@cornerstonejs/tools 1.32.3 → 1.34.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/eventListeners/index.d.ts +2 -2
- package/dist/cjs/eventListeners/index.js +2 -1
- package/dist/cjs/eventListeners/index.js.map +1 -1
- package/dist/cjs/eventListeners/segmentation/imageChangeEventListener.d.ts +5 -0
- package/dist/cjs/eventListeners/segmentation/imageChangeEventListener.js +143 -0
- package/dist/cjs/eventListeners/segmentation/imageChangeEventListener.js.map +1 -0
- package/dist/cjs/eventListeners/segmentation/index.d.ts +2 -1
- package/dist/cjs/eventListeners/segmentation/index.js +3 -1
- package/dist/cjs/eventListeners/segmentation/index.js.map +1 -1
- package/dist/cjs/eventListeners/segmentation/segmentationDataModifiedEventListener.js +31 -5
- package/dist/cjs/eventListeners/segmentation/segmentationDataModifiedEventListener.js.map +1 -1
- package/dist/cjs/store/SynchronizerManager/Synchronizer.d.ts +1 -0
- package/dist/cjs/store/SynchronizerManager/Synchronizer.js +17 -1
- package/dist/cjs/store/SynchronizerManager/Synchronizer.js.map +1 -1
- package/dist/cjs/store/addEnabledElement.js +1 -0
- package/dist/cjs/store/addEnabledElement.js.map +1 -1
- package/dist/cjs/store/removeEnabledElement.js +2 -0
- package/dist/cjs/store/removeEnabledElement.js.map +1 -1
- package/dist/cjs/synchronizers/callbacks/areViewportsCoplanar .d.ts +1 -1
- package/dist/cjs/synchronizers/callbacks/areViewportsCoplanar .js.map +1 -1
- package/dist/cjs/synchronizers/callbacks/{stackImageSyncCallback.d.ts → imageSliceSyncCallback.d.ts} +1 -1
- package/dist/cjs/synchronizers/callbacks/{stackImageSyncCallback.js → imageSliceSyncCallback.js} +8 -4
- package/dist/cjs/synchronizers/callbacks/{stackImageSyncCallback.js.map → imageSliceSyncCallback.js.map} +1 -1
- package/dist/cjs/synchronizers/index.d.ts +3 -2
- package/dist/cjs/synchronizers/index.js +5 -3
- package/dist/cjs/synchronizers/index.js.map +1 -1
- package/dist/cjs/synchronizers/synchronizers/{createStackImageSynchronizer.d.ts → createImageSliceSynchronizer.d.ts} +1 -1
- package/dist/cjs/synchronizers/synchronizers/createImageSliceSynchronizer.js +17 -0
- package/dist/cjs/synchronizers/synchronizers/createImageSliceSynchronizer.js.map +1 -0
- package/dist/cjs/synchronizers/synchronizers/index.d.ts +3 -2
- package/dist/cjs/synchronizers/synchronizers/index.js +5 -3
- package/dist/cjs/synchronizers/synchronizers/index.js.map +1 -1
- package/dist/cjs/tools/annotation/CircleROITool.js +3 -1
- package/dist/cjs/tools/annotation/CircleROITool.js.map +1 -1
- package/dist/cjs/tools/annotation/EllipticalROITool.js +1 -1
- package/dist/cjs/tools/annotation/EllipticalROITool.js.map +1 -1
- package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.d.ts +2 -1
- package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.js +23 -10
- package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.js.map +1 -1
- package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.d.ts +1 -1
- package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.js +36 -22
- package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.js.map +1 -1
- package/dist/cjs/tools/displayTools/Labelmap/validateRepresentationData.js +6 -5
- package/dist/cjs/tools/displayTools/Labelmap/validateRepresentationData.js.map +1 -1
- package/dist/cjs/tools/segmentation/BrushTool.js +40 -45
- package/dist/cjs/tools/segmentation/BrushTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/CircleScissorsTool.d.ts +4 -2
- package/dist/cjs/tools/segmentation/CircleScissorsTool.js +18 -17
- package/dist/cjs/tools/segmentation/CircleScissorsTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/PaintFillTool.js +28 -5
- package/dist/cjs/tools/segmentation/PaintFillTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/RectangleScissorsTool.d.ts +3 -1
- package/dist/cjs/tools/segmentation/RectangleScissorsTool.js +15 -16
- package/dist/cjs/tools/segmentation/RectangleScissorsTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/SphereScissorsTool.d.ts +4 -2
- package/dist/cjs/tools/segmentation/SphereScissorsTool.js +20 -20
- package/dist/cjs/tools/segmentation/SphereScissorsTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/eraseCircle.d.ts +2 -10
- package/dist/cjs/tools/segmentation/strategies/eraseCircle.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/eraseRectangle.d.ts +4 -8
- package/dist/cjs/tools/segmentation/strategies/eraseRectangle.js +4 -20
- package/dist/cjs/tools/segmentation/strategies/eraseRectangle.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/eraseSphere.d.ts +2 -10
- package/dist/cjs/tools/segmentation/strategies/eraseSphere.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/fillCircle.d.ts +3 -11
- package/dist/cjs/tools/segmentation/strategies/fillCircle.js +57 -32
- package/dist/cjs/tools/segmentation/strategies/fillCircle.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/fillRectangle.d.ts +2 -7
- package/dist/cjs/tools/segmentation/strategies/fillRectangle.js +16 -8
- package/dist/cjs/tools/segmentation/strategies/fillRectangle.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/fillSphere.d.ts +2 -10
- package/dist/cjs/tools/segmentation/strategies/fillSphere.js +31 -17
- package/dist/cjs/tools/segmentation/strategies/fillSphere.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/utils/getStrategyData.d.ts +9 -0
- package/dist/cjs/tools/segmentation/strategies/utils/getStrategyData.js +43 -0
- package/dist/cjs/tools/segmentation/strategies/utils/getStrategyData.js.map +1 -0
- package/dist/cjs/tools/segmentation/strategies/utils/isWithinThreshold.d.ts +2 -2
- package/dist/cjs/tools/segmentation/strategies/utils/isWithinThreshold.js +2 -2
- package/dist/cjs/tools/segmentation/strategies/utils/isWithinThreshold.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/utils/stackVolumeCheck.d.ts +5 -0
- package/dist/cjs/tools/segmentation/strategies/utils/stackVolumeCheck.js +13 -0
- package/dist/cjs/tools/segmentation/strategies/utils/stackVolumeCheck.js.map +1 -0
- package/dist/cjs/types/LabelmapToolOperationData.d.ts +14 -0
- package/dist/cjs/types/LabelmapToolOperationData.js +3 -0
- package/dist/cjs/types/LabelmapToolOperationData.js.map +1 -0
- package/dist/cjs/types/LabelmapTypes.d.ts +5 -1
- package/dist/cjs/types/index.d.ts +2 -1
- package/dist/cjs/utilities/math/ellipse/pointInEllipse.d.ts +7 -9
- package/dist/cjs/utilities/math/ellipse/pointInEllipse.js +19 -11
- package/dist/cjs/utilities/math/ellipse/pointInEllipse.js.map +1 -1
- package/dist/esm/eventListeners/index.js +2 -2
