@cornerstonejs/tools 1.5.0 → 1.7.0

package/dist/esm/tools/annotation/RectangleROITool.js

@@ -1,5 +1,7 @@
 import { AnnotationTool } from '../base';
 import { getEnabledElement, VolumeViewport, triggerEvent, eventTarget, utilities as csUtils, } from '@cornerstonejs/core';
+import { getCalibratedAreaUnits, getCalibratedScale, } from '../../utilities/getCalibratedUnits';
+import roundNumber from '../../utilities/roundNumber';
 import throttle from '../../utilities/throttle';
 import { addAnnotation, getAnnotations, removeAnnotation, } from '../../stateManagement';
 import { isAnnotationLocked } from '../../stateManagement/annotation/annotationLocking';
@@ -449,10 +451,10 @@ class RectangleROITool extends AnnotationTool {
                 return;
             }
             const textLines = [];
-            textLines.push(`Area: ${area.toFixed(2)} ${areaUnit}\xb2`);
-            textLines.push(`Mean: ${mean.toFixed(2)} ${modalityUnit}`);
-            textLines.push(`Max: ${max.toFixed(2)} ${modalityUnit}`);
-            textLines.push(`Std Dev: ${stdDev.toFixed(2)} ${modalityUnit}`);
+            textLines.push(`Area: ${roundNumber(area)} ${areaUnit}`);
+            textLines.push(`Mean: ${roundNumber(mean)} ${modalityUnit}`);
+            textLines.push(`Max: ${roundNumber(max)} ${modalityUnit}`);
+            textLines.push(`Std Dev: ${roundNumber(stdDev)} ${modalityUnit}`);
             return textLines;
         };
         this._calculateCachedStats = (annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement, modalityUnitOptions) => {
@@ -468,7 +470,7 @@ class RectangleROITool extends AnnotationTool {
                 if (!image) {
                     continue;
                 }
-                const { dimensions, imageData, metadata, hasPixelSpacing } = image;
+                const { dimensions, imageData, metadata } = image;
                 const scalarData = 'getScalarData' in image ? image.getScalarData() : image.scalarData;
                 const worldPos1Index = transformWorldToIndex(imageData, worldPos1);
                 worldPos1Index[0] = Math.floor(worldPos1Index[0]);
@@ -487,7 +489,8 @@ class RectangleROITool extends AnnotationTool {
                     const kMin = Math.min(worldPos1Index[2], worldPos2Index[2]);
                     const kMax = Math.max(worldPos1Index[2], worldPos2Index[2]);
                     const { worldWidth, worldHeight } = getWorldWidthAndHeightFromCorners(viewPlaneNormal, viewUp, worldPos1, worldPos2);
-                    const area = Math.abs(worldWidth * worldHeight);
+                    const scale = getCalibratedScale(image);
+                    const area = Math.abs(worldWidth * worldHeight) / (scale * scale);
                     let count = 0;
                     let mean = 0;
                     let stdDev = 0;
@@ -525,7 +528,7 @@ class RectangleROITool extends AnnotationTool {
                         mean,
                         stdDev,
                         max,
-                        areaUnit: hasPixelSpacing ? 'mm' : 'px',
+                        areaUnit: getCalibratedAreaUnits(null, image),
                         modalityUnit,
                     };
                 }

package/dist/esm/tools/annotation/RectangleROITool.js.map

@@ -1 +1 @@
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package/dist/esm/tools/base/AnnotationDisplayTool.js

@@ -1,5 +1,4 @@
-import { utilities, getEnabledElement, VolumeViewport, StackViewport, cache, } from '@cornerstonejs/core';
-import { vec4 } from 'gl-matrix';
+import { utilities, getEnabledElement, StackViewport, cache, } from '@cornerstonejs/core';
 import BaseTool from './BaseTool';
 import { getAnnotationManager } from '../../stateManagement/annotation/annotationState';
 import triggerAnnotationRender from '../../utilities/triggerAnnotationRender';
@@ -10,17 +9,12 @@ class AnnotationDisplayTool extends BaseTool {
     constructor() {
         super(...arguments);
         this.onImageSpacingCalibrated = (evt) => {
-            const { element, rowScale, columnScale, imageId, imageData: calibratedImageData, worldToIndex: nonCalibratedWorldToIndex, } = evt.detail;
-            const { viewport } = getEnabledElement(element);
-            if (viewport instanceof VolumeViewport) {
-                throw new Error('Cannot calibrate a volume viewport');
-            }
-            const calibratedIndexToWorld = calibratedImageData.getIndexToWorld();
+            const { element, imageId } = evt.detail;
             const imageURI = utilities.imageIdToURI(imageId);
-            const stateManager = getAnnotationManager();
-            const framesOfReference = stateManager.getFramesOfReference();
+            const annotationManager = getAnnotationManager();
+            const framesOfReference = annotationManager.getFramesOfReference();
             framesOfReference.forEach((frameOfReference) => {
-                const frameOfReferenceSpecificAnnotations = stateManager.getAnnotations(frameOfReference);
+                const frameOfReferenceSpecificAnnotations = annotationManager.getAnnotations(frameOfReference);
                 const toolSpecificAnnotations = frameOfReferenceSpecificAnnotations[this.getToolName()];
                 if (!toolSpecificAnnotations || !toolSpecificAnnotations.length) {
                     return;
@@ -30,19 +24,6 @@ class AnnotationDisplayTool extends BaseTool {
                     if (referencedImageURI === imageURI) {
                         annotation.invalidated = true;
                         annotation.data.cachedStats = {};
-                        annotation.data.handles.points = annotation.data.handles.points.map((point) => {
-                            const p = vec4.fromValues(...point, 1);
-                            const pCalibrated = vec4.fromValues(0, 0, 0, 1);
-                            const nonCalibratedIndexVec4 = vec4.create();
-                            vec4.transformMat4(nonCalibratedIndexVec4, p, nonCalibratedWorldToIndex);
-                            const calibratedIndex = [
-                                columnScale * nonCalibratedIndexVec4[0],
-                                rowScale * nonCalibratedIndexVec4[1],
-                                nonCalibratedIndexVec4[2],
-                            ];
-                            vec4.transformMat4(pCalibrated, vec4.fromValues(calibratedIndex[0], calibratedIndex[1], calibratedIndex[2], 1), calibratedIndexToWorld);
-                            return pCalibrated.slice(0, 3);
-                        });
                     }
                 });
                 triggerAnnotationRender(element);

