@cornerstonejs/tools 1.78.1 → 2.0.0-beta.10

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/contourComputationStrategies.d.ts

@@ -1,8 +0,0 @@
-import { PolySegConversionOptions } from '../../../../types';
-import { SurfaceClipResult } from '../../helpers/clipAndCacheSurfacesForViewport';
-export declare type RawContourData = Map<number, SurfaceClipResult[]>;
-export declare function computeContourData(segmentationId: string, options?: PolySegConversionOptions): Promise<{
-    annotationUIDsMap: Map<number, Set<string>>;
-}>;
-declare function computeContourFromLabelmapSegmentation(segmentationId: any, options?: PolySegConversionOptions): Promise<RawContourData>;
-export { computeContourFromLabelmapSegmentation };

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/contourComputationStrategies.js

@@ -1,121 +0,0 @@
-"use strict";
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.computeContourFromLabelmapSegmentation = exports.computeContourData = void 0;
-const core_1 = require("@cornerstonejs/core");
-const segmentation_1 = require("../../../../utilities/segmentation");
-const segmentationState_1 = require("../../segmentationState");
-const surfaceComputationStrategies_1 = require("../Surface/surfaceComputationStrategies");
-const clipAndCacheSurfacesForViewport_1 = require("../../helpers/clipAndCacheSurfacesForViewport");
-const extractContourData_1 = require("./utils/extractContourData");
-const createAndAddContourSegmentationsFromClippedSurfaces_1 = require("./utils/createAndAddContourSegmentationsFromClippedSurfaces");
-const ToolGroupManager_1 = require("../../../../store/ToolGroupManager");
-function computeContourData(segmentationId, options = {}) {
-    var _a, _b;
-    return __awaiter(this, void 0, void 0, function* () {
-        const segmentIndices = ((_a = options.segmentIndices) === null || _a === void 0 ? void 0 : _a.length)
-            ? options.segmentIndices
-            : (0, segmentation_1.getUniqueSegmentIndices)(segmentationId);
-        let rawContourData;
-        const segmentation = (0, segmentationState_1.getSegmentation)(segmentationId);
-        const representationData = segmentation.representationData;
-        try {
-            if (representationData.SURFACE) {
-                rawContourData = yield computeContourFromSurfaceSegmentation(segmentationId, Object.assign({ segmentIndices }, options));
-            }
-            else if (representationData.LABELMAP) {
-                rawContourData = yield computeContourFromLabelmapSegmentation(segmentationId, Object.assign({ segmentIndices }, options));
-            }
-        }
-        catch (error) {
-            console.error(error);
-            throw error;
-        }
-        if (!rawContourData) {
-            throw new Error('Not enough data to convert to contour, currently only support converting volume labelmap to contour if available');
-        }
-        const { viewport, segmentationRepresentationUID } = options;
-        const annotationUIDsMap = (0, createAndAddContourSegmentationsFromClippedSurfaces_1.createAndAddContourSegmentationsFromClippedSurfaces)(rawContourData, viewport, segmentationId);
-        const toolGroupId = (_b = (0, ToolGroupManager_1.getToolGroupForViewport)(viewport.id)) === null || _b === void 0 ? void 0 : _b.id;
-        (0, segmentationState_1.setSegmentationRepresentationSpecificConfig)(toolGroupId, segmentationRepresentationUID, {
-            CONTOUR: {
-                fillAlpha: 0,
-            },
-        });
-        return {
-            annotationUIDsMap,
-        };