- package/dist/esm/eventListeners/index.js.map +1 -1
- package/dist/esm/eventListeners/segmentation/imageChangeEventListener.js +115 -0
- package/dist/esm/eventListeners/segmentation/imageChangeEventListener.js.map +1 -0
- package/dist/esm/eventListeners/segmentation/index.js +2 -1
- package/dist/esm/eventListeners/segmentation/index.js.map +1 -1
- package/dist/esm/eventListeners/segmentation/segmentationDataModifiedEventListener.js +32 -6
- package/dist/esm/eventListeners/segmentation/segmentationDataModifiedEventListener.js.map +1 -1
- package/dist/esm/store/SynchronizerManager/Synchronizer.js +17 -1
- package/dist/esm/store/SynchronizerManager/Synchronizer.js.map +1 -1
- package/dist/esm/store/addEnabledElement.js +2 -1
- package/dist/esm/store/addEnabledElement.js.map +1 -1
- package/dist/esm/store/removeEnabledElement.js +2 -0
- package/dist/esm/store/removeEnabledElement.js.map +1 -1
- package/dist/esm/synchronizers/callbacks/areViewportsCoplanar .js.map +1 -1
- package/dist/esm/synchronizers/callbacks/{stackImageSyncCallback.js → imageSliceSyncCallback.js} +8 -4
- package/dist/esm/synchronizers/callbacks/imageSliceSyncCallback.js.map +1 -0
- package/dist/esm/synchronizers/index.js +3 -2
- package/dist/esm/synchronizers/index.js.map +1 -1
- package/dist/esm/synchronizers/synchronizers/createImageSliceSynchronizer.js +11 -0
- package/dist/esm/synchronizers/synchronizers/createImageSliceSynchronizer.js.map +1 -0
- package/dist/esm/synchronizers/synchronizers/index.js +3 -2
- package/dist/esm/synchronizers/synchronizers/index.js.map +1 -1
- package/dist/esm/tools/annotation/CircleROITool.js +4 -2
- package/dist/esm/tools/annotation/CircleROITool.js.map +1 -1
- package/dist/esm/tools/annotation/EllipticalROITool.js +1 -1
- package/dist/esm/tools/annotation/EllipticalROITool.js.map +1 -1
- package/dist/esm/tools/displayTools/Labelmap/addLabelmapToElement.js +24 -11
- package/dist/esm/tools/displayTools/Labelmap/addLabelmapToElement.js.map +1 -1
- package/dist/esm/tools/displayTools/Labelmap/labelmapDisplay.js +36 -22
- package/dist/esm/tools/displayTools/Labelmap/labelmapDisplay.js.map +1 -1
- package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js +6 -5
- package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js.map +1 -1
- package/dist/esm/tools/segmentation/BrushTool.js +38 -29
- package/dist/esm/tools/segmentation/BrushTool.js.map +1 -1
- package/dist/esm/tools/segmentation/CircleScissorsTool.js +27 -15
- package/dist/esm/tools/segmentation/CircleScissorsTool.js.map +1 -1
- package/dist/esm/tools/segmentation/PaintFillTool.js +28 -5
- package/dist/esm/tools/segmentation/PaintFillTool.js.map +1 -1
- package/dist/esm/tools/segmentation/RectangleScissorsTool.js +26 -17
- package/dist/esm/tools/segmentation/RectangleScissorsTool.js.map +1 -1
- package/dist/esm/tools/segmentation/SphereScissorsTool.js +28 -17
- package/dist/esm/tools/segmentation/SphereScissorsTool.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/eraseCircle.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/eraseRectangle.js +4 -20
- package/dist/esm/tools/segmentation/strategies/eraseRectangle.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/eraseSphere.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/fillCircle.js +56 -31
- package/dist/esm/tools/segmentation/strategies/fillCircle.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/fillRectangle.js +16 -8
- package/dist/esm/tools/segmentation/strategies/fillRectangle.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/fillSphere.js +32 -18
- package/dist/esm/tools/segmentation/strategies/fillSphere.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js +40 -0
- package/dist/esm/tools/segmentation/strategies/utils/getStrategyData.js.map +1 -0
- package/dist/esm/tools/segmentation/strategies/utils/isWithinThreshold.js +2 -2
- package/dist/esm/tools/segmentation/strategies/utils/isWithinThreshold.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/utils/stackVolumeCheck.js +9 -0
- package/dist/esm/tools/segmentation/strategies/utils/stackVolumeCheck.js.map +1 -0
- package/dist/esm/types/LabelmapToolOperationData.js +2 -0
- package/dist/esm/types/LabelmapToolOperationData.js.map +1 -0
- package/dist/esm/utilities/math/ellipse/pointInEllipse.js +19 -11
- package/dist/esm/utilities/math/ellipse/pointInEllipse.js.map +1 -1
- package/dist/types/eventListeners/index.d.ts +2 -2
- package/dist/types/eventListeners/index.d.ts.map +1 -1
- package/dist/types/eventListeners/segmentation/imageChangeEventListener.d.ts +6 -0
- package/dist/types/eventListeners/segmentation/imageChangeEventListener.d.ts.map +1 -0
- package/dist/types/eventListeners/segmentation/index.d.ts +2 -1
- package/dist/types/eventListeners/segmentation/index.d.ts.map +1 -1
- package/dist/types/eventListeners/segmentation/segmentationDataModifiedEventListener.d.ts.map +1 -1
- package/dist/types/store/SynchronizerManager/Synchronizer.d.ts +1 -0
- package/dist/types/store/SynchronizerManager/Synchronizer.d.ts.map +1 -1
- package/dist/types/store/addEnabledElement.d.ts.map +1 -1
- package/dist/types/store/removeEnabledElement.d.ts.map +1 -1
- package/dist/types/synchronizers/callbacks/areViewportsCoplanar .d.ts +1 -1
- package/dist/types/synchronizers/callbacks/areViewportsCoplanar .d.ts.map +1 -1
- package/dist/types/synchronizers/callbacks/{stackImageSyncCallback.d.ts → imageSliceSyncCallback.d.ts} +2 -2
- package/dist/types/synchronizers/callbacks/imageSliceSyncCallback.d.ts.map +1 -0
- package/dist/types/synchronizers/index.d.ts +3 -2
- package/dist/types/synchronizers/index.d.ts.map +1 -1
- package/dist/types/synchronizers/synchronizers/createImageSliceSynchronizer.d.ts +3 -0
- package/dist/types/synchronizers/synchronizers/createImageSliceSynchronizer.d.ts.map +1 -0
- package/dist/types/synchronizers/synchronizers/index.d.ts +3 -2
- package/dist/types/synchronizers/synchronizers/index.d.ts.map +1 -1
- package/dist/types/tools/annotation/CircleROITool.d.ts.map +1 -1
- package/dist/types/tools/displayTools/Labelmap/addLabelmapToElement.d.ts +2 -1
- package/dist/types/tools/displayTools/Labelmap/addLabelmapToElement.d.ts.map +1 -1
- package/dist/types/tools/displayTools/Labelmap/labelmapDisplay.d.ts +1 -1
- package/dist/types/tools/displayTools/Labelmap/labelmapDisplay.d.ts.map +1 -1
- package/dist/types/tools/displayTools/Labelmap/validateRepresentationData.d.ts.map +1 -1
- package/dist/types/tools/segmentation/BrushTool.d.ts.map +1 -1
- package/dist/types/tools/segmentation/CircleScissorsTool.d.ts +4 -2
