@cornerstonejs/tools 1.57.2 → 1.58.1

package/dist/esm/tools/displayTools/Surface/surfaceDisplay.js

@@ -1,24 +1,10 @@
-import vtkPolyData from '@kitware/vtk.js/Common/DataModel/PolyData';
-import vtkCellArray from '@kitware/vtk.js/Common/Core/CellArray';
-import { cache, getEnabledElementByIds, Enums, getWebWorkerManager, eventTarget, triggerEvent, utilities, VolumeViewport3D, } from '@cornerstonejs/core';
+import { cache, getEnabledElementByIds, VolumeViewport3D, } from '@cornerstonejs/core';
 import * as SegmentationState from '../../../stateManagement/segmentation/segmentationState';
 import Representations from '../../../enums/SegmentationRepresentations';
 import { getToolGroup } from '../../../store/ToolGroupManager';
-import { registerDisplayToolsWorker } from '../registerDisplayToolsWorker';
 import removeSurfaceFromElement from './removeSurfaceFromElement';
 import addOrUpdateSurfaceToElement from './addOrUpdateSurfaceToElement';
 import { polySeg } from '../../../stateManagement/segmentation';
-import { pointToString } from '../../../utilities';
-import { WorkerTypes } from '../../../enums';
-const workerManager = getWebWorkerManager();
-const polyDataCache = new Map();
-const currentViewportNormal = new Map();
-const triggerWorkerProgress = (eventTarget, progress) => {
-    triggerEvent(eventTarget, Enums.Events.WEB_WORKER_PROGRESS, {
-        progress,
-        type: WorkerTypes.DISPLAY_TOOL_CLIP_SURFACE,
-    });
-};
 function removeSegmentationRepresentation(toolGroupId, segmentationRepresentationUID, renderImmediate = false) {
     _removeSurfaceFromToolGroupViewports(toolGroupId, segmentationRepresentationUID);
     SegmentationState.removeSegmentationRepresentation(toolGroupId, segmentationRepresentationUID);
@@ -30,12 +16,15 @@ function removeSegmentationRepresentation(toolGroupId, segmentationRepresentatio
         });
     }
 }
-async function render(viewport, representation, toolGroupConfig) {
-    const { colorLUTIndex, active, segmentationId, segmentationRepresentationUID, segmentsHidden, } = representation;
+async function render(viewport, representation) {
+    const { colorLUTIndex, segmentationId, segmentationRepresentationUID } = representation;
     const segmentation = SegmentationState.getSegmentation(segmentationId);
     if (!segmentation) {
         return;
     }
+    if (!(viewport instanceof VolumeViewport3D)) {
+        throw new Error('Surface rendering is only supported in 3D viewports, if you need to visualize the surface cuts in 2D viewports, you can use the Contour representation, see polySeg converters');
+    }
     let SurfaceData = segmentation.representationData[Representations.Surface];
     if (!SurfaceData &&
         polySeg.canComputeRequestedRepresentation(segmentationRepresentationUID)) {
@@ -54,13 +43,7 @@ async function render(viewport, representation, toolGroupConfig) {
     const surfaces = [];
     geometryIds.forEach((geometryId, segmentIndex) => {
         const geometry = cache.getGeometry(geometryId);
-        if (!geometry) {
-            throw new Error(`No Surfaces found for geometryId ${geometryId}`);
-        }
-        if (geometry.type !== Enums.GeometryType.SURFACE) {
-            throw new Error(`Geometry type ${geometry.type} not supported for rendering.`);
-        }
-        if (!geometry.data) {
+        if (!geometry?.data) {
             console.warn(`No Surfaces found for geometryId ${geometryId}. Skipping render.`);
             return;
         }
@@ -70,9 +53,6 @@ async function render(viewport, representation, toolGroupConfig) {
         addOrUpdateSurfaceToElement(viewport.element, surface, segmentationRepresentationUID);
         surfaces.push(surface);
     });
-    if (!(viewport instanceof VolumeViewport3D)) {
-        generateAndCacheClippedSurfaces(surfaces, viewport, segmentationRepresentationUID);
-    }
     viewport.render();
 }
 function _removeSurfaceFromToolGroupViewports(toolGroupId, segmentationRepresentationUID) {
@@ -87,120 +67,9 @@ function _removeSurfaceFromToolGroupViewports(toolGroupId, segmentationRepresent
         removeSurfaceFromElement(enabledElement.viewport.element, segmentationRepresentationUID);
     }
 }
-async function generateAndCacheClippedSurfaces(surfaces, viewport, segmentationRepresentationUID) {
-    registerDisplayToolsWorker();
-    const planesInfo = viewport.getSlicesClippingPlanes?.();
-    if (!planesInfo) {
-        return;
-    }
-    const currentSliceIndex = viewport.getSliceIndex();
-    planesInfo.sort((a, b) => {
