@cornerstonejs/tools 1.5.0 → 1.7.0

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Files changed (71) hide show
  1. package/dist/cjs/tools/annotation/AngleTool.js +9 -4
  2. package/dist/cjs/tools/annotation/AngleTool.js.map +1 -1
  3. package/dist/cjs/tools/annotation/BidirectionalTool.js +9 -6
  4. package/dist/cjs/tools/annotation/BidirectionalTool.js.map +1 -1
  5. package/dist/cjs/tools/annotation/CircleROITool.js +16 -10
  6. package/dist/cjs/tools/annotation/CircleROITool.js.map +1 -1
  7. package/dist/cjs/tools/annotation/EllipticalROITool.js +11 -6
  8. package/dist/cjs/tools/annotation/EllipticalROITool.js.map +1 -1
  9. package/dist/cjs/tools/annotation/LengthTool.js +7 -4
  10. package/dist/cjs/tools/annotation/LengthTool.js.map +1 -1
  11. package/dist/cjs/tools/annotation/PlanarFreehandROITool.js +10 -7
  12. package/dist/cjs/tools/annotation/PlanarFreehandROITool.js.map +1 -1
  13. package/dist/cjs/tools/annotation/RectangleROITool.js +10 -7
  14. package/dist/cjs/tools/annotation/RectangleROITool.js.map +1 -1
  15. package/dist/cjs/tools/base/AnnotationDisplayTool.js +4 -23
  16. package/dist/cjs/tools/base/AnnotationDisplayTool.js.map +1 -1
  17. package/dist/cjs/utilities/calibrateImageSpacing.d.ts +1 -1
  18. package/dist/cjs/utilities/calibrateImageSpacing.js +7 -7
  19. package/dist/cjs/utilities/calibrateImageSpacing.js.map +1 -1
  20. package/dist/cjs/utilities/getCalibratedUnits.d.ts +6 -0
  21. package/dist/cjs/utilities/getCalibratedUnits.js +35 -0
  22. package/dist/cjs/utilities/getCalibratedUnits.js.map +1 -0
  23. package/dist/cjs/utilities/index.d.ts +2 -1
  24. package/dist/cjs/utilities/index.js +3 -1
  25. package/dist/cjs/utilities/index.js.map +1 -1
  26. package/dist/cjs/utilities/roundNumber.d.ts +2 -0
  27. package/dist/cjs/utilities/roundNumber.js +25 -0
  28. package/dist/cjs/utilities/roundNumber.js.map +1 -0
  29. package/dist/esm/tools/annotation/AngleTool.js +9 -4
  30. package/dist/esm/tools/annotation/AngleTool.js.map +1 -1
  31. package/dist/esm/tools/annotation/BidirectionalTool.js +9 -6
  32. package/dist/esm/tools/annotation/BidirectionalTool.js.map +1 -1
  33. package/dist/esm/tools/annotation/CircleROITool.js +16 -10
  34. package/dist/esm/tools/annotation/CircleROITool.js.map +1 -1
  35. package/dist/esm/tools/annotation/EllipticalROITool.js +11 -6
  36. package/dist/esm/tools/annotation/EllipticalROITool.js.map +1 -1
  37. package/dist/esm/tools/annotation/LengthTool.js +7 -4
  38. package/dist/esm/tools/annotation/LengthTool.js.map +1 -1
  39. package/dist/esm/tools/annotation/PlanarFreehandROITool.js +10 -7
  40. package/dist/esm/tools/annotation/PlanarFreehandROITool.js.map +1 -1
  41. package/dist/esm/tools/annotation/RectangleROITool.js +10 -7
  42. package/dist/esm/tools/annotation/RectangleROITool.js.map +1 -1
  43. package/dist/esm/tools/base/AnnotationDisplayTool.js +5 -24
  44. package/dist/esm/tools/base/AnnotationDisplayTool.js.map +1 -1
  45. package/dist/esm/utilities/calibrateImageSpacing.d.ts +1 -1
  46. package/dist/esm/utilities/calibrateImageSpacing.js +8 -8
  47. package/dist/esm/utilities/calibrateImageSpacing.js.map +1 -1
  48. package/dist/esm/utilities/getCalibratedUnits.d.ts +6 -0
  49. package/dist/esm/utilities/getCalibratedUnits.js +29 -0
  50. package/dist/esm/utilities/getCalibratedUnits.js.map +1 -0
  51. package/dist/esm/utilities/index.d.ts +2 -1
  52. package/dist/esm/utilities/index.js +2 -1
  53. package/dist/esm/utilities/index.js.map +1 -1
  54. package/dist/esm/utilities/roundNumber.d.ts +2 -0
  55. package/dist/esm/utilities/roundNumber.js +23 -0
  56. package/dist/esm/utilities/roundNumber.js.map +1 -0
  57. package/dist/umd/index.js +1 -1
  58. package/dist/umd/index.js.map +1 -1
  59. package/package.json +3 -3
  60. package/src/tools/annotation/AngleTool.ts +14 -9