- package/dist/types/tools/segmentation/CircleScissorsTool.d.ts.map +1 -1
- package/dist/types/tools/segmentation/PaintFillTool.d.ts.map +1 -1
- package/dist/types/tools/segmentation/RectangleScissorsTool.d.ts +3 -1
- package/dist/types/tools/segmentation/RectangleScissorsTool.d.ts.map +1 -1
- package/dist/types/tools/segmentation/SphereScissorsTool.d.ts +4 -2
- package/dist/types/tools/segmentation/SphereScissorsTool.d.ts.map +1 -1
- package/dist/types/tools/segmentation/strategies/eraseCircle.d.ts +2 -10
- package/dist/types/tools/segmentation/strategies/eraseCircle.d.ts.map +1 -1
- package/dist/types/tools/segmentation/strategies/eraseRectangle.d.ts +4 -8
- package/dist/types/tools/segmentation/strategies/eraseRectangle.d.ts.map +1 -1
- package/dist/types/tools/segmentation/strategies/eraseSphere.d.ts +2 -10
- package/dist/types/tools/segmentation/strategies/eraseSphere.d.ts.map +1 -1
- package/dist/types/tools/segmentation/strategies/fillCircle.d.ts +3 -11
- package/dist/types/tools/segmentation/strategies/fillCircle.d.ts.map +1 -1
- package/dist/types/tools/segmentation/strategies/fillRectangle.d.ts +2 -7
- package/dist/types/tools/segmentation/strategies/fillRectangle.d.ts.map +1 -1
- package/dist/types/tools/segmentation/strategies/fillSphere.d.ts +2 -10
- package/dist/types/tools/segmentation/strategies/fillSphere.d.ts.map +1 -1
- package/dist/types/tools/segmentation/strategies/utils/getStrategyData.d.ts +10 -0
- package/dist/types/tools/segmentation/strategies/utils/getStrategyData.d.ts.map +1 -0
- package/dist/types/tools/segmentation/strategies/utils/isWithinThreshold.d.ts +2 -2
- package/dist/types/tools/segmentation/strategies/utils/isWithinThreshold.d.ts.map +1 -1
- package/dist/types/tools/segmentation/strategies/utils/stackVolumeCheck.d.ts +6 -0
- package/dist/types/tools/segmentation/strategies/utils/stackVolumeCheck.d.ts.map +1 -0
- package/dist/types/types/LabelmapToolOperationData.d.ts +15 -0
- package/dist/types/types/LabelmapToolOperationData.d.ts.map +1 -0
- package/dist/types/types/LabelmapTypes.d.ts +5 -1
- package/dist/types/types/LabelmapTypes.d.ts.map +1 -1
- package/dist/types/types/index.d.ts +2 -1
- package/dist/types/types/index.d.ts.map +1 -1
- package/dist/types/utilities/math/ellipse/pointInEllipse.d.ts +7 -9
- package/dist/types/utilities/math/ellipse/pointInEllipse.d.ts.map +1 -1
- package/dist/umd/index.js +1 -1
- package/dist/umd/index.js.map +1 -1
- package/package.json +3 -3
- package/src/eventListeners/index.ts +2 -0
- package/src/eventListeners/segmentation/imageChangeEventListener.ts +215 -0
- package/src/eventListeners/segmentation/index.ts +2 -0
- package/src/eventListeners/segmentation/segmentationDataModifiedEventListener.ts +70 -9
- package/src/store/SynchronizerManager/Synchronizer.ts +28 -3
- package/src/store/addEnabledElement.ts +2 -0
- package/src/store/removeEnabledElement.ts +3 -0
- package/src/synchronizers/callbacks/areViewportsCoplanar .ts +2 -2
- package/src/synchronizers/callbacks/{stackImageSyncCallback.ts → imageSliceSyncCallback.ts} +16 -8
- package/src/synchronizers/index.ts +5 -1
- package/src/synchronizers/synchronizers/{createStackImageSynchronizer.ts → createImageSliceSynchronizer.ts} +8 -5
- package/src/synchronizers/synchronizers/index.ts +4 -1
- package/src/tools/annotation/CircleROITool.ts +5 -5
- package/src/tools/annotation/EllipticalROITool.ts +1 -1
- package/src/tools/displayTools/Labelmap/addLabelmapToElement.ts +51 -22
- package/src/tools/displayTools/Labelmap/labelmapDisplay.ts +65 -35
- package/src/tools/displayTools/Labelmap/validateRepresentationData.ts +17 -11
- package/src/tools/segmentation/BrushTool.ts +78 -39
- package/src/tools/segmentation/CircleScissorsTool.ts +46 -29
- package/src/tools/segmentation/PaintFillTool.ts +45 -8
- package/src/tools/segmentation/RectangleScissorsTool.ts +41 -31
- package/src/tools/segmentation/SphereScissorsTool.ts +46 -28
- package/src/tools/segmentation/strategies/eraseCircle.ts +3 -11
- package/src/tools/segmentation/strategies/eraseRectangle.ts +13 -42
- package/src/tools/segmentation/strategies/eraseSphere.ts +2 -10
- package/src/tools/segmentation/strategies/fillCircle.ts +93 -61
- package/src/tools/segmentation/strategies/fillRectangle.ts +31 -22
- package/src/tools/segmentation/strategies/fillSphere.ts +51 -41
- package/src/tools/segmentation/strategies/utils/getStrategyData.ts +58 -0
- package/src/tools/segmentation/strategies/utils/isWithinThreshold.ts +3 -2
- package/src/tools/segmentation/strategies/utils/stackVolumeCheck.ts +33 -0
- package/src/types/LabelmapToolOperationData.ts +27 -0
- package/src/types/LabelmapTypes.ts +16 -1
- package/src/types/index.ts +8 -0
- package/src/utilities/math/ellipse/pointInEllipse.ts +43 -22
- package/dist/cjs/synchronizers/synchronizers/createStackImageSynchronizer.js +0 -15
- package/dist/cjs/synchronizers/synchronizers/createStackImageSynchronizer.js.map +0 -1
- package/dist/esm/synchronizers/callbacks/stackImageSyncCallback.js.map +0 -1
- package/dist/esm/synchronizers/synchronizers/createStackImageSynchronizer.js +0 -9
- package/dist/esm/synchronizers/synchronizers/createStackImageSynchronizer.js.map +0 -1
- package/dist/types/synchronizers/callbacks/stackImageSyncCallback.d.ts.map +0 -1
- package/dist/types/synchronizers/synchronizers/createStackImageSynchronizer.d.ts +0 -3
- package/dist/types/synchronizers/synchronizers/createStackImageSynchronizer.d.ts.map +0 -1
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import { cache, getEnabledElement
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import { cache, getEnabledElement } from '@cornerstonejs/core';
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import { BaseTool } from '../base';
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import { Events, SegmentationRepresentations } from '../../enums';
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import triggerAnnotationRenderForViewportIds from '../../utilities/triggerAnnotationRenderForViewportIds';
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import { config as segmentationConfig, segmentLocking, segmentIndex as segmentIndexController, activeSegmentation, } from '../../stateManagement/segmentation';
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import { getSegmentation } from '../../stateManagement/segmentation/segmentationState';
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import { isVolumeSegmentation } from './strategies/utils/stackVolumeCheck';
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class SphereScissorsTool extends BaseTool {