-        const diffA = Math.abs(a.sliceIndex - currentSliceIndex);
-        const diffB = Math.abs(b.sliceIndex - currentSliceIndex);
-        return diffA - diffB;
-    });
-    const pointsAndPolys = surfaces.map((surface) => {
-        const id = surface.id;
-        const points = surface.getPoints();
-        const polys = surface.getPolys();
-        return { id, points, polys };
-    });
-    const camera = viewport.getCamera();
-    function cameraModifiedCallback(evt) {
-        const { camera } = evt.detail;
-        const { viewPlaneNormal } = camera;
-        const surface1 = surfaces[0];
-        if (utilities.isEqual(viewPlaneNormal, currentViewportNormal.get(surface1.id))) {
-            return;
-        }
-        currentViewportNormal.set(surface1.id, viewPlaneNormal);
-        workerManager.terminate('displayTools');
-        setTimeout(() => {
-            generateAndCacheClippedSurfaces(surfaces, viewport, segmentationRepresentationUID);
-        }, 0);
-        viewport.render();
-    }
-    viewport.element.removeEventListener(Enums.Events.CAMERA_MODIFIED, cameraModifiedCallback);
-    viewport.element.addEventListener(Enums.Events.CAMERA_MODIFIED, cameraModifiedCallback);
-    triggerWorkerProgress(eventTarget, 0);
-    await workerManager
-        .executeTask('displayTools', 'clipSurfaceWithPlanes', {
-        planesInfo,
-        pointsAndPolys,
-    }, {
-        callbacks: [
-            ({ progress }) => {
-                triggerWorkerProgress(eventTarget, progress);
-            },
-            ({ sliceIndex, polyDataResults }) => {
-                polyDataResults.forEach((polyDataResult, surfaceId) => {
-                    const actorUID = `${segmentationRepresentationUID}_${surfaceId}`;
-                    const cacheId = generateCacheId(viewport, camera.viewPlaneNormal, sliceIndex);
-                    updatePolyDataCache(actorUID, cacheId, polyDataResult);
-                });
-            },
-        ],
-    })
-        .catch((error) => {
-        console.error(error);
-    });
-    triggerWorkerProgress(eventTarget, 100);
-}
-export function getSurfaceActorUID(segmentationRepresentationUID, surfaceId) {
-    return `${segmentationRepresentationUID}_${surfaceId}`;
-}
-export function generateCacheId(viewport, viewPlaneNormal, sliceIndex) {
-    return `${viewport.id}-${pointToString(viewPlaneNormal)}-${sliceIndex}`;
-}
-export function getOrCreatePolyData(actorEntry, cacheId, vtkPlanes) {
-    let actorCache = polyDataCache.get(actorEntry.uid);
-    if (!actorCache) {
-        actorCache = new Map();
-        polyDataCache.set(actorEntry.uid, actorCache);
-    }
-    let polyData = actorCache.get(cacheId);
-    if (!polyData) {
-        const clippingFilter = actorEntry.clippingFilter;
-        clippingFilter.setClippingPlanes(vtkPlanes);
-        try {
-            clippingFilter.update();
-            polyData = clippingFilter.getOutputData();
-            actorCache.set(cacheId, polyData);
-        }
-        catch (e) {
-            console.error('Error clipping surface', e);
-        }
-    }
-    return polyData;
-}
-export function updatePolyDataCache(actorUID, cacheId, polyDataResult) {
-    const { points, lines } = polyDataResult;
-    const polyData = vtkPolyData.newInstance();
-    polyData.getPoints().setData(points, 3);
-    const linesArray = vtkCellArray.newInstance({
-        values: Int16Array.from(lines),
-    });
-    polyData.setLines(linesArray);
-    let actorCache = polyDataCache.get(actorUID);
-    if (!actorCache) {
-        actorCache = new Map();
-        polyDataCache.set(actorUID, actorCache);
-    }
-    actorCache.set(cacheId, polyData);
-}
-export function getSortedPlanesInfo(viewport) {
-    const planesInfo = viewport.getSlicesClippingPlanes?.();
-    const currentSliceIndex = viewport.getSliceIndex();
-    planesInfo.sort((a, b) => {
-        const diffA = Math.abs(a.sliceIndex - currentSliceIndex);
-        const diffB = Math.abs(b.sliceIndex - currentSliceIndex);
-        return diffA - diffB;
-    });
-    return planesInfo;
-}
 export default {
     render,
     removeSegmentationRepresentation,
 };
-export { render, removeSegmentationRepresentation, polyDataCache };
+export { render, removeSegmentationRepresentation };
 //# sourceMappingURL=surfaceDisplay.js.map

package/dist/esm/tools/displayTools/Surface/surfaceDisplay.js.map

@@ -1 +1 @@
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package/dist/esm/utilities/contourSegmentation/addContourSegmentationAnnotation.js