-    });
-}
-exports.computeContourData = computeContourData;
-function computeContourFromLabelmapSegmentation(segmentationId, options = {}) {
-    return __awaiter(this, void 0, void 0, function* () {
-        if (!options.viewport) {
-            throw new Error('Viewport is required to compute contour from labelmap');
-        }
-        const results = yield (0, surfaceComputationStrategies_1.computeSurfaceFromLabelmapSegmentation)(segmentationId, options);
-        if (!(results === null || results === void 0 ? void 0 : results.length)) {
-            console.error('Failed to convert labelmap to surface or labelmap is empty');
-            return;
-        }
-        const { viewport, segmentationRepresentationUID } = options;
-        const pointsAndPolys = results.map((surface) => {
-            return {
-                id: surface.segmentIndex.toString(),
-                points: surface.data.points,
-                polys: surface.data.polys,
-                segmentIndex: surface.segmentIndex,
-            };
-        });
-        const polyDataCache = yield (0, clipAndCacheSurfacesForViewport_1.clipAndCacheSurfacesForViewport)(pointsAndPolys, viewport, segmentationRepresentationUID);
-        const rawResults = (0, extractContourData_1.extractContourData)(polyDataCache);
-        return rawResults;
-    });
-}
-exports.computeContourFromLabelmapSegmentation = computeContourFromLabelmapSegmentation;
-function computeContourFromSurfaceSegmentation(segmentationId, options = {}) {
-    var _a;
-    return __awaiter(this, void 0, void 0, function* () {
-        if (!options.viewport) {
-            throw new Error('Viewport is required to compute contour from surface');
-        }
-        const { viewport, segmentationRepresentationUID } = options;
-        const segmentIndices = ((_a = options.segmentIndices) === null || _a === void 0 ? void 0 : _a.length)
-            ? options.segmentIndices
-            : (0, segmentation_1.getUniqueSegmentIndices)(segmentationId);
-        const segmentIndexToSurfaceId = new Map();
-        const surfaceIdToSegmentIndex = new Map();
-        const segmentation = (0, segmentationState_1.getSegmentation)(segmentationId);
-        const representationData = segmentation.representationData.SURFACE;
-        const surfacesInfo = [];
-        representationData.geometryIds.forEach((geometryId, segmentIndex) => {
-            var _a;
-            if (segmentIndices.includes(segmentIndex)) {
-                segmentIndexToSurfaceId.set(segmentIndex, geometryId);
-                const surface = (_a = core_1.cache.getGeometry(geometryId)) === null || _a === void 0 ? void 0 : _a.data;
-                if (surface) {
-                    surfacesInfo.push({
-                        id: geometryId,
-                        points: surface.getPoints(),
-                        polys: surface.getPolys(),
-                    });
-                }
-            }
-        });
-        segmentIndexToSurfaceId.forEach((surfaceId, segmentIndex) => {
-            surfaceIdToSegmentIndex.set(surfaceId, segmentIndex);
-        });
-        const polyDataCache = yield (0, clipAndCacheSurfacesForViewport_1.clipAndCacheSurfacesForViewport)(surfacesInfo, viewport, segmentationRepresentationUID);
-        const rawResults = (0, extractContourData_1.extractContourData)(polyDataCache, surfaceIdToSegmentIndex);
-        return rawResults;
-    });
-}
-//# sourceMappingURL=contourComputationStrategies.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/contourComputationStrategies.js.map