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const segmentation = cache.getVolume(volumeId);
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62
|
const viewportIdsToRender = [viewport.id];
|
|
65
63
|
this.editData = {
|
|
66
64
|
annotation,
|
|
67
|
-
segmentation,
|
|
68
65
|
centerCanvas: canvasPos,
|
|
66
|
+
segmentationRepresentationUID,
|
|
69
67
|
segmentIndex,
|
|
70
68
|
segmentsLocked,
|
|
71
69
|
segmentColor,
|
|
72
|
-
segmentationId,
|
|
73
70
|
toolGroupId,
|
|
74
71
|
viewportIdsToRender,
|
|
75
72
|
handleIndex: 3,
|
|
@@ -77,6 +74,24 @@ class SphereScissorsTool extends BaseTool {
|
|
|
77
74
|
newAnnotation: true,
|
|
78
75
|
hasMoved: false,
|
|
79
76
|
};
|
|
77
|
+
const { representationData } = getSegmentation(segmentationId);
|
|
78
|
+
const labelmapData = representationData[SegmentationRepresentations.Labelmap];
|
|
79
|
+
if (isVolumeSegmentation(labelmapData)) {
|
|
80
|
+
const { volumeId } = labelmapData;
|
|
81
|
+
const segmentation = cache.getVolume(volumeId);
|
|
82
|
+
this.editData = {
|
|
83
|
+
...this.editData,
|
|
84
|
+
volumeId,
|
|
85
|
+
referencedVolumeId: segmentation.referencedVolumeId,
|
|
86
|
+
};
|
|
87
|
+
}
|
|
88
|
+
else {
|
|
89
|
+
const { imageIdReferenceMap } = labelmapData;
|
|
90
|
+
this.editData = {
|
|
91
|
+
...this.editData,
|
|
92
|
+
imageIdReferenceMap,
|
|
93
|
+
};
|
|
94
|
+
}
|
|
80
95
|
this._activateDraw(element);
|
|
81
96
|
hideElementCursor(element);
|
|
82
97
|
evt.preventDefault();
|
|
@@ -123,7 +138,7 @@ class SphereScissorsTool extends BaseTool {
|
|
|
123
138
|
this._endCallback = (evt) => {
|
|
124
139
|
const eventDetail = evt.detail;
|
|
125
140
|
const { element } = eventDetail;
|
|
126
|
-
const { annotation, newAnnotation, hasMoved,
|
|
141
|
+
const { annotation, newAnnotation, hasMoved, segmentIndex, segmentationRepresentationUID, segmentsLocked, } = this.editData;
|
|
127
142
|
const { data } = annotation;
|
|
128
143
|
const { viewPlaneNormal, viewUp } = annotation.metadata;
|
|
129
144
|
if (newAnnotation && !hasMoved) {
|
|
@@ -134,21 +149,17 @@ class SphereScissorsTool extends BaseTool {
|
|
|
134
149
|
this._deactivateDraw(element);
|
|
135
150
|
resetElementCursor(element);
|
|
136
151
|
const enabledElement = getEnabledElement(element);
|
|
137
|
-
const { viewport } = enabledElement;
|
|
138
|
-
this.editData = null;
|
|
139
|
-
this.isDrawing = false;
|
|
140
|
-
if (viewport instanceof StackViewport) {
|
|
141
|
-
throw new Error('Not implemented yet');
|
|
142
|
-
}
|
|
143
152
|
const operationData = {
|
|
153
|
+
...this.editData,
|
|
144
154
|
points: data.handles.points,
|
|
145
|
-
volume: segmentation,
|
|
146
155
|
segmentIndex,
|
|
156
|
+
segmentationRepresentationUID,
|
|
147
157
|
segmentsLocked,
|
|
148
|
-
segmentationId,
|
|
149
158
|
viewPlaneNormal,
|
|
150
159
|
viewUp,
|
|
151
160
|
};
|
|
161
|
+
this.editData = null;
|
|
162
|
+
this.isDrawing = false;
|
|
152
163
|
this.applyActiveStrategy(enabledElement, operationData);
|
|
153
164
|
};
|
|
154
165
|
this._activateDraw = (element) => {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"SphereScissorsTool.js","sourceRoot":"","sources":["../../../../src/tools/segmentation/SphereScissorsTool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,iBAAiB,EAAE,
|
|
1
|
+
{"version":3,"file":"SphereScissorsTool.js","sourceRoot":"","sources":["../../../../src/tools/segmentation/SphereScissorsTool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AAG/D,OAAO,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AAQnC,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,EAAE,MAAM,EAAE,2BAA2B,EAAE,MAAM,aAAa,CAAC;AAClE,OAAO,EAAE,UAAU,IAAI,aAAa,EAAE,MAAM,kBAAkB,CAAC;AAC/D,OAAO,EACL,kBAAkB,EAClB,iBAAiB,GAClB,MAAM,6BAA6B,CAAC;AAErC,OAAO,qCAAqC,MAAM,uDAAuD,CAAC;AAC1G,OAAO,EACL,MAAM,IAAI,kBAAkB,EAC5B,cAAc,EACd,YAAY,IAAI,sBAAsB,EACtC,kBAAkB,GACnB,MAAM,oCAAoC,CAAC;AAE5C,OAAO,EAAE,eAAe,EAAE,MAAM,sDAAsD,CAAC;AAMvF,OAAO,EAAE,oBAAoB,EAAE,MAAM,qCAAqC,CAAC;AAS3E,MAAM,kBAAmB,SAAQ,QAAQ;IAwBvC,YACE,YAA6B,EAAE,EAC/B,mBAA8B;QAC5B,yBAAyB,EAAE,CAAC,OAAO,EAAE,OAAO,CAAC;QAC7C,aAAa,EAAE;YACb,UAAU,EAAE;gBACV,WAAW,EAAE,gBAAgB;aAC9B;YACD,eAAe,EAAE,aAAa;YAC9B,cAAc,EAAE,aAAa;SAC9B;KACF;QAED,KAAK,CAAC,SAAS,EAAE,gBAAgB,CAAC,CAAC;QAWrC,yBAAoB,GAAG,CAAC,GAAoC,EAAQ,EAAE;YACpE,MAAM,WAAW,GAAG,GAAG,CAAC,MAAM,CAAC;YAC/B,MAAM,EAAE,aAAa,EAAE,OAAO,EAAE,GAAG,WAAW,CAAC;YAC/C,MAAM,QAAQ,GAAG,aAAa,CAAC,KAAK,CAAC;YACrC,MAAM,SAAS,GAAG,aAAa,CAAC,MAAM,CAAC;YAEvC,MAAM,cAAc,GAAG,iBAAiB,CAAC,OAAO,CAAC,CAAC;YAClD,MAAM,EAAE,QAAQ,EAAE,eAAe,EAAE,GAAG,cAAc,CAAC;YAErD,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;YAEtB,MAAM,MAAM,GAAG,QAAQ,CAAC,SAAS,EAAE,CAAC;YACpC,MAAM,EAAE,eAAe,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC;YAC3C,MAAM,WAAW,GAAG,IAAI,CAAC,WAAW,CAAC;YAErC,MAAM,gCAAgC,GACpC,kBAAkB,CAAC,mCAAmC,CAAC,WAAW,CAAC,CAAC;YACtE,IAAI,CAAC,gCAAgC,EAAE;gBACrC,MAAM,IAAI,KAAK,CACb,wEAAwE,CACzE,CAAC;aACH;YAED,MAAM,EAAE,6BAA6B,EAAE,cAAc,EAAE,GACrD,gCAAgC,CAAC;YACnC,MAAM,YAAY,GAChB,sBAAsB,CAAC,qBAAqB,CAAC,cAAc,CAAC,CAAC;YAC/D,MAAM,cAAc,GAAG,cAAc,CAAC,iBAAiB,CAAC,cAAc,CAAC,CAAC;YAExE,MAAM,YAAY,GAAG,kBAAkB,CAAC,KAAK,CAAC,uBAAuB,CACnE,WAAW,EACX,6BAA6B,EAC7B,YAAY,CACb,CAAC;YAEF,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;YAGtB,MAAM,UAAU,GAAG;gBACjB,QAAQ,EAAE;oBACR,eAAe,EAAgB,CAAC,GAAG,eAAe,CAAC;oBACnD,MAAM,EAAgB,CAAC,GAAG,MAAM,CAAC;oBACjC,mBAAmB,EAAE,QAAQ,CAAC,sBAAsB,EAAE;oBACtD,iBAAiB,EAAE,EAAE;oBACrB,QAAQ,EAAE,IAAI,CAAC,WAAW,EAAE;oBAC5B,YAAY;iBACb;gBACD,IAAI,EAAE;oBACJ,WAAW,EAAE,IAAI;oBACjB,OAAO,EAAE;wBACP,MAAM,EAAE,CAAC,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,CAAC;wBACpE,iBAAiB,EAAE,IAAI;qBACxB;oBACD,WAAW,EAAE,EAAE;oBACf,WAAW,EAAE,IAAI;iBAClB;aACF,CAAC;YAEF,MAAM,mBAAmB,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;YAE1C,IAAI,CAAC,QAAQ,GAAG;gBACd,UAAU;gBACV,YAAY,EAAE,SAAS;gBACvB,6BAA6B;gBAC7B,YAAY;gBACZ,cAAc;gBACd,YAAY;gBACZ,WAAW;gBACX,mBAAmB;gBACnB,WAAW,EAAE,CAAC;gBACd,aAAa,EAAE,KAAK;gBACpB,aAAa,EAAE,IAAI;gBACnB,QAAQ,EAAE,KAAK;aACT,CAAC;YAET,MAAM,EAAE,kBAAkB,EAAE,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;YAC/D,MAAM,YAAY,GAChB,kBAAkB,CAAC,2BAA2B,CAAC,QAAQ,CAAC,CAAC;YAE3D,IAAI,oBAAoB,CAAC,YAAwC,CAAC,EAAE;gBAClE,MAAM,EAAE,QAAQ,EAAE,GAAG,YAA8C,CAAC;gBACpE,MAAM,YAAY,GAAG,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC;gBAE/C,IAAI,CAAC,QAAQ,GAAG;oBACd,GAAG,IAAI,CAAC,QAAQ;oBAChB,QAAQ;oBACR,kBAAkB,EAAE,YAAY,CAAC,kBAAkB;iBACpD,CAAC;aACH;iBAAM;gBACL,MAAM,EAAE,mBAAmB,EAAE,GAC3B,YAA6C,CAAC;gBAEhD,IAAI,CAAC,QAAQ,GAAG;oBACd,GAAG,IAAI,CAAC,QAAQ;oBAChB,mBAAmB