@@ -5,12 +5,15 @@ export function addContourSegmentationAnnotation(annotation) {
     }
     const { segmentationId, segmentIndex } = annotation.data.segmentation;
     const segmentation = getSegmentation(segmentationId);
+    if (!segmentation.representationData.CONTOUR) {
+        segmentation.representationData.CONTOUR = { annotationUIDsMap: new Map() };
+    }
     const { annotationUIDsMap } = segmentation.representationData.CONTOUR;
     let annotationsUIDsSet = annotationUIDsMap.get(segmentIndex);
     if (!annotationsUIDsSet) {
         annotationsUIDsSet = new Set();
         annotationUIDsMap.set(segmentIndex, annotationsUIDsSet);
     }
-    annotationsUIDsSet.add(annotation.annotationUID);
+    annotationUIDsMap.set(segmentIndex, annotationsUIDsSet.add(annotation.annotationUID));
 }
 //# sourceMappingURL=addContourSegmentationAnnotation.js.map

package/dist/esm/utilities/contourSegmentation/addContourSegmentationAnnotation.js.map

@@ -1 +1 @@
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package/dist/esm/utilities/contourSegmentation/removeContourSegmentationAnnotation.js

@@ -7,6 +7,9 @@ export function removeContourSegmentationAnnotation(annotation) {
     const segmentation = state.getSegmentation(segmentationId);
     const { annotationUIDsMap } = segmentation.representationData.CONTOUR;
     const annotationsUIDsSet = annotationUIDsMap.get(segmentIndex);
+    if (!annotationsUIDsSet) {
+        return;
+    }
     annotationsUIDsSet.delete(annotation.annotationUID);
     if (!annotationsUIDsSet.size) {
         annotationUIDsMap.delete(segmentIndex);

package/dist/esm/utilities/contourSegmentation/removeContourSegmentationAnnotation.js.map

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package/dist/esm/utilities/math/polyline/getAABB.js

@@ -1,15 +1,41 @@
-export default function getAABB(polyline) {
+export default function getAABB(polyline, options) {
+    let polylineToUse = polyline;
+    const numDimensions = options?.numDimensions || 2;
+    const is3D = numDimensions === 3;
+    if (!Array.isArray(polyline[0])) {
+        const currentPolyline = polyline;
+        const totalPoints = currentPolyline.length / numDimensions;
+        polylineToUse = new Array(currentPolyline.length / numDimensions);
+        for (let i = 0, len = totalPoints; i < len; i++) {
+            polylineToUse[i] = [
+                currentPolyline[i * numDimensions],
+                currentPolyline[i * numDimensions + 1],
+            ];
+            if (is3D) {
+                polylineToUse[i].push(currentPolyline[i * numDimensions + 2]);
+            }
+        }
+    }
     let minX = Infinity;
     let minY = Infinity;
     let maxX = -Infinity;
     let maxY = -Infinity;
-    for (let i = 0, len = polyline.length; i < len; i++) {
-        const [x, y] = polyline[i];
+    let minZ = Infinity;
+    let maxZ = -Infinity;
+    polylineToUse = polylineToUse;
+    for (let i = 0, len = polylineToUse.length; i < len; i++) {
+        const [x, y, z] = polylineToUse[i];
         minX = minX < x ? minX : x;
         minY = minY < y ? minY : y;
         maxX = maxX > x ? maxX : x;
         maxY = maxY > y ? maxY : y;
+        if (is3D) {
+            minZ = minZ < z ? minZ : z;
+            maxZ = maxZ > z ? maxZ : z;
+        }
     }
-    return { minX, maxX, minY, maxY };
+    return is3D
+        ? { minX, maxX, minY, maxY, minZ, maxZ }
+        : { minX, maxX, minY, maxY };
 }
 //# sourceMappingURL=getAABB.js.map

package/dist/esm/utilities/math/polyline/getAABB.js.map

@@ -1 +1 @@
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package/dist/esm/utilities/planar/index.js