@@ -1 +0,0 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/createAndAddContourSegmentationsFromClippedSurfaces.d.ts

@@ -1,3 +0,0 @@
-import { RawContourData } from '../contourComputationStrategies';
-import { type Types } from '@cornerstonejs/core';
-export declare function createAndAddContourSegmentationsFromClippedSurfaces(rawContourData: RawContourData, viewport: Types.IViewport, segmentationId: string): Map<number, Set<string>>;

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/createAndAddContourSegmentationsFromClippedSurfaces.js

@@ -1,73 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.createAndAddContourSegmentationsFromClippedSurfaces = void 0;
-const tools_1 = require("../../../../../tools");
-const annotationState_1 = require("../../../../annotation/annotationState");
-const core_1 = require("@cornerstonejs/core");
-function createAndAddContourSegmentationsFromClippedSurfaces(rawContourData, viewport, segmentationId) {
-    const annotationUIDsMap = new Map();
-    for (const [segmentIndex, contoursData] of rawContourData) {
-        for (const contourData of contoursData) {
-            const { points } = contourData;
-            const { lineSegments, linesNumberOfPoints } = _extractLineSegments(contourData);
-            for (let i = 0; i < lineSegments.length; i++) {
-                const line = lineSegments[i];
-                const polyline = [];
-                for (let j = 0; j < linesNumberOfPoints[i]; j++) {
-                    const pointIndex = line[j];
-                    polyline.push([
-                        points[3 * pointIndex],
-                        points[3 * pointIndex + 1],
-                        points[3 * pointIndex + 2],
-                    ]);
-                }
-                if (polyline.length < 3) {
-                    continue;
-                }
-                const contourSegmentationAnnotation = {
-                    annotationUID: core_1.utilities.uuidv4(),
-                    data: {
-                        contour: {
-                            closed: true,
-                            polyline,
-                        },
-                        segmentation: {
-                            segmentationId,
-                            segmentIndex,
-                        },
-                        handles: {},
-                    },
-                    handles: {},
-                    highlighted: false,
-                    autoGenerated: false,
-                    invalidated: false,
-                    isLocked: false,
-                    isVisible: true,
-                    metadata: Object.assign({ toolName: tools_1.PlanarFreehandContourSegmentationTool.toolName }, viewport.getViewReference()),
-                };
-                (0, annotationState_1.addAnnotation)(contourSegmentationAnnotation, viewport.element);
-                const currentSet = annotationUIDsMap.get(segmentIndex) || new Set();
-                currentSet.add(contourSegmentationAnnotation.annotationUID);
-                annotationUIDsMap.set(segmentIndex, currentSet);
-            }
-        }
-    }
-    return annotationUIDsMap;
-}
-exports.createAndAddContourSegmentationsFromClippedSurfaces = createAndAddContourSegmentationsFromClippedSurfaces;
-const _extractLineSegments = (contourData) => {
-    const { numberOfCells, lines } = contourData;
-    const lineSegments = [];
-    const linesNumberOfPoints = [];
-    for (let i = 0; i < lines.length;) {
-        const pointsInLine = lines[i];
-        linesNumberOfPoints.push(pointsInLine);
-        lineSegments.push(lines.slice(i + 1, i + pointsInLine + 1));
-        i += pointsInLine + 1;
-        if (lineSegments.length === numberOfCells) {
-            break;
-        }
-    }
-    return { lineSegments, linesNumberOfPoints };
-};
-//# sourceMappingURL=createAndAddContourSegmentationsFromClippedSurfaces.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/createAndAddContourSegmentationsFromClippedSurfaces.js.map

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package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/extractContourData.d.ts

@@ -1,3 +0,0 @@
-import { PolyDataClipCacheType } from '../../../helpers/clipAndCacheSurfacesForViewport';
-import { RawContourData } from '../contourComputationStrategies';
-export declare function extractContourData(polyDataCache: PolyDataClipCacheType, segmentIndexMap?: Map<string, number>): RawContourData;

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/extractContourData.js

@@ -1,25 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.extractContourData = void 0;
-function extractContourData(polyDataCache, segmentIndexMap) {
-    const rawResults = new Map();
-    for (const [cacheId, intersectionInfo] of polyDataCache) {
-        const surfaceId = cacheId.split('_')[1];
-        for (const [_, result] of intersectionInfo) {
-            if (!result) {
-                continue;
-            }
-            const segmentIndex = Number(surfaceId) || (segmentIndexMap === null || segmentIndexMap === void 0 ? void 0 : segmentIndexMap.get(surfaceId));
-            if (!segmentIndex) {
-                continue;
-            }
-            if (!rawResults.has(segmentIndex)) {
-                rawResults.set(segmentIndex, []);
-            }
-            rawResults.get(segmentIndex).push(result);
-        }
-    }
-    return rawResults;
-}
-exports.extractContourData = extractContourData;
-//# sourceMappingURL=extractContourData.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/extractContourData.js.map

@@ -1 +0,0 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/updateContoursOnCameraModified.d.ts

@@ -1 +0,0 @@
-export declare function updateContoursOnCameraModified(surfacesInfo: any, viewport: any, segmentationRepresentationUID: any): void;

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/updateContoursOnCameraModified.js