  61. package/src/tools/annotation/BidirectionalTool.ts +13 -8
  62. package/src/tools/annotation/CircleROITool.ts +23 -10
  63. package/src/tools/annotation/EllipticalROITool.ts +15 -6
  64. package/src/tools/annotation/LengthTool.ts +10 -5
  65. package/src/tools/annotation/PlanarFreehandROITool.ts +15 -7
  66. package/src/tools/annotation/RectangleROITool.ts +13 -7
  67. package/src/tools/base/AnnotationDisplayTool.ts +5 -57
  68. package/src/utilities/calibrateImageSpacing.ts +11 -14
  69. package/src/utilities/getCalibratedUnits.ts +66 -0
  70. package/src/utilities/index.ts +2 -0
  71. package/src/utilities/roundNumber.ts +34 -0
package/dist/cjs/tools/annotation/EllipticalROITool.js.map CHANGED
@@ -1 +1 @@
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package/dist/cjs/tools/annotation/LengthTool.js CHANGED
@@ -28,6 +28,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
29
  const enums_1 = require("../../enums");
30
30
  const core_1 = require("@cornerstonejs/core");
31
+ const getCalibratedUnits_1 = require("../../utilities/getCalibratedUnits");
32
+ const roundNumber_1 = __importDefault(require("../../utilities/roundNumber"));
31
33
  const base_1 = require("../base");
32
34
  const throttle_1 = __importDefault(require("../../utilities/throttle"));
33
35
  const annotationState_1 = require("../../stateManagement/annotation/annotationState");
@@ -398,7 +400,7 @@ class LengthTool extends base_1.AnnotationTool {
398
400
  if (length === undefined || length === null || isNaN(length)) {
399
401
  return;
400
402
  }
401
- const textLines = [`${length.toFixed(2)} ${unit}`];
403
+ const textLines = [`${(0, roundNumber_1.default)(length)} ${unit}`];
402
404
  return textLines;
403
405
  }
404
406
  _calculateLength(pos1, pos2) {
@@ -420,8 +422,9 @@ class LengthTool extends base_1.AnnotationTool {
420
422
  if (!image) {
421
423
  continue;
422
424
  }
423
- const { imageData, dimensions, hasPixelSpacing } = image;
424
- const length = this._calculateLength(worldPos1, worldPos2);
425
+ const { imageData, dimensions } = image;
426
+ const scale = (0, getCalibratedUnits_1.getCalibratedScale)(image);
427
+ const length = this._calculateLength(worldPos1, worldPos2) / scale;
425
428
  const index1 = transformWorldToIndex(imageData, worldPos1);
426
429
  const index2 = transformWorldToIndex(imageData, worldPos2);
427
430
  this._isInsideVolume(index1, index2, dimensions)
@@ -429,7 +432,7 @@ class LengthTool extends base_1.AnnotationTool {
429
432
  : (this.isHandleOutsideImage = true);
430
433
  cachedStats[targetId] = {
431
434
  length,
432
- unit: hasPixelSpacing ? 'mm' : 'px',
435
+ unit: (0, getCalibratedUnits_1.getCalibratedLengthUnits)(null, image),
433
436
  };
434
437
  }
435
438
  annotation.invalidated = false;
package/dist/cjs/tools/annotation/LengthTool.js.map CHANGED
@@ -1 +1 @@
1
- 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1
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package/dist/cjs/tools/annotation/PlanarFreehandROITool.js CHANGED
@@ -5,6 +5,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const core_1 = require("@cornerstonejs/core");
7
7
  const gl_matrix_1 = require("gl-matrix");
8
+ const getCalibratedUnits_1 = require("../../utilities/getCalibratedUnits");
9
+ const roundNumber_1 = __importDefault(require("../../utilities/roundNumber"));
8
10
  const enums_1 = require("../../enums");
9
11
  const base_1 = require("../base");
10
12
  const annotationState_1 = require("../../stateManagement/annotation/annotationState");
@@ -263,9 +265,10 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
263
265
  if (!image) {
264
266
  continue;
265
267
  }
266
- const { imageData, metadata, hasPixelSpacing } = image;
268
+ const { imageData, metadata } = image;
267
269
  const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