package/dist/esm/tools/base/AnnotationDisplayTool.js.map

@@ -1 +1 @@
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package/dist/esm/utilities/calibrateImageSpacing.d.ts

@@ -1,2 +1,2 @@
 import type { Types } from '@cornerstonejs/core';
-export default function calibrateImageSpacing(imageId: string, renderingEngine: Types.IRenderingEngine, rowPixelSpacing: number, columnPixelSpacing: number): void;
+export default function calibrateImageSpacing(imageId: string, renderingEngine: Types.IRenderingEngine, calibrationOrScale: Types.IImageCalibration | number): void;

package/dist/esm/utilities/calibrateImageSpacing.js

@@ -1,13 +1,13 @@
-import { utilities } from '@cornerstonejs/core';
+import { utilities, Enums } from '@cornerstonejs/core';
 const { calibratedPixelSpacingMetadataProvider } = utilities;
-export default function calibrateImageSpacing(imageId, renderingEngine, rowPixelSpacing, columnPixelSpacing) {
-    if (!columnPixelSpacing) {
-        columnPixelSpacing = rowPixelSpacing;
+export default function calibrateImageSpacing(imageId, renderingEngine, calibrationOrScale) {
+    if (typeof calibrationOrScale === 'number') {
+        calibrationOrScale = {
+            type: Enums.CalibrationTypes.USER,
+            scale: calibrationOrScale,
+        };
     }
-    calibratedPixelSpacingMetadataProvider.add(imageId, {
-        rowPixelSpacing,
-        columnPixelSpacing,
-    });
+    calibratedPixelSpacingMetadataProvider.add(imageId, calibrationOrScale);
     const viewports = renderingEngine.getStackViewports();
     viewports.forEach((viewport) => {
         const imageIds = viewport.getImageIds();

package/dist/esm/utilities/calibrateImageSpacing.js.map

@@ -1 +1 @@
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+{"version":3,"file":"calibrateImageSpacing.js","sourceRoot":"","sources":["../../../src/utilities/calibrateImageSpacing.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,KAAK,EAAE,MAAM,qBAAqB,CAAC;AAGvD,MAAM,EAAE,sCAAsC,EAAE,GAAG,SAAS,CAAC;AAU7D,MAAM,CAAC,OAAO,UAAU,qBAAqB,CAC3C,OAAe,EACf,eAAuC,EACvC,kBAAoD;IAGpD,IAAI,OAAO,kBAAkB,KAAK,QAAQ,EAAE;QAC1C,kBAAkB,GAAG;YACnB,IAAI,EAAE,KAAK,CAAC,gBAAgB,CAAC,IAAI;YACjC,KAAK,EAAE,kBAAkB;SAC1B,CAAC;KACH;IAED,sCAAsC,CAAC,GAAG,CAAC,OAAO,EAAE,kBAAkB,CAAC,CAAC;IAGxE,MAAM,SAAS,GAAG,eAAe,CAAC,iBAAiB,EAAE,CAAC;IAGtD,SAAS,CAAC,OAAO,CAAC,CAAC,QAAQ,EAAE,EAAE;QAC7B,MAAM,QAAQ,GAAG,QAAQ,CAAC,WAAW,EAAE,CAAC;QACxC,IAAI,QAAQ,CAAC,QAAQ,CAAC,OAAO,CAAC,EAAE;YAC9B,QAAQ,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAC;SACpC;IACH,CAAC,CAAC,CAAC;AAKL,CAAC"}