@@ -1,41 +0,0 @@
-"use strict";
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.updateContoursOnCameraModified = void 0;
-const core_1 = require("@cornerstonejs/core");
-const extractContourData_1 = require("./extractContourData");
-const clipAndCacheSurfacesForViewport_1 = require("../../../helpers/clipAndCacheSurfacesForViewport");
-const createAndAddContourSegmentationsFromClippedSurfaces_1 = require("./createAndAddContourSegmentationsFromClippedSurfaces");
-const currentViewportNormal = new Map();
-function updateContoursOnCameraModified(surfacesInfo, viewport, segmentationRepresentationUID) {
-    function cameraModifiedCallback(evt) {
-        return __awaiter(this, void 0, void 0, function* () {
-            const { camera } = evt.detail;
-            const { viewPlaneNormal } = camera;
-            const surface1 = surfacesInfo[0];
-            const currentNormal = currentViewportNormal.get(surface1.id);
-            if (core_1.utilities.isEqual(viewPlaneNormal, currentNormal)) {
-                return;
-            }
-            currentViewportNormal.set(surface1.id, viewPlaneNormal);
-            const polyDataCache = yield (0, clipAndCacheSurfacesForViewport_1.clipAndCacheSurfacesForViewport)(surfacesInfo, viewport, segmentationRepresentationUID);
-            const results = (0, extractContourData_1.extractContourData)(polyDataCache);
-            (0, createAndAddContourSegmentationsFromClippedSurfaces_1.createAndAddContourSegmentationsFromClippedSurfaces)(results, viewport, segmentationRepresentationUID);
-            viewport.render();
-        });
-    }
-    const camera = viewport.getCamera();
-    currentViewportNormal.set(surfacesInfo[0].id, camera.viewPlaneNormal);
-    viewport.element.removeEventListener(core_1.Enums.Events.CAMERA_MODIFIED, cameraModifiedCallback);
-    viewport.element.addEventListener(core_1.Enums.Events.CAMERA_MODIFIED);
-}
-exports.updateContoursOnCameraModified = updateContoursOnCameraModified;
-//# sourceMappingURL=updateContoursOnCameraModified.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Contour/utils/updateContoursOnCameraModified.js.map

@@ -1 +0,0 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.d.ts

@@ -1,2 +0,0 @@
-import { PolySegConversionOptions } from '../../../../types';
-export declare function computeAndAddLabelmapRepresentation(segmentationId: string, options?: PolySegConversionOptions): Promise<import("./labelmapComputationStrategies").RawLabelmapData>;

package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js

@@ -1,11 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.computeAndAddLabelmapRepresentation = void 0;
-const enums_1 = require("../../../../enums");
-const computeAndAddRepresentation_1 = require("../computeAndAddRepresentation");
-const labelmapComputationStrategies_1 = require("./labelmapComputationStrategies");
-function computeAndAddLabelmapRepresentation(segmentationId, options = {}) {
-    return (0, computeAndAddRepresentation_1.computeAndAddRepresentation)(segmentationId, enums_1.SegmentationRepresentations.Labelmap, () => (0, labelmapComputationStrategies_1.computeLabelmapData)(segmentationId, options), () => undefined);
-}
-exports.computeAndAddLabelmapRepresentation = computeAndAddLabelmapRepresentation;
-//# sourceMappingURL=computeAndAddLabelmapRepresentation.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js.map

@@ -1 +0,0 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.d.ts

@@ -1,7 +0,0 @@
-import { ContourSegmentationData, PolySegConversionOptions } from '../../../../types';
-export declare function convertContourToVolumeLabelmap(contourRepresentationData: ContourSegmentationData, options?: PolySegConversionOptions): Promise<{
-    volumeId: string;
-}>;
-export declare function convertContourToStackLabelmap(contourRepresentationData: ContourSegmentationData, options?: PolySegConversionOptions): Promise<{
-    imageIdReferenceMap: Map<any, any>;
-}>;

