("zod").ZodNumber;
|
|
974
|
+
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
975
|
+
mode: import("zod").ZodLiteral<"apply">;
|
|
976
|
+
studyDbId: import("zod").ZodString;
|
|
977
|
+
studyName: import("zod").ZodOptional<import("zod").ZodString>;
|
|
978
|
+
posted: import("zod").ZodArray<import("zod").ZodObject<{
|
|
979
|
+
observationDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
980
|
+
observationUnitDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
981
|
+
observationVariableDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
982
|
+
value: import("zod").ZodOptional<import("zod").ZodString>;
|
|
983
|
+
}, import("zod/v4/core").$strip>>;
|
|
984
|
+
updated: import("zod").ZodArray<import("zod").ZodObject<{
|
|
985
|
+
observationDbId: import("zod").ZodString;
|
|
986
|
+
observationUnitDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
987
|
+
observationVariableDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
988
|
+
value: import("zod").ZodOptional<import("zod").ZodString>;
|
|
989
|
+
}, import("zod/v4/core").$strip>>;
|
|
990
|
+
studyObservationCount: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
991
|
+
latestObservationTimestamp: import("zod").ZodOptional<import("zod").ZodString>;
|
|
992
|
+
perRowWarnings: import("zod").ZodArray<import("zod").ZodObject<{
|
|
993
|
+
rowIndex: import("zod").ZodNumber;
|
|
994
|
+
observationVariableDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
995
|
+
observationUnitDbId: import("zod").ZodOptional<import("zod").ZodString>;
|
|
996
|
+
warning: import("zod").ZodString;
|
|
997
|
+
}, import("zod/v4/core").$strip>>;
|
|
998
|
+
}, import("zod/v4/core").$strip>], "mode">;
|
|
999
|
+
}, import("zod/v4/core").$strip>, readonly [{
|
|
1000
|
+
readonly reason: "observations_unsupported";
|
|
1001
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;
|
|
1002
|
+
readonly when: "BrAPI server does not advertise /observations";
|
|
1003
|
+
readonly recovery: "Run brapi_server_info to inspect the advertised endpoints, or call brapi_connect with a different alias for a server that exposes /observations.";
|
|
1004
|
+
}, {
|
|
1005
|
+
readonly reason: "study_not_found";
|
|
1006
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
|
|
1007
|
+
readonly when: "Upstream returned no study record for the requested studyDbId";
|
|
1008
|
+
readonly recovery: "Verify the studyDbId on the target server, or run brapi_find_studies to discover valid IDs before retrying.";
|
|
1009
|
+
}, {
|
|
1010
|
+
readonly reason: "post_unsupported";
|
|
1011
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;
|
|
1012
|
+
readonly when: "Server does not advertise POST on /observations but new rows were submitted";
|
|
1013
|
+
readonly recovery: "Remove the rows that lack observationDbId (those are the new rows) before retrying, or connect to a different server that supports POST on /observations.";
|
|
1014
|
+
}, {
|
|
1015
|
+
readonly reason: "put_unsupported";
|
|
1016
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;
|
|
1017
|
+
readonly when: "Server does not advertise PUT on /observations but update rows were submitted";
|
|
1018
|
+
readonly recovery: "Connect to a different server that supports PUT on /observations — dropping observationDbId would route as POST and create duplicates instead of updating the existing rows.";
|
|
1019
|
+
}, {
|
|
1020
|
+
readonly reason: "elicit_unavailable";
|
|
1021
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Forbidden;
|
|
1022
|
+
readonly when: "Apply mode invoked but client does not expose ctx.elicit and force was false";
|
|
1023
|
+
readonly recovery: "Set force=true only with explicit user authorization, or use a client that supports elicitation.";
|
|
1024
|
+
}, {
|
|
1025
|
+
readonly reason: "user_declined";
|
|
1026
|
+
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Forbidden;
|
|
1027
|
+
readonly when: "User declined the elicitation prompt for the apply write";
|
|
1028
|
+
readonly recovery: "Re-run the tool when the user is ready to confirm the write.";
|
|
1029
|
+
}]>[];
|
|
1030
|
+
//# sourceMappingURL=index.d.ts.map
|