;iBACpB,CAAC;aACH;YAED,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC;YAE5B,iBAAiB,CAAC,OAAO,CAAC,CAAC;YAE3B,GAAG,CAAC,cAAc,EAAE,CAAC;YAErB,qCAAqC,CAAC,eAAe,EAAE,mBAAmB,CAAC,CAAC;YAE5E,OAAO,IAAI,CAAC;QACd,CAAC,CAAC;QAEF,kBAAa,GAAG,CAAC,GAAoC,EAAE,EAAE;YACvD,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;YACtB,MAAM,WAAW,GAAG,GAAG,CAAC,MAAM,CAAC;YAC/B,MAAM,EAAE,OAAO,EAAE,GAAG,WAAW,CAAC;YAChC,MAAM,EAAE,aAAa,EAAE,GAAG,WAAW,CAAC;YACtC,MAAM,mBAAmB,GAAG,aAAa,CAAC,MAAM,CAAC;YACjD,MAAM,cAAc,GAAG,iBAAiB,CAAC,OAAO,CAAC,CAAC;YAClD,MAAM,EAAE,eAAe,EAAE,QAAQ,EAAE,GAAG,cAAc,CAAC;YACrD,MAAM,EAAE,aAAa,EAAE,GAAG,QAAQ,CAAC;YAGnC,MAAM,EAAE,UAAU,EAAE,mBAAmB,EAAE,YAAY,EAAE,GAAG,IAAI,CAAC,QAAQ,CAAC;YACxE,MAAM,EAAE,IAAI,EAAE,GAAG,UAAU,CAAC;YAE5B,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,mBAAmB,CAAC,CAAC,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC;YAC9D,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,mBAAmB,CAAC,CAAC,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC;YAC9D,MAAM,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,CAAC;YAE5C,MAAM,YAAY,GAAiB;gBACjC,YAAY,CAAC,CAAC,CAAC;gBACf,YAAY,CAAC,CAAC,CAAC,GAAG,MAAM;aACzB,CAAC;YACF,MAAM,SAAS,GAAiB,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC;YAC5E,MAAM,UAAU,GAAiB;gBAC/B,YAAY,CAAC,CAAC,CAAC,GAAG,MAAM;gBACxB,YAAY,CAAC,CAAC,CAAC;aAChB,CAAC;YACF,MAAM,WAAW,GAAiB;gBAChC,YAAY,CAAC,CAAC,CAAC,GAAG,MAAM;gBACxB,YAAY,CAAC,CAAC,CAAC;aAChB,CAAC;YAEF,IAAI,CAAC,OAAO,CAAC,MAAM,GAAG;gBACpB,aAAa,CAAC,YAAY,CAAC;gBAC3B,aAAa,CAAC,SAAS,CAAC;gBACxB,aAAa,CAAC,UAAU,CAAC;gBACzB,aAAa,CAAC,WAAW,CAAC;aAC3B,CAAC;YAEF,UAAU,CAAC,WAAW,GAAG,IAAI,CAAC;YAE9B,IAAI,CAAC,QAAQ,CAAC,QAAQ,GAAG,IAAI,CAAC;YAE9B,qCAAqC,CAAC,eAAe,EAAE,mBAAmB,CAAC,CAAC;QAC9E,CAAC,CAAC;QAEF,iBAAY,GAAG,CAAC,GAAoC,EAAE,EAAE;YACtD,MAAM,WAAW,GAAG,GAAG,CAAC,MAAM,CAAC;YAC/B,MAAM,EAAE,OAAO,EAAE,GAAG,WAAW,CAAC;YAEhC,MAAM,EACJ,UAAU,EACV,aAAa,EACb,QAAQ,EACR,YAAY,EACZ,6BAA6B,EAC7B,cAAc,GACf,GAAG,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|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"eraseCircle.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/eraseCircle.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;
|
|
1
|
+
{"version":3,"file":"eraseCircle.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/eraseCircle.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;AAOhD,MAAM,UAAU,iBAAiB,CAC/B,cAAqC,EACrC,aAA4B;IAI5B,MAAM,kBAAkB,GAAG;QACzB,GAAG,aAAa;QAChB,YAAY,EAAE,CAAC;KAChB,CAAC;IAEF,gBAAgB,CAAC,cAAc,EAAE,kBAAkB,CAAC,CAAC;AACvD,CAAC"}
|
|
@@ -1,25 +1,9 @@
|
|
|
1
|
-
import {
|
|
2
|
-
import { getBoundingBoxAroundShape } from '../../../utilities/boundingBox';
|
|
3
|
-
import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
|
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4
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-
import { pointInShapeCallback } from '../../../utilities';
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5
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-
const { transformWorldToIndex } = csUtils;
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1
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+
import { fillInsideRectangle } from './fillRectangle';
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6
2
|
function eraseRectangle(enabledElement, operationData, inside = true) {
|
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7
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-
const
|
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8
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-
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9
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const scalarData = segmentation.getScalarData();
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10
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const rectangleCornersIJK = points.map((world) => {
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11
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return transformWorldToIndex(imageData, world);
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3
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+
const eraseOperationData = Object.assign({}, operationData, {
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4
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+
segmentIndex: 0,
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12
5
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});
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13
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-
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14
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const pointInShape = () => true;
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15
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-
const callback = ({ value, index }) => {
|
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16
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if (segmentsLocked.includes(value)) {
|
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17
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return;
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18
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}
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19
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scalarData[index] = 0;
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20
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-
};
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21
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pointInShapeCallback(imageData, pointInShape, callback, boundsIJK);
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22
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-
triggerSegmentationDataModified(segmentationId);
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6
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+
fillInsideRectangle(enabledElement, eraseOperationData);
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23
7
|
}
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24
8
|
export function eraseInsideRectangle(enabledElement, operationData) {
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25
9
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eraseRectangle(enabledElement, operationData, true);
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"eraseRectangle.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/eraseRectangle.ts"],"names":[],"mappings":"
|
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1