package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.js

@@ -1,174 +0,0 @@
-"use strict";
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.convertContourToStackLabelmap = exports.convertContourToVolumeLabelmap = void 0;
-const gl_matrix_1 = require("gl-matrix");
-const core_1 = require("@cornerstonejs/core");
-const __1 = require("../../..");
-const enums_1 = require("../../../../enums");
-const workerManager = (0, core_1.getWebWorkerManager)();
-const triggerWorkerProgress = (eventTarget, progress) => {
-    (0, core_1.triggerEvent)(eventTarget, core_1.Enums.Events.WEB_WORKER_PROGRESS, {
-        progress,
-        type: enums_1.WorkerTypes.POLYSEG_CONTOUR_TO_LABELMAP,
-    });
-};
-function convertContourToVolumeLabelmap(contourRepresentationData, options = {}) {
-    return __awaiter(this, void 0, void 0, function* () {
-        const { viewport } = options;
-        const imageIds = core_1.utilities.getViewportImageIds(viewport);
-        if (!imageIds) {
-            throw new Error('No imageIds found, labelmap computation from contour requires viewports with imageIds');
-        }
-        const segmentationVolumeId = core_1.utilities.uuidv4();
-        const volumeProps = core_1.utilities.generateVolumePropsFromImageIds(imageIds, segmentationVolumeId);
-        const { metadata, dimensions, origin, direction, spacing, scalarData } = volumeProps;
-        const segmentationVolume = yield core_1.volumeLoader.createLocalSegmentationVolume({
-            dimensions,
-            origin,
-            direction,
-            spacing,
-            metadata,
-            imageIds: imageIds.map((imageId) => `generated://${imageId}`),
-            referencedImageIds: imageIds,
-        }, segmentationVolumeId);
-        const { segmentIndices, annotationUIDsInSegmentMap } = _getAnnotationMapFromSegmentation(contourRepresentationData, options);
-        triggerWorkerProgress(core_1.eventTarget, 0);
-        const newScalarData = yield workerManager.executeTask('polySeg', 'convertContourToVolumeLabelmap', {
-            segmentIndices,
-            dimensions,
-            scalarData,
-            origin,
-            direction,
-            spacing,
-            annotationUIDsInSegmentMap,
-        }, {
-            callbacks: [
-                (progress) => {
-                    triggerWorkerProgress(core_1.eventTarget, progress);
-                },
-            ],
-        });
-        triggerWorkerProgress(core_1.eventTarget, 1);
-        segmentationVolume.imageData
-            .getPointData()
-            .getScalars()
-            .setData(newScalarData);
-        segmentationVolume.imageData.modified();
-        segmentationVolume.modified();
-        return {
-            volumeId: segmentationVolume.volumeId,
-        };
-    });
-}
-exports.convertContourToVolumeLabelmap = convertContourToVolumeLabelmap;
-function convertContourToStackLabelmap(contourRepresentationData, options = {}) {
-    return __awaiter(this, void 0, void 0, function* () {
-        if (!options.viewport) {
-            throw new Error('No viewport provided, labelmap computation from contour requires viewports');
-        }
-        const viewport = options.viewport;
-        const imageIds = viewport.getImageIds();
-        if (!imageIds) {
-            throw new Error('No imageIds found, labelmap computation from contour requires viewports with imageIds');
-        }
-        imageIds.forEach((imageId) => {
-            if (!core_1.cache.getImageLoadObject(imageId)) {
-                throw new Error('ImageIds must be cached before converting contour to labelmap');
-            }
-        });
-        const { imageIds: segmentationImageIds } = yield core_1.imageLoader.createAndCacheDerivedSegmentationImages(imageIds);
-        const { segmentIndices, annotationUIDsInSegmentMap } = _getAnnotationMapFromSegmentation(contourRepresentationData, options);
-        const segmentationsInfo = new Map();
-        segmentationImageIds.forEach((segImageId, index) => {
-            const segImage = core_1.cache.getImage(segImageId);
-            const imagePlaneModule = core_1.metaData.get(core_1.Enums.MetadataModules.IMAGE_PLANE, segImageId);
-            let { columnCosines, rowCosines, rowPixelSpacing, columnPixelSpacing, imagePositionPatient, } = imagePlaneModule;
-            columnCosines = columnCosines !== null && columnCosines !== void 0 ? columnCosines : [0, 1, 0];