268
- const area = math_1.polyline.calculateAreaOfPoints(canvasCoordinates);
270
+ const scale = (0, getCalibratedUnits_1.getCalibratedScale)(image);
271
+ const area = math_1.polyline.calculateAreaOfPoints(canvasCoordinates) / scale / scale;
269
272
  const worldPosIndex = core_1.utilities.transformWorldToIndex(imageData, points[0]);
270
273
  worldPosIndex[0] = Math.floor(worldPosIndex[0]);
271
274
  worldPosIndex[1] = Math.floor(worldPosIndex[1]);
@@ -355,7 +358,7 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
355
358
  mean,
356
359
  max,
357
360
  stdDev,
358
- areaUnit: hasPixelSpacing ? 'mm' : 'px',
361
+ areaUnit: (0, getCalibratedUnits_1.getCalibratedAreaUnits)(null, image),
359
362
  modalityUnit,
360
363
  };
361
364
  }
@@ -399,17 +402,17 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
399
402
  if (area) {
400
403
  const areaLine = isEmptyArea
401
404
  ? `Area: Oblique not supported`
402
- : `Area: ${area.toFixed(2)} ${areaUnit}\xb2`;
405
+ : `Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`;
403
406
  textLines.push(areaLine);
404
407
  }
405
408
  if (mean) {
406
- textLines.push(`Mean: ${mean.toFixed(2)} ${modalityUnit}`);
409
+ textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
407
410
  }
408
411
  if (max) {
409
- textLines.push(`Max: ${max.toFixed(2)} ${modalityUnit}`);
412
+ textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
410
413
  }
411
414
  if (stdDev) {
412
- textLines.push(`Std Dev: ${stdDev.toFixed(2)} ${modalityUnit}`);
415
+ textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
413
416
  }
414
417
  return textLines;
415
418
  };
package/dist/cjs/tools/annotation/PlanarFreehandROITool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/cjs/tools/annotation/RectangleROITool.js CHANGED
@@ -28,6 +28,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
29
  const base_1 = require("../base");
30
30
  const core_1 = require("@cornerstonejs/core");
31
+ const getCalibratedUnits_1 = require("../../utilities/getCalibratedUnits");
32
+ const roundNumber_1 = __importDefault(require("../../utilities/roundNumber"));
31
33
  const throttle_1 = __importDefault(require("../../utilities/throttle"));
32
34
  const stateManagement_1 = require("../../stateManagement");
33
35
  const annotationLocking_1 = require("../../stateManagement/annotation/annotationLocking");
@@ -477,10 +479,10 @@ class RectangleROITool extends base_1.AnnotationTool {
477
479
  return;
478
480
  }
479
481
  const textLines = [];
480
- textLines.push(`Area: ${area.toFixed(2)} ${areaUnit}\xb2`);
481
- textLines.push(`Mean: ${mean.toFixed(2)} ${modalityUnit}`);
482
- textLines.push(`Max: ${max.toFixed(2)} ${modalityUnit}`);
483
- textLines.push(`Std Dev: ${stdDev.toFixed(2)} ${modalityUnit}`);
482
+ textLines.push(`Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`);
483
+ textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
484
+ textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
485
+ textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
484
486
  return textLines;
485
487
  };
486
488
  this._calculateCachedStats = (annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement, modalityUnitOptions) => {
@@ -496,7 +498,7 @@ class RectangleROITool extends base_1.AnnotationTool {
496
498
  if (!image) {
497
499
  continue;
498
500
  }
499
- const { dimensions, imageData, metadata, hasPixelSpacing } = image;
501
+ const { dimensions, imageData, metadata } = image;
500
502
  const scalarData = 'getScalarData' in image ? image.getScalarData() : image.scalarData;
501
503
  const worldPos1Index = transformWorldToIndex(imageData, worldPos1);
502
504
  worldPos1Index[0] = Math.floor(worldPos1Index[0]);
@@ -515,7 +517,8 @@ class RectangleROITool extends base_1.AnnotationTool {
515
517
  const kMin = Math.min(worldPos1Index[2], worldPos2Index[2]);