package/dist/esm/utilities/getCalibratedUnits.d.ts

@@ -0,0 +1,6 @@
+declare const getCalibratedLengthUnits: (handles: any, image: any) => string;
+declare const getCalibratedAreaUnits: (handles: any, image: any) => string;
+declare const getCalibratedScale: (image: any) => any;
+declare const getCalibratedAspect: (image: any) => any;
+export default getCalibratedLengthUnits;
+export { getCalibratedAreaUnits, getCalibratedLengthUnits, getCalibratedScale, getCalibratedAspect, };

package/dist/esm/utilities/getCalibratedUnits.js

@@ -0,0 +1,29 @@
+import { Enums } from '@cornerstonejs/core';
+const { CalibrationTypes } = Enums;
+const PIXEL_UNITS = 'px';
+const getCalibratedLengthUnits = (handles, image) => {
+    const { calibration, hasPixelSpacing } = image;
+    const units = hasPixelSpacing ? 'mm' : PIXEL_UNITS;
+    if (!calibration || !calibration.type)
+        return units;
+    if (calibration.type === CalibrationTypes.UNCALIBRATED)
+        return PIXEL_UNITS;
+    if (calibration.SequenceOfUltrasoundRegions)
+        return 'US Region';
+    return `${units} ${calibration.type}`;
+};
+const SQUARE = '\xb2';
+const getCalibratedAreaUnits = (handles, image) => {
+    const { calibration, hasPixelSpacing } = image;
+    const units = (hasPixelSpacing ? 'mm' : PIXEL_UNITS) + SQUARE;
+    if (!calibration || !calibration.type)
+        return units;
+    if (calibration.SequenceOfUltrasoundRegions)
+        return 'US Region';
+    return `${units} ${calibration.type}`;
+};
+const getCalibratedScale = (image) => image.calibration?.scale || 1;
+const getCalibratedAspect = (image) => image.calibration?.aspect || 1;
+export default getCalibratedLengthUnits;
+export { getCalibratedAreaUnits, getCalibratedLengthUnits, getCalibratedScale, getCalibratedAspect, };
+//# sourceMappingURL=getCalibratedUnits.js.map

package/dist/esm/utilities/getCalibratedUnits.js.map

@@ -0,0 +1 @@
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package/dist/esm/utilities/index.d.ts

@@ -10,6 +10,7 @@ import jumpToSlice from './viewport/jumpToSlice';
 import pointInShapeCallback from './pointInShapeCallback';
 import pointInSurroundingSphereCallback from './pointInSurroundingSphereCallback';
 import scroll from './scroll';
+import roundNumber from './roundNumber';
 import * as segmentation from './segmentation';
 import * as drawing from './drawing';
 import * as math from './math';
@@ -25,4 +26,4 @@ import * as viewport from './viewport';
 import * as touch from './touch';
 import * as dynamicVolume from './dynamicVolume';
 import { triggerEvent } from '@cornerstonejs/core';
-export { math, planar, viewportFilters, drawing, debounce, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, };
+export { math, planar, viewportFilters, drawing, debounce, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, roundNumber, };

package/dist/esm/utilities/index.js

@@ -10,6 +10,7 @@ import jumpToSlice from './viewport/jumpToSlice';
 import pointInShapeCallback from './pointInShapeCallback';
 import pointInSurroundingSphereCallback from './pointInSurroundingSphereCallback';
 import scroll from './scroll';
+import roundNumber from './roundNumber';
 import * as segmentation from './segmentation';
 import * as drawing from './drawing';
 import * as math from './math';
@@ -25,5 +26,5 @@ import * as viewport from './viewport';
 import * as touch from './touch';
 import * as dynamicVolume from './dynamicVolume';
 import { triggerEvent } from '@cornerstonejs/core';
-export { math, planar, viewportFilters, drawing, debounce, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, };
+export { math, planar, viewportFilters, drawing, debounce, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, scroll, roundNumber, };
 //# sourceMappingURL=index.js.map

package/dist/esm/utilities/index.js.map

@@ -1 +1 @@
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package/dist/esm/utilities/roundNumber.d.ts

@@ -0,0 +1,2 @@
+declare function roundNumber(value: string | number, precision?: number): string;
+export default roundNumber;

package/dist/esm/utilities/roundNumber.js

@@ -0,0 +1,23 @@
+function roundNumber(value, precision = 2) {
+    if (value === undefined || value === null || value === '')
+        return 'NaN';
+    value = Number(value);
+    if (value < 0.0001)
+        return `${value}`;
+    const fixedPrecision = value >= 100
+        ? precision - 2
+        : value >= 10
+            ? precision - 1
+            : value >= 1
+                ? precision
+                : value >= 0.1
+                    ? precision + 1
+                    : value >= 0.01
+                        ? precision + 2
+                        : value >= 0.001
+                            ? precision + 3
+                            : precision + 4;
+    return value.toFixed(fixedPrecision);
+}
+export default roundNumber;
+//# sourceMappingURL=roundNumber.js.map

package/dist/esm/utilities/roundNumber.js.map

@@ -0,0 +1 @@
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