-            rowCosines = rowCosines !== null && rowCosines !== void 0 ? rowCosines : [1, 0, 0];
-            rowPixelSpacing = rowPixelSpacing !== null && rowPixelSpacing !== void 0 ? rowPixelSpacing : 1;
-            columnPixelSpacing = columnPixelSpacing !== null && columnPixelSpacing !== void 0 ? columnPixelSpacing : 1;
-            imagePositionPatient = imagePositionPatient !== null && imagePositionPatient !== void 0 ? imagePositionPatient : [0, 0, 0];
-            const rowCosineVec = gl_matrix_1.vec3.fromValues(rowCosines[0], rowCosines[1], rowCosines[2]);
-            const colCosineVec = gl_matrix_1.vec3.fromValues(columnCosines[0], columnCosines[1], columnCosines[2]);
-            const scanAxisNormal = gl_matrix_1.vec3.create();
-            gl_matrix_1.vec3.cross(scanAxisNormal, rowCosineVec, colCosineVec);
-            const direction = [...rowCosineVec, ...colCosineVec, ...scanAxisNormal];
-            const spacing = [rowPixelSpacing, columnPixelSpacing, 1];
-            const origin = imagePositionPatient;
-            segmentationsInfo.set(imageIds[index], {
-                direction,
-                spacing,
-                origin,
-                scalarData: segImage.getPixelData(),
-                imageId: segImageId,
-                dimensions: [segImage.width, segImage.height, 1],
-            });
-        });
-        triggerWorkerProgress(core_1.eventTarget, 0);
-        const newSegmentationsScalarData = yield workerManager.executeTask('polySeg', 'convertContourToStackLabelmap', {
-            segmentationsInfo,
-            annotationUIDsInSegmentMap,
-            segmentIndices,
-        }, {
-            callbacks: [
-                (progress) => {
-                    triggerWorkerProgress(core_1.eventTarget, progress);
-                },
-            ],
-        });
-        triggerWorkerProgress(core_1.eventTarget, 1);
-        const imageIdReferenceMap = new Map();
-        newSegmentationsScalarData.forEach(({ scalarData }, referencedImageId) => {
-            var _a, _b;
-            const segmentationInfo = segmentationsInfo.get(referencedImageId);
-            const { imageId: segImageId } = segmentationInfo;
-            const segImage = core_1.cache.getImage(segImageId);
-            segImage.getPixelData().set(scalarData);
-            (_b = (_a = segImage.imageFrame) === null || _a === void 0 ? void 0 : _a.pixelData) === null || _b === void 0 ? void 0 : _b.set(scalarData);
-            imageIdReferenceMap.set(referencedImageId, segImageId);
-        });
-        return {
-            imageIdReferenceMap,
-        };
-    });
-}
-exports.convertContourToStackLabelmap = convertContourToStackLabelmap;
-function _getAnnotationMapFromSegmentation(contourRepresentationData, options = {}) {
-    var _a;
-    const annotationMap = contourRepresentationData.annotationUIDsMap;
-    const segmentIndices = ((_a = options.segmentIndices) === null || _a === void 0 ? void 0 : _a.length)
-        ? options.segmentIndices
-        : Array.from(annotationMap.keys());
-    const annotationUIDsInSegmentMap = new Map();
-    segmentIndices.forEach((index) => {
-        const annotationUIDsInSegment = annotationMap.get(index);
-        let uids = Array.from(annotationUIDsInSegment);
-        uids = uids.filter((uid) => !(0, __1.getAnnotation)(uid).parentAnnotationUID);
-        const annotations = uids.map((uid) => {
-            var _a;
-            const annotation = (0, __1.getAnnotation)(uid);
-            const hasChildAnnotations = (_a = annotation.childAnnotationUIDs) === null || _a === void 0 ? void 0 : _a.length;
-            return {
-                polyline: annotation.data.contour.polyline,
-                referencedImageId: annotation.metadata.referencedImageId,
-                holesPolyline: hasChildAnnotations &&
-                    annotation.childAnnotationUIDs.map((childUID) => {
-                        const childAnnotation = (0, __1.getAnnotation)(childUID);
-                        return childAnnotation.data.contour.polyline;
-                    }),
-            };
-        });
-        annotationUIDsInSegmentMap.set(index, annotations);
-    });
-    return { segmentIndices, annotationUIDsInSegmentMap };
-}
-//# sourceMappingURL=convertContourToLabelmap.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.js.map