@@ -2,11 +2,13 @@ import filterAnnotationsWithinSlice from './filterAnnotationsWithinSlice';
 import getWorldWidthAndHeightFromCorners from './getWorldWidthAndHeightFromCorners';
 import filterAnnotationsForDisplay from './filterAnnotationsForDisplay';
 import getPointInLineOfSightWithCriteria from './getPointInLineOfSightWithCriteria';
+import { isPlaneIntersectingAABB } from './isPlaneIntersectingAABB';
 export default {
     filterAnnotationsWithinSlice,
     getWorldWidthAndHeightFromCorners,
     filterAnnotationsForDisplay,
     getPointInLineOfSightWithCriteria,
+    isPlaneIntersectingAABB,
 };
-export { filterAnnotationsWithinSlice, getWorldWidthAndHeightFromCorners, filterAnnotationsForDisplay, getPointInLineOfSightWithCriteria, };
+export { filterAnnotationsWithinSlice, getWorldWidthAndHeightFromCorners, filterAnnotationsForDisplay, getPointInLineOfSightWithCriteria, isPlaneIntersectingAABB, };
 //# sourceMappingURL=index.js.map

package/dist/esm/utilities/planar/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/planar/index.ts"],"names":[],"mappings":"AAAA,OAAO,4BAA4B,MAAM,gCAAgC,CAAC;AAC1E,OAAO,iCAAiC,MAAM,qCAAqC,CAAC;AACpF,OAAO,2BAA2B,MAAM,+BAA+B,CAAC;AACxE,OAAO,iCAAiC,MAAM,qCAAqC,CAAC;AACpF,OAAO,EAAE,uBAAuB,EAAE,MAAM,2BAA2B,CAAC;AAEpE,eAAe;IACb,4BAA4B;IAC5B,iCAAiC;IACjC,2BAA2B;IAC3B,iCAAiC;IACjC,uBAAuB;CACxB,CAAC;AAEF,OAAO,EACL,4BAA4B,EAC5B,iCAAiC,EACjC,2BAA2B,EAC3B,iCAAiC,EACjC,uBAAuB,GACxB,CAAC"}

package/dist/esm/utilities/planar/isPlaneIntersectingAABB.js

@@ -0,0 +1,28 @@
+import { vec3 } from 'gl-matrix';
+export const isPlaneIntersectingAABB = (origin, normal, minX, minY, minZ, maxX, maxY, maxZ) => {
+    const vertices = [
+        vec3.fromValues(minX, minY, minZ),
+        vec3.fromValues(maxX, minY, minZ),
+        vec3.fromValues(minX, maxY, minZ),
+        vec3.fromValues(maxX, maxY, minZ),
+        vec3.fromValues(minX, minY, maxZ),
+        vec3.fromValues(maxX, minY, maxZ),
+        vec3.fromValues(minX, maxY, maxZ),
+        vec3.fromValues(maxX, maxY, maxZ),
+    ];
+    const normalVec = vec3.fromValues(normal[0], normal[1], normal[2]);
+    const originVec = vec3.fromValues(origin[0], origin[1], origin[2]);
+    const planeDistance = -vec3.dot(normalVec, originVec);
+    let initialSign = null;
+    for (const vertex of vertices) {
+        const distance = vec3.dot(normalVec, vertex) + planeDistance;
+        if (initialSign === null) {
+            initialSign = Math.sign(distance);
+        }
+        else if (Math.sign(distance) !== initialSign) {
+            return true;
+        }
+    }
+    return false;
+};
+//# sourceMappingURL=isPlaneIntersectingAABB.js.map

package/dist/esm/utilities/planar/isPlaneIntersectingAABB.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"isPlaneIntersectingAABB.js","sourceRoot":"","sources":["../../../../src/utilities/planar/isPlaneIntersectingAABB.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAejC,MAAM,CAAC,MAAM,uBAAuB,GAAG,CACrC,MAAM,EACN,MAAM,EACN,IAAI,EACJ,IAAI,EACJ,IAAI,EACJ,IAAI,EACJ,IAAI,EACJ,IAAI,EACJ,EAAE;IACF,MAAM,QAAQ,GAAG;QACf,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;QACjC,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;QACjC,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;QACjC,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;QACjC,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;QACjC,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;QACjC,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;QACjC,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;KAClC,CAAC;IAEF,MAAM,SAAS,GAAG,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;IACnE,MAAM,SAAS,GAAG,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;IAGnE,MAAM,aAAa,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,SAAS,CAAC,CAAC;IAGtD,IAAI,WAAW,GAAG,IAAI,CAAC;IACvB,KAAK,MAAM,MAAM,IAAI,QAAQ,EAAE;QAE7B,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,MAAM,CAAC,GAAG,aAAa,CAAC;QAC7D,IAAI,WAAW,KAAK,IAAI,EAAE;YACxB,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;SACnC;aAAM,IAAI,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,WAAW,EAAE;YAC9C,OAAO,IAAI,CAAC;SACb;KACF;IAED,OAAO,KAAK,CAAC;AACf,CAAC,CAAC"}