|
+
{"version":3,"file":"eraseRectangle.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/eraseRectangle.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,mBAAmB,EAAE,MAAM,iBAAiB,CAAC;AAMtD,SAAS,cAAc,CACrB,cAAqC,EACrC,aAA4B,EAC5B,MAAM,GAAG,IAAI;IAIb,MAAM,kBAAkB,GAAG,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,aAAa,EAAE;QAC1D,YAAY,EAAE,CAAC;KAChB,CAAC,CAAC;IAEH,mBAAmB,CAAC,cAAc,EAAE,kBAAkB,CAAC,CAAC;AAC1D,CAAC;AAQD,MAAM,UAAU,oBAAoB,CAClC,cAAqC,EACrC,aAA4B;IAE5B,cAAc,CAAC,cAAc,EAAE,aAAa,EAAE,IAAI,CAAC,CAAC;AACtD,CAAC;AAQD,MAAM,UAAU,qBAAqB,CACnC,cAAqC,EACrC,aAA4B;IAE5B,cAAc,CAAC,cAAc,EAAE,aAAa,EAAE,KAAK,CAAC,CAAC;AACvD,CAAC"}
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|
@@ -1 +1 @@
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|
|
1
|
-
{"version":3,"file":"eraseSphere.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/eraseSphere.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;
|
|
1
|
+
{"version":3,"file":"eraseSphere.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/eraseSphere.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;AAOhD,MAAM,UAAU,iBAAiB,CAC/B,cAAqC,EACrC,aAA4B;IAI5B,MAAM,kBAAkB,GAAG,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,aAAa,EAAE;QAC1D,YAAY,EAAE,CAAC;KAChB,CAAC,CAAC;IAEH,gBAAgB,CAAC,cAAc,EAAE,kBAAkB,CAAC,CAAC;AACvD,CAAC"}
|
|
@@ -1,36 +1,24 @@
|
|
|
1
1
|
import { vec3 } from 'gl-matrix';
|
|
2
|
+
import { cache } from '@cornerstonejs/core';
|
|
2
3
|
import { utilities as csUtils } from '@cornerstonejs/core';
|
|
3
4
|
import { getCanvasEllipseCorners, pointInEllipse, } from '../../../utilities/math/ellipse';
|
|
4
5
|
import { getBoundingBoxAroundShape } from '../../../utilities/boundingBox';
|
|
5
6
|
import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
|
|
6
7
|
import { pointInShapeCallback } from '../../../utilities';
|
|
7
8
|
import isWithinThreshold from './utils/isWithinThreshold';
|
|
9
|
+
import { getStrategyData } from './utils/getStrategyData';
|
|
10
|
+
import { isVolumeSegmentation } from './utils/stackVolumeCheck';
|
|
8
11
|
const { transformWorldToIndex } = csUtils;
|
|
9
12
|
function fillCircle(enabledElement, operationData, threshold = false) {
|
|
10
|
-
const {
|
|
11
|
-
const { imageData, dimensions } = segmentationVolume;
|
|
12
|
-
const scalarData = segmentationVolume.getScalarData();
|
|
13
|
+
const { points, segmentsLocked, segmentIndex, segmentationId, strategySpecificConfiguration, } = operationData;
|
|
13
14
|
const { viewport } = enabledElement;
|
|
14
|
-
const
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
const
|
|
20
|
-
const
|
|
21
|
-
const topLeftWorld = viewport.canvasToWorld(topLeftCanvas);
|
|
22
|
-
const bottomRightWorld = viewport.canvasToWorld(bottomRightCanvas);
|
|
23
|
-
const ellipsoidCornersIJK = [
|
|
24
|
-
transformWorldToIndex(imageData, topLeftWorld),
|
|
25
|
-
transformWorldToIndex(imageData, bottomRightWorld),
|
|
26
|
-
];
|
|
27
|
-
const boundsIJK = getBoundingBoxAroundShape(ellipsoidCornersIJK, dimensions);
|
|
28
|
-
const ellipseObj = {
|
|
29
|
-
center: center,
|
|
30
|
-
xRadius: Math.abs(topLeftWorld[0] - bottomRightWorld[0]) / 2,
|
|
31
|
-
yRadius: Math.abs(topLeftWorld[1] - bottomRightWorld[1]) / 2,
|
|
32
|
-
zRadius: Math.abs(topLeftWorld[2] - bottomRightWorld[2]) / 2,
|
|
33
|
-
};
|
|
15
|
+
const data = getStrategyData({ operationData, viewport });
|
|
16
|
+
if (!data) {
|
|
17
|
+
console.warn('No data found for fillCircle');
|
|
18
|
+
return;
|
|
19
|
+
}
|
|
20
|
+
const { imageScalarData, segmentationImageData, segmentationScalarData } = data;
|
|
21
|
+
const { ellipseObj, boundsIJK } = getEllipse(viewport, segmentationImageData, points);
|
|
34
22
|
const modifiedSlicesToUse = new Set();
|
|
35
23
|
let callback;
|
|
36
24
|
if (threshold) {
|
|
@@ -38,8 +26,8 @@ function fillCircle(enabledElement, operationData, threshold = false) {
|
|
|
38
26
|
if (segmentsLocked.includes(value)) {
|
|
39
27
|
return;
|
|
40
28
|
}
|
|
41
|
-
if (isWithinThreshold(index,
|
|
42
|
-
|
|
29
|
+
if (isWithinThreshold(index, imageScalarData, strategySpecificConfiguration)) {
|
|
30
|
+
segmentationScalarData[index] = segmentIndex;
|
|
43
31
|
modifiedSlicesToUse.add(pointIJK[2]);
|
|
44
32
|
}
|
|
45
33
|
};
|
|
@@ -49,11 +37,13 @@ function fillCircle(enabledElement, operationData, threshold = false) {
|
|
|
49
37
|
if (segmentsLocked.includes(value)) {
|
|
50
38
|
return;
|
|
51
39
|
}
|
|
52
|
-
|
|
40
|
+
segmentationScalarData[index] = segmentIndex;
|
|
53
41
|
modifiedSlicesToUse.add(pointIJK[2]);
|
|
54
42
|
};
|
|
55
43
|
}
|
|
56
|
-
pointInShapeCallback(
|
|
44
|
+
pointInShapeCallback(segmentationImageData, (pointLPS) => pointInEllipse(ellipseObj, pointLPS, {
|
|
45
|
+
fast: true,
|
|
46
|
+
}), callback, boundsIJK);
|
|
57
47
|
const arrayOfSlices = Array.from(modifiedSlicesToUse);
|
|
58
48
|
triggerSegmentationDataModified(segmentationId, arrayOfSlices);
|
|
59
49
|
}
|
|
@@ -61,14 +51,49 @@ export function fillInsideCircle(enabledElement, operationData) {
|
|
|
61
51
|
fillCircle(enabledElement, operationData, false);
|
|
62
52
|
}
|
|
63
53
|
export function thresholdInsideCircle(enabledElement, operationData) {
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
|
|
54
|
+
if (isVolumeSegmentation(operationData)) {
|
|
55
|
+
const { referencedVolumeId, volumeId } = operationData;
|
|
56
|
+
const imageVolume = cache.getVolume(referencedVolumeId);
|
|
57
|
+
const segmentation = cache.getVolume(volumeId);
|
|
58
|
+
if (!csUtils.isEqual(segmentation.dimensions, imageVolume.dimensions) ||
|
|
59
|
+
!csUtils.isEqual(segmentation.direction, imageVolume.direction)) {
|
|
60
|
+
throw new Error('Only source data the same dimensions/size/orientation as the segmentation currently supported.');
|
|
61
|
+
}
|
|
68
62
|
}
|
|
69
63
|
fillCircle(enabledElement, operationData, true);
|
|
70
64
|
}
|
|
71
65
|
export function fillOutsideCircle(enabledElement, operationData) {
|
|
72
66
|
throw new Error('Not yet implemented');
|
|
73
67
|
}
|
|
68
|
+
function getCenter(points) {
|
|
69
|
+
const center = vec3.fromValues(0, 0, 0);
|
|
70
|
+
points.forEach((point) => {
|
|
71
|
+
vec3.add(center, center, point);
|
|
72
|
+
});
|
|
73
|
+
vec3.scale(center, center, 1 / points.length);
|
|
74
|
+
return center;
|
|
75
|
+
}
|
|
76
|
+
function getEllipse(viewport, imageData, points) {
|
|
77
|
+
const center = getCenter(points);
|
|
78
|
+
const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
|
|
79
|
+
const dimensions = imageData.getDimensions();