@@ -1 +0,0 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.d.ts

@@ -1,6 +0,0 @@
-import { Types } from '@cornerstonejs/core';
-import { SurfaceSegmentationData } from '../../../../types/SurfaceTypes';
-export declare function convertSurfaceToVolumeLabelmap(surfaceRepresentationData: SurfaceSegmentationData, segmentationVolume: Types.IImageVolume): Promise<{
-    volumeId: string;
-}>;
-export declare function convertSurfaceToStackLabelmap(): Promise<void>;

package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js

@@ -1,72 +0,0 @@
-"use strict";
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.convertSurfaceToStackLabelmap = exports.convertSurfaceToVolumeLabelmap = void 0;
-const core_1 = require("@cornerstonejs/core");
-const enums_1 = require("../../../../enums");
-const workerManager = (0, core_1.getWebWorkerManager)();
-const triggerWorkerProgress = (eventTarget, progress) => {
-    (0, core_1.triggerEvent)(eventTarget, core_1.Enums.Events.WEB_WORKER_PROGRESS, {
-        progress,
-        type: enums_1.WorkerTypes.POLYSEG_SURFACE_TO_LABELMAP,
-    });
-};
-function convertSurfaceToVolumeLabelmap(surfaceRepresentationData, segmentationVolume) {
-    return __awaiter(this, void 0, void 0, function* () {
-        const { geometryIds } = surfaceRepresentationData;
-        if (!(geometryIds === null || geometryIds === void 0 ? void 0 : geometryIds.size)) {
-            throw new Error('No geometry IDs found for surface representation');
-        }
-        const segmentsInfo = new Map();
-        geometryIds.forEach((geometryId, segmentIndex) => {
-            const geometry = core_1.cache.getGeometry(geometryId);
-            const geometryData = geometry.data;
-            const points = geometryData.getPoints();
-            const polys = geometryData.getPolys();
-            segmentsInfo.set(segmentIndex, {
-                points,
-                polys,
-            });
-        });
-        const { dimensions, direction, origin, spacing } = segmentationVolume;
-        triggerWorkerProgress(core_1.eventTarget, 0);
-        const newScalarData = yield workerManager.executeTask('polySeg', 'convertSurfacesToVolumeLabelmap', {
-            segmentsInfo,
-            dimensions,
-            spacing,
-            direction,
-            origin,
-        }, {
-            callbacks: [
-                (progress) => {
-                    triggerWorkerProgress(core_1.eventTarget, progress);
-                },
-            ],
-        });
-        triggerWorkerProgress(core_1.eventTarget, 1);
-        segmentationVolume.imageData
-            .getPointData()
-            .getScalars()
-            .setData(newScalarData);
-        segmentationVolume.imageData.modified();
-        segmentationVolume.modified();
-        return {
-            volumeId: segmentationVolume.volumeId,
-        };
-    });
-}
-exports.convertSurfaceToVolumeLabelmap = convertSurfaceToVolumeLabelmap;
-function convertSurfaceToStackLabelmap() {
-    return __awaiter(this, void 0, void 0, function* () {
-    });
-}
-exports.convertSurfaceToStackLabelmap = convertSurfaceToStackLabelmap;
-//# sourceMappingURL=convertSurfaceToLabelmap.js.map

package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js.map

@@ -1 +0,0 @@
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package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.d.ts

@@ -1,6 +0,0 @@
-import { LabelmapSegmentationDataStack, LabelmapSegmentationDataVolume } from '../../../../types/LabelmapTypes';
-import { PolySegConversionOptions } from '../../../../types';
-export declare type RawLabelmapData = LabelmapSegmentationDataVolume | LabelmapSegmentationDataStack;
-export declare function computeLabelmapData(segmentationId: string, options?: PolySegConversionOptions): Promise<RawLabelmapData>;
-declare function computeLabelmapFromContourSegmentation(segmentationId: any, options?: PolySegConversionOptions): Promise<LabelmapSegmentationDataVolume | LabelmapSegmentationDataStack>;
-export { computeLabelmapFromContourSegmentation };