package/dist/esm/utilities/segmentation/getUniqueSegmentIndices.js

@@ -1,55 +1,103 @@
 import { cache } from '@cornerstonejs/core';
-import { SegmentationRepresentations } from '../../enums';
 import { getSegmentation } from '../../stateManagement/segmentation/segmentationState';
 import { isVolumeSegmentation } from '../../tools/segmentation/strategies/utils/stackVolumeCheck';
+import { SegmentationRepresentations } from '../../enums';
+const segmentIndicesCache = new Map();
+export const setSegmentationDirty = (segmentationId) => {
+    const cached = segmentIndicesCache.get(segmentationId);
+    if (cached) {
+        cached.isDirty = true;
+    }
+};
+export const setSegmentationClean = (segmentationId) => {
+    const cached = segmentIndicesCache.get(segmentationId);
+    if (cached) {
+        cached.isDirty = false;
+    }
+};
+function getCachedSegmentIndices(segmentationId) {
+    const cached = segmentIndicesCache.get(segmentationId);
+    if (cached && !cached.isDirty) {
+        return cached.indices;
+    }
+    return null;
+}
 function getUniqueSegmentIndices(segmentationId) {
+    const cachedResult = getCachedSegmentIndices(segmentationId);
+    if (cachedResult) {
+        return cachedResult;
+    }
     const segmentation = getSegmentation(segmentationId);
-    if (segmentation.type === SegmentationRepresentations.Labelmap) {
-        const labelmapData = segmentation.representationData[SegmentationRepresentations.Labelmap];
-        const keySet = new Set();
-        if (isVolumeSegmentation(labelmapData)) {
-            const volume = cache.getVolume(segmentationId);
-            const scalarData = volume.getScalarData();
-            for (let i = 0; i < scalarData.length; i++) {
-                const segmentIndex = scalarData[i];
-                if (segmentIndex !== 0) {
-                    keySet.add(segmentIndex);
-                }
-            }
-        }
-        else {
-            labelmapData.imageIdReferenceMap.forEach((segmentationImageId) => {
-                const image = cache.getImage(segmentationImageId);
-                const scalarData = image.getPixelData();
-                for (let i = 0; i < scalarData.length; i++) {
-                    const segmentIndex = scalarData[i];
-                    if (segmentIndex !== 0) {
-                        keySet.add(segmentIndex);
-                    }
-                }
-            });
-        }
-        return Array.from(keySet)
-            .map((it) => parseInt(it))
-            .sort();
-    }
-    else if (segmentation.type === SegmentationRepresentations.Contour) {
-        const annotationUIDsMap = segmentation.representationData.CONTOUR?.annotationUIDsMap;
-        const indices = new Set(annotationUIDsMap.keys());
-        const geometryIds = segmentation.representationData.CONTOUR?.geometryIds;
-        if (!geometryIds) {
-            throw new Error(`No geometryIds found for segmentationId ${segmentationId}`);
+    if (!segmentation) {
+        throw new Error(`No segmentation found for segmentationId ${segmentationId}`);
+    }
+    let indices;
+    switch (segmentation.type) {
+        case SegmentationRepresentations.Labelmap:
+            indices = handleLabelmapSegmentation(segmentation, segmentationId);
+            break;
+        case SegmentationRepresentations.Contour:
+            indices = handleContourSegmentation(segmentation);
+            break;
+        case SegmentationRepresentations.Surface:
+            indices = handleSurfaceSegmentation(segmentation);
+            break;
+        default:
+            throw new Error(`Unsupported segmentation type: ${segmentation.type}`);
+    }
+    segmentIndicesCache.set(segmentationId, { indices, isDirty: false });
+    return indices;
+}
+function handleLabelmapSegmentation(segmentation, segmentationId) {
+    const labelmapData = segmentation.representationData[SegmentationRepresentations.Labelmap];
+    const keySet = new Set();
+    if (isVolumeSegmentation(labelmapData)) {
+        addVolumeSegmentIndices(keySet, segmentationId);
+    }
+    else {
+        addImageSegmentIndices(keySet, labelmapData.imageIdReferenceMap);
+    }
+    return Array.from(keySet)
+        .map(Number)
+        .sort((a, b) => a - b);
+}
+function addVolumeSegmentIndices(keySet, segmentationId) {
+    const volume = cache.getVolume(segmentationId);
+    const scalarData = volume.getScalarData();
+    scalarData.forEach((segmentIndex) => {
+        if (segmentIndex !== 0) {
+            keySet.add(segmentIndex);
         }
-        geometryIds.forEach((geometryId) => {
-            const geometry = cache.getGeometry(geometryId);
-            indices.add(geometry.data.getSegmentIndex());
+    });
+}
+function addImageSegmentIndices(keySet, imageIdReferenceMap) {
+    imageIdReferenceMap.forEach((segmentationImageId) => {
+        const image = cache.getImage(segmentationImageId);
+        const scalarData = image.getPixelData();
+        scalarData.forEach((segmentIndex) => {
+            if (segmentIndex !== 0) {
+                keySet.add(segmentIndex);
+            }
         });
-        return Array.from(indices.values()).sort();
-    }
-    else if (segmentation.type === SegmentationRepresentations.Surface) {
-        const geometryIds = segmentation.representationData.SURFACE?.geometryIds ?? [];
-        return Array.from(geometryIds.keys());
+    });
+}
+function handleContourSegmentation(segmentation) {
+    const { annotationUIDsMap, geometryIds } = segmentation.representationData.CONTOUR || {};
+    if (!geometryIds) {
+        throw new Error(`No geometryIds found for segmentationId ${segmentation.segmentationId}`);
     }
+    const indices = new Set([...annotationUIDsMap.keys()]);
+    geometryIds.forEach((geometryId) => {
+        const geometry = cache.getGeometry(geometryId);
+        indices.add(geometry.data.getSegmentIndex());
+    });
+    return Array.from(indices).sort((a, b) => a - b);
+}
+function handleSurfaceSegmentation(segmentation) {
+    const geometryIds = segmentation.representationData.SURFACE?.geometryIds ?? [];
+    return Array.from(geometryIds.keys())
+        .map(Number)
+        .sort((a, b) => a - b);
 }
 export { getUniqueSegmentIndices };
 //# sourceMappingURL=getUniqueSegmentIndices.js.map