|
|
80
|
+
const [topLeftCanvas, bottomRightCanvas] = getCanvasEllipseCorners(canvasCoordinates);
|
|
81
|
+
const topLeftWorld = viewport.canvasToWorld(topLeftCanvas);
|
|
82
|
+
const bottomRightWorld = viewport.canvasToWorld(bottomRightCanvas);
|
|
83
|
+
const ellipsoidCornersIJK = [
|
|
84
|
+
transformWorldToIndex(imageData, topLeftWorld),
|
|
85
|
+
transformWorldToIndex(imageData, bottomRightWorld),
|
|
86
|
+
];
|
|
87
|
+
const boundsIJK = getBoundingBoxAroundShape(ellipsoidCornersIJK, dimensions);
|
|
88
|
+
if (boundsIJK.every(([min, max]) => min !== max)) {
|
|
89
|
+
throw new Error('Oblique segmentation tools are not supported yet');
|
|
90
|
+
}
|
|
91
|
+
const ellipseObj = {
|
|
92
|
+
center: center,
|
|
93
|
+
xRadius: Math.abs(topLeftWorld[0] - bottomRightWorld[0]) / 2,
|
|
94
|
+
yRadius: Math.abs(topLeftWorld[1] - bottomRightWorld[1]) / 2,
|
|
95
|
+
zRadius: Math.abs(topLeftWorld[2] - bottomRightWorld[2]) / 2,
|
|
96
|
+
};
|
|
97
|
+
return { ellipseObj, boundsIJK };
|
|
98
|
+
}
|
|
74
99
|
//# sourceMappingURL=fillCircle.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"fillCircle.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillCircle.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAE3D,OAAO,EACL,uBAAuB,EACvB,cAAc,GACf,MAAM,iCAAiC,CAAC;AACzC,OAAO,EAAE,yBAAyB,EAAE,MAAM,gCAAgC,CAAC;AAC3E,OAAO,EAAE,+BAA+B,EAAE,MAAM,iEAAiE,CAAC;AAClH,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAC1D,OAAO,iBAAiB,MAAM,2BAA2B,CAAC;AAE1D,MAAM,EAAE,qBAAqB,EAAE,GAAG,OAAO,CAAC;
|
|
1
|
+
{"version":3,"file":"fillCircle.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillCircle.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,EAAE,KAAK,EAAE,MAAM,qBAAqB,CAAC;AAC5C,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAE3D,OAAO,EACL,uBAAuB,EACvB,cAAc,GACf,MAAM,iCAAiC,CAAC;AACzC,OAAO,EAAE,yBAAyB,EAAE,MAAM,gCAAgC,CAAC;AAC3E,OAAO,EAAE,+BAA+B,EAAE,MAAM,iEAAiE,CAAC;AAClH,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAC1D,OAAO,iBAAiB,MAAM,2BAA2B,CAAC;AAE1D,OAAO,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC1D,OAAO,EAAE,oBAAoB,EAAE,MAAM,0BAA0B,CAAC;AAEhE,MAAM,EAAE,qBAAqB,EAAE,GAAG,OAAO,CAAC;AAM1C,SAAS,UAAU,CACjB,cAAqC,EACrC,aAA4B,EAC5B,SAAS,GAAG,KAAK;IAEjB,MAAM,EACJ,MAAM,EACN,cAAc,EACd,YAAY,EACZ,cAAc,EACd,6BAA6B,GAC9B,GAAG,aAAa,CAAC;IAElB,MAAM,EAAE,QAAQ,EAAE,GAAG,cAAc,CAAC;IACpC,MAAM,IAAI,GAAG,eAAe,CAAC,EAAE,aAAa,EAAE,QAAQ,EAAE,CAAC,CAAC;IAE1D,IAAI,CAAC,IAAI,EAAE;QACT,OAAO,CAAC,IAAI,CAAC,8BAA8B,CAAC,CAAC;QAC7C,OAAO;KACR;IAED,MAAM,EAAE,eAAe,EAAE,qBAAqB,EAAE,sBAAsB,EAAE,GACtE,IAAI,CAAC;IAEP,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,GAAG,UAAU,CAC1C,QAAQ,EACR,qBAAqB,EACrB,MAAM,CACP,CAAC;IAEF,MAAM,mBAAmB,GAAG,IAAI,GAAG,EAAiB,CAAC;IAErD,IAAI,QAAQ,CAAC;IAEb,IAAI,SAAS,EAAE;QACb,QAAQ,GAAG,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE;YACxC,IAAI,cAAc,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;gBAClC,OAAO;aACR;YAED,IACE,iBAAiB,CAAC,KAAK,EAAE,eAAe,EAAE,6BAA6B,CAAC,EACxE;gBACA,sBAAsB,CAAC,KAAK,CAAC,GAAG,YAAY,CAAC;gBAE7C,mBAAmB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;aACtC;QACH,CAAC,CAAC;KACH;SAAM;QACL,QAAQ,GAAG,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE;YACxC,IAAI,cAAc,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;gBAClC,OAAO;aACR;YACD,sBAAsB,CAAC,KAAK,CAAC,GAAG,YAAY,CAAC;YAC7C,mBAAmB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;QACvC,CAAC,CAAC;KACH;IAED,oBAAoB,CAClB,qBAAqB,EACrB,CAAC,QAAQ,EAAE,EAAE,CACX,cAAc,CAAC,UAAU,EAAE,QAAQ,EAAE;QACnC,IAAI,EAAE,IAAI;KACX,CAAC,EACJ,QAAQ,EACR,SAAS,CACV,CAAC;IAEF,MAAM,aAAa,GAAa,KAAK,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAC;IAEhE,+BAA+B,CAAC,cAAc,EAAE,aAAa,CAAC,CAAC;AACjE,CAAC;AAQD,MAAM,UAAU,gBAAgB,CAC9B,cAAqC,EACrC,aAA4B;IAE5B,UAAU,CAAC,cAAc,EAAE,aAAa,EAAE,KAAK,CAAC,CAAC;AACnD,CAAC;AAQD,MAAM,UAAU,qBAAqB,CACnC,cAAqC,EACrC,aAA4B;IAE5B,IAAI,oBAAoB,CAAC,aAAa,CAAC,EAAE;QACvC,MAAM,EAAE,kBAAkB,EAAE,QAAQ,EAAE,GAAG,aAAa,CAAC;QAEvD,MAAM,WAAW,GAAG,KAAK,CAAC,SAAS,CAAC,kBAAkB,CAAC,CAAC;QACxD,MAAM,YAAY,GAAG,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC;QAE/C,IACE,CAAC,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,UAAU,EAAE,WAAW,CAAC,UAAU,CAAC;YACjE,CAAC,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,SAAS,EAAE,WAAW,CAAC,SAAS,CAAC,EAC/D;YACA,MAAM,IAAI,KAAK,CACb,gGAAgG,CACjG,CAAC;SACH;KACF;IAED,UAAU,CAAC,cAAc,EAAE,aAAa,EAAE,IAAI,CAAC,CAAC;AAClD,CAAC;AAQD,MAAM,UAAU,iBAAiB,CAC/B,cAAqC,EACrC,aAA4B;IAE5B,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAC;AACzC,CAAC;AAQD,SAAS,SAAS,CAAC,MAAM;IAEvB,MAAM,MAAM,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;IACxC,MAAM,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;QACvB,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;IAClC,CAAC,CAAC,CAAC;IACH,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC;IAC9C,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,SAAS,UAAU,CAAC,QAAQ,EAAE,SAAS,EAAE,MAAM;IAC7C,MAAM,MAAM,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC;IACjC,MAAM,iBAAiB,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC;IACvE,MAAM,UAAU,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IAI7C,MAAM,CAAC,aAAa,EAAE,iBAAiB,CAAC,GACtC,uBAAuB,CAAC,iBAAiB,CAAC,CAAC;IAG7C,MAAM,YAAY,GAAG,QAAQ,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC;IAC3D,MAAM,gBAAgB,GAAG,QAAQ,CAAC,aAAa,CAAC,iBAAiB,CAAC,CAAC;IAEnE,MAAM,mBAAmB,GAAG;QACZ,qBAAqB,CAAC,SAAS,EAAE,YAAY,CAAC;QAC9C,qBAAqB,CAAC,SAAS,EAAE,gBAAgB,CAAC;KACjE,CAAC;IAEF,MAAM,SAAS,GAAG,yBAAyB,CAAC,mBAAmB,EAAE,UAAU,CAAC,CAAC;IAE7E,IAAI,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,EAAE;QAChD,MAAM,IAAI,KAAK,CAAC,kDAAkD,CAAC,CAAC;KACrE;IAGD,MAAM,UAAU,GAAG;QACjB,MAAM,EAAE,MAAsB;QAC9B,OAAO,EAAE,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,gBAAgB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;QAC5D,OAAO,EAAE,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,gBAAgB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;QAC5D,OAAO,EAAE,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,gBAAgB,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;KAC7D,CAAC;IACF,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,CAAC;AACnC,CAAC"}
|
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@@ -2,34 +2,42 @@ import { utilities as csUtils } from '@cornerstonejs/core';
|
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2
2
|
import { getBoundingBoxAroundShape } from '../../../utilities/boundingBox';
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3
3
|
import { pointInShapeCallback } from '../../../utilities';
|