516
518
  const kMax = Math.max(worldPos1Index[2], worldPos2Index[2]);
517
519
  const { worldWidth, worldHeight } = (0, getWorldWidthAndHeightFromCorners_1.default)(viewPlaneNormal, viewUp, worldPos1, worldPos2);
518
- const area = Math.abs(worldWidth * worldHeight);
520
+ const scale = (0, getCalibratedUnits_1.getCalibratedScale)(image);
521
+ const area = Math.abs(worldWidth * worldHeight) / (scale * scale);
519
522
  let count = 0;
520
523
  let mean = 0;
521
524
  let stdDev = 0;
@@ -553,7 +556,7 @@ class RectangleROITool extends base_1.AnnotationTool {
553
556
  mean,
554
557
  stdDev,
555
558
  max,
556
- areaUnit: hasPixelSpacing ? 'mm' : 'px',
559
+ areaUnit: (0, getCalibratedUnits_1.getCalibratedAreaUnits)(null, image),
557
560
  modalityUnit,
558
561
  };
559
562
  }
package/dist/cjs/tools/annotation/RectangleROITool.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/cjs/tools/base/AnnotationDisplayTool.js CHANGED
@@ -4,7 +4,6 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  const core_1 = require("@cornerstonejs/core");
7
- const gl_matrix_1 = require("gl-matrix");
8
7
  const BaseTool_1 = __importDefault(require("./BaseTool"));
9
8
  const annotationState_1 = require("../../stateManagement/annotation/annotationState");
10
9
  const triggerAnnotationRender_1 = __importDefault(require("../../utilities/triggerAnnotationRender"));
@@ -15,17 +14,12 @@ class AnnotationDisplayTool extends BaseTool_1.default {
15
14
  constructor() {
16
15
  super(...arguments);
17
16
  this.onImageSpacingCalibrated = (evt) => {
18
- const { element, rowScale, columnScale, imageId, imageData: calibratedImageData, worldToIndex: nonCalibratedWorldToIndex, } = evt.detail;
19
- const { viewport } = (0, core_1.getEnabledElement)(element);
20
- if (viewport instanceof core_1.VolumeViewport) {
21
- throw new Error('Cannot calibrate a volume viewport');
22
- }
23
- const calibratedIndexToWorld = calibratedImageData.getIndexToWorld();
17
+ const { element, imageId } = evt.detail;
24
18
  const imageURI = core_1.utilities.imageIdToURI(imageId);
25
- const stateManager = (0, annotationState_1.getAnnotationManager)();
26
- const framesOfReference = stateManager.getFramesOfReference();
19
+ const annotationManager = (0, annotationState_1.getAnnotationManager)();
20
+ const framesOfReference = annotationManager.getFramesOfReference();
27
21
  framesOfReference.forEach((frameOfReference) => {
28
- const frameOfReferenceSpecificAnnotations = stateManager.getAnnotations(frameOfReference);
22
+ const frameOfReferenceSpecificAnnotations = annotationManager.getAnnotations(frameOfReference);
29
23
  const toolSpecificAnnotations = frameOfReferenceSpecificAnnotations[this.getToolName()];
30
24
  if (!toolSpecificAnnotations || !toolSpecificAnnotations.length) {
31
25
  return;
@@ -35,19 +29,6 @@ class AnnotationDisplayTool extends BaseTool_1.default {
35
29
  if (referencedImageURI === imageURI) {
36
30
  annotation.invalidated = true;
37
31
  annotation.data.cachedStats = {};
38
- annotation.data.handles.points = annotation.data.handles.points.map((point) => {
39
- const p = gl_matrix_1.vec4.fromValues(...point, 1);
40
- const pCalibrated = gl_matrix_1.vec4.fromValues(0, 0, 0, 1);
41
- const nonCalibratedIndexVec4 = gl_matrix_1.vec4.create();
42
- gl_matrix_1.vec4.transformMat4(nonCalibratedIndexVec4, p, nonCalibratedWorldToIndex);
43
- const calibratedIndex = [
44
- columnScale * nonCalibratedIndexVec4[0],
45
- rowScale * nonCalibratedIndexVec4[1],
46
- nonCalibratedIndexVec4[2],
47
- ];
48
- gl_matrix_1.vec4.transformMat4(pCalibrated, gl_matrix_1.vec4.fromValues(calibratedIndex[0], calibratedIndex[1], calibratedIndex[2], 1), calibratedIndexToWorld);
49
- return pCalibrated.slice(0, 3);
50
- });
51
32
  }
52
33
  });
53
34
  (0, triggerAnnotationRender_1.default)(element);