package/dist/esm/utilities/segmentation/getUniqueSegmentIndices.js.map

@@ -1 +1 @@
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+{"version":3,"file":"getUniqueSegmentIndices.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/getUniqueSegmentIndices.ts"],"names":[],"mappings":"AAAA,OAAO,EAAS,KAAK,EAAE,MAAM,qBAAqB,CAAC;AACnD,OAAO,EAAE,eAAe,EAAE,MAAM,sDAAsD,CAAC;AACvF,OAAO,EAAE,oBAAoB,EAAE,MAAM,4DAA4D,CAAC;AAClG,OAAO,EAAE,2BAA2B,EAAE,MAAM,aAAa,CAAC;AAE1D,MAAM,mBAAmB,GAAG,IAAI,GAAG,EAGhC,CAAC;AAMJ,MAAM,CAAC,MAAM,oBAAoB,GAAG,CAAC,cAAsB,EAAE,EAAE;IAC7D,MAAM,MAAM,GAAG,mBAAmB,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;IACvD,IAAI,MAAM,EAAE;QACV,MAAM,CAAC,OAAO,GAAG,IAAI,CAAC;KACvB;AACH,CAAC,CAAC;AAEF,MAAM,CAAC,MAAM,oBAAoB,GAAG,CAAC,cAAsB,EAAE,EAAE;IAC7D,MAAM,MAAM,GAAG,mBAAmB,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;IACvD,IAAI,MAAM,EAAE;QACV,MAAM,CAAC,OAAO,GAAG,KAAK,CAAC;KACxB;AACH,CAAC,CAAC;AAEF,SAAS,uBAAuB,CAAC,cAAc;IAC7C,MAAM,MAAM,GAAG,mBAAmB,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;IACvD,IAAI,MAAM,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE;QAC7B,OAAO,MAAM,CAAC,OAAO,CAAC;KACvB;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AASD,SAAS,uBAAuB,CAAC,cAAc;IAE7C,MAAM,YAAY,GAAG,uBAAuB,CAAC,cAAc,CAAC,CAAC;IAC7D,IAAI,YAAY,EAAE;QAChB,OAAO,YAAY,CAAC;KACrB;IAED,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IACrD,IAAI,CAAC,YAAY,EAAE;QACjB,MAAM,IAAI,KAAK,CACb,4CAA4C,cAAc,EAAE,CAC7D,CAAC;KACH;IAED,IAAI,OAAO,CAAC;IACZ,QAAQ,YAAY,CAAC,IAAI,EAAE;QACzB,KAAK,2BAA2B,CAAC,QAAQ;YACvC,OAAO,GAAG,0BAA0B,CAAC,YAAY,EAAE,cAAc,CAAC,CAAC;YACnE,MAAM;QACR,KAAK,2BAA2B,CAAC,OAAO;YACtC,OAAO,GAAG,yBAAyB,CAAC,YAAY,CAAC,CAAC;YAClD,MAAM;QACR,KAAK,2BAA2B,CAAC,OAAO;YACtC,OAAO,GAAG,yBAAyB,CAAC,YAAY,CAAC,CAAC;YAClD,MAAM;QACR;YACE,MAAM,IAAI,KAAK,CAAC,kCAAkC,YAAY,CAAC,IAAI,EAAE,CAAC,CAAC;KAC1E;IAGD,mBAAmB,CAAC,GAAG,CAAC,cAAc,EAAE,EAAE,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC,CAAC;IACrE,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,SAAS,0BAA0B,CAAC,YAAY,EAAE,cAAc;IAC9D,MAAM,YAAY,GAChB,YAAY,CAAC,kBAAkB,CAAC,2BAA2B,CAAC,QAAQ,CAAC,CAAC;IACxE,MAAM,MAAM,GAAG,IAAI,GAAG,EAAE,CAAC;IAEzB,IAAI,oBAAoB,CAAC,YAAY,CAAC,EAAE;QACtC,uBAAuB,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC;KACjD;SAAM;QACL,sBAAsB,CAAC,MAAM,EAAE,YAAY,CAAC,mBAAmB,CAAC,CAAC;KAClE;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC;SACtB,GAAG,CAAC,MAAM,CAAC;SACX,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;AAC3B,CAAC;AAED,SAAS,uBAAuB,CAAC,MAAM,EAAE,cAAc;IACrD,MAAM,MAAM,GAAG,KAAK,CAAC,SAAS,CAAC,cAAc,CAAC,CAAC;IAC/C,MAAM,UAAU,GAAG,MAAM,CAAC,aAAa,EAAE,CAAC;IAC1C,UAAU,CAAC,OAAO,CAAC,CAAC,YAAY,EAAE,EAAE;QAClC,IAAI,YAAY,KAAK,CAAC,EAAE;YACtB,MAAM,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;SAC1B;IACH,CAAC,CAAC,CAAC;AACL,CAAC;AAED,SAAS,sBAAsB,CAAC,MAAM,EAAE,mBAAmB;IACzD,mBAAmB,CAAC,OAAO,CAAC,CAAC,mBAAmB,EAAE,EAAE;QAClD,MAAM,KAAK,GAAG,KAAK,CAAC,QAAQ,CAAC,mBAAmB,CAAC,CAAC;QAClD,MAAM,UAAU,GAAG,KAAK,CAAC,YAAY,EAAE,CAAC;QACxC,UAAU,CAAC,OAAO,CAAC,CAAC,YAAY,EAAE,EAAE;YAClC,IAAI,YAAY,KAAK,CAAC,EAAE;gBACtB,MAAM,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;aAC1B;QACH,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;AACL,CAAC;AAED,SAAS,yBAAyB,CAAC,YAAY;IAC7C,MAAM,EAAE,iBAAiB,EAAE,WAAW,EAAE,GACtC,YAAY,CAAC,kBAAkB,CAAC,OAAO,IAAI,EAAE,CAAC;IAChD,IAAI,CAAC,WAAW,EAAE;QAChB,MAAM,IAAI,KAAK,CACb,2CAA2C,YAAY,CAAC,cAAc,EAAE,CACzE,CAAC;KACH;IAED,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,iBAAiB,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;IACvD,WAAW,CAAC,OAAO,CAAC,CAAC,UAAU,EAAE,EAAE;QACjC,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAC;QAC/C,OAAO,CAAC,GAAG,CAAE,QAAQ,CAAC,IAA0B,CAAC,eAAe,EAAE,CAAC,CAAC;IACtE,CAAC,CAAC,CAAC;IAEH,OAAO,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;AACnD,CAAC;AAED,SAAS,yBAAyB,CAAC,YAAY;IAC7C,MAAM,WAAW,GACf,YAAY,CAAC,kBAAkB,CAAC,OAAO,EAAE,WAAW,IAAI,EAAE,CAAC;IAC7D,OAAO,KAAK,CAAC,IAAI,CAAC,WAAW,CAAC,IAAI,EAAE,CAAC;SAClC,GAAG,CAAC,MAAM,CAAC;SACX,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;AAC3B,CAAC;AAED,OAAO,EAAE,uBAAuB,EAAE,CAAC"}

package/dist/esm/workers/polySegConverters.js

@@ -3,9 +3,14 @@ import vtkImageData from '@kitware/vtk.js/Common/DataModel/ImageData';
 import vtkDataArray from '@kitware/vtk.js/Common/Core/DataArray';
 import ICRPolySeg from '@icr/polyseg-wasm';
 import { utilities } from '@cornerstonejs/core';
+import vtkPlane from '@kitware/vtk.js/Common/DataModel/Plane';
+import vtkPolyData from '@kitware/vtk.js/Common/DataModel/PolyData';
+import vtkContourLoopExtraction from '@kitware/vtk.js/Filters/General/ContourLoopExtraction';
+import vtkCutter from '@kitware/vtk.js/Filters/Core/Cutter';
 import { getBoundingBoxAroundShapeWorld } from '../utilities/boundingBox';
 import { pointInShapeCallback } from '../utilities';
-import { isPointInsidePolyline3D } from '../utilities/math/polyline';
+import { getAABB, isPointInsidePolyline3D } from '../utilities/math/polyline';
+import { isPlaneIntersectingAABB } from '../utilities/planar';
 const polySegConverters = {
     polySeg: null,
     polySegInitializing: false,
@@ -236,6 +241,74 @@ const polySegConverters = {
         });
         return segmentationVoxelManager.scalarData;
     },
+    getSurfacesAABBs({ surfacesInfo }) {
+        const aabbs = new Map();
+        for (const { points, id } of surfacesInfo) {
+            const aabb = getAABB(points, { numDimensions: 3 });
+            aabbs.set(id, aabb);
+        }
+        return aabbs;
+    },
+    cutSurfacesIntoPlanes({ planesInfo, surfacesInfo, surfacesAABB = new Map() }, progressCallback, updateCacheCallback) {
+        const numberOfPlanes = planesInfo.length;
+        const cutter = vtkCutter.newInstance();
+        const plane1 = vtkPlane.newInstance();
+        cutter.setCutFunction(plane1);
+        const surfacePolyData = vtkPolyData.newInstance();
+        try {
+            for (const [index, planeInfo] of planesInfo.entries()) {
+                const { sliceIndex, planes } = planeInfo;
+                const polyDataResults = new Map();
+                for (const polyDataInfo of surfacesInfo) {
+                    const { points, polys, id } = polyDataInfo;
+                    const aabb3 = surfacesAABB.get(id) || getAABB(points, { numDimensions: 3 });
+                    if (!surfacesAABB.has(id)) {
+                        surfacesAABB.set(id, aabb3);
+                    }
+                    const { minX, minY, minZ, maxX, maxY, maxZ } = aabb3;
+                    const { origin, normal } = planes[0];
+                    if (!isPlaneIntersectingAABB(origin, normal, minX, minY, minZ, maxX, maxY, maxZ)) {
+                        continue;
+                    }
+                    surfacePolyData.getPoints().setData(points, 3);
+                    surfacePolyData.getPolys().setData(polys, 3);
+                    surfacePolyData.modified();
+                    cutter.setInputData(surfacePolyData);
+                    plane1.setOrigin(origin);
+                    plane1.setNormal(normal);
+                    try {
+                        cutter.update();
+                    }
+                    catch (e) {
+                        console.warn('Error during clipping', e);
+                        continue;
+                    }
+                    const polyData = cutter.getOutputData();
+                    const cutterOutput = polyData;
+                    cutterOutput.buildLinks();
+                    const loopExtraction = vtkContourLoopExtraction.newInstance();
+                    loopExtraction.setInputData(cutterOutput);
+                    const loopOutput = loopExtraction.getOutputData();
+                    if (polyData) {
+                        polyDataResults.set(id, {
+                            points: loopOutput.getPoints().getData(),
+                            lines: loopOutput.getLines().getData(),
+                            numberOfCells: loopOutput.getLines().getNumberOfCells(),
+                        });
+                    }
+                }
+                progressCallback({ progress: (index + 1) / numberOfPlanes });
+                updateCacheCallback({ sliceIndex, polyDataResults });
+            }
+        }
+        catch (e) {
+            console.warn('Error during processing', e);
+        }
+        finally {
+            surfacesInfo = null;
+            plane1.delete();
+        }
+    },
 };
 expose(polySegConverters);
 //# sourceMappingURL=polySegConverters.js.map