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4
4
|
import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
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+
import { getStrategyData } from './utils/getStrategyData';
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5
6
|
const { transformWorldToIndex } = csUtils;
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7
|
function fillRectangle(enabledElement, operationData, inside = true) {
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const {
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const
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|
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const { points, segmentsLocked, segmentIndex, segmentationId, constraintFn } = operationData;
|
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9
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const strategyData = getStrategyData({
|
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operationData,
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viewport: enabledElement.viewport,
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});
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if (!strategyData) {
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console.warn('No data found for fillRectangle');
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return;
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}
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const { segmentationImageData, segmentationScalarData } = strategyData;
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let rectangleCornersIJK = points.map((world) => {
|
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return transformWorldToIndex(
|
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+
return transformWorldToIndex(segmentationImageData, world);
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});
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|
rectangleCornersIJK = rectangleCornersIJK.map((point) => {
|
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return point.map((coord) => {
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return Math.round(coord);
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});
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});
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-
const boundsIJK = getBoundingBoxAroundShape(rectangleCornersIJK,
|
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+
const boundsIJK = getBoundingBoxAroundShape(rectangleCornersIJK, segmentationImageData.getDimensions());
|
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27
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const pointInRectangle = () => true;
|
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28
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const callback = ({ value, index, pointIJK }) => {
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if (segmentsLocked.includes(value)) {
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return;
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}
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if (!constraintFn) {
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-
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+
segmentationScalarData[index] = segmentIndex;
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return;
|
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}
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36
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if (constraintFn(pointIJK)) {
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-
|
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+
segmentationScalarData[index] = segmentIndex;
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}
|
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};
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|
-
pointInShapeCallback(
|
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+
pointInShapeCallback(segmentationImageData, pointInRectangle, callback, boundsIJK);
|
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33
41
|
triggerSegmentationDataModified(segmentationId);
|
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42
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}
|
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43
|
export function fillInsideRectangle(enabledElement, operationData) {
|
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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"fillRectangle.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillRectangle.ts"],"names":[],"mappings":"AAAA,OAAO,
|
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1
|
+
{"version":3,"file":"fillRectangle.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillRectangle.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAG3D,OAAO,EAAE,yBAAyB,EAAE,MAAM,gCAAgC,CAAC;AAC3E,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAC1D,OAAO,EAAE,+BAA+B,EAAE,MAAM,iEAAiE,CAAC;AAElH,OAAO,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAE1D,MAAM,EAAE,qBAAqB,EAAE,GAAG,OAAO,CAAC;AAe1C,SAAS,aAAa,CACpB,cAAqC,EACrC,aAA4B,EAC5B,MAAM,GAAG,IAAI;IAEb,MAAM,EAAE,MAAM,EAAE,cAAc,EAAE,YAAY,EAAE,cAAc,EAAE,YAAY,EAAE,GAC1E,aAAa,CAAC;IAEhB,MAAM,YAAY,GAAG,eAAe,CAAC;QACnC,aAAa;QACb,QAAQ,EAAE,cAAc,CAAC,QAAQ;KAClC,CAAC,CAAC;IAEH,IAAI,CAAC,YAAY,EAAE;QACjB,OAAO,CAAC,IAAI,CAAC,iCAAiC,CAAC,CAAC;QAChD,OAAO;KACR;IAED,MAAM,EAAE,qBAAqB,EAAE,sBAAsB,EAAE,GAAG,YAAY,CAAC;IAEvE,IAAI,mBAAmB,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE;QAC7C,OAAO,qBAAqB,CAAC,qBAAqB,EAAE,KAAK,CAAC,CAAC;IAC7D,CAAC,CAAC,CAAC;IAGH,mBAAmB,GAAG,mBAAmB,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE;QACtD,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE;YACzB,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;QAC3B,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IAEH,MAAM,SAAS,GAAG,yBAAyB,CACzC,mBAAmB,EACnB,qBAAqB,CAAC,aAAa,EAAE,CACtC,CAAC;IAGF,MAAM,gBAAgB,GAAG,GAAG,EAAE,CAAC,IAAI,CAAC;IAEpC,MAAM,QAAQ,GAAG,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE;QAC9C,IAAI,cAAc,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;YAClC,OAAO;SACR;QAED,IAAI,CAAC,YAAY,EAAE;YACjB,sBAAsB,CAAC,KAAK,CAAC,GAAG,YAAY,CAAC;YAC7C,OAAO;SACR;QAED,IAAI,YAAY,CAAC,QAAQ,CAAC,EAAE;YAC1B,sBAAsB,CAAC,KAAK,CAAC,GAAG,YAAY,CAAC;SAC9C;IACH,CAAC,CAAC;IAEF,oBAAoB,CAClB,qBAAqB,EACrB,gBAAgB,EAChB,QAAQ,EACR,SAAS,CACV,CAAC;IAEF,+BAA+B,CAAC,cAAc,CAAC,CAAC;AAClD,CAAC;AASD,MAAM,UAAU,mBAAmB,CACjC,cAAqC,EACrC,aAA4B;IAE5B,aAAa,CAAC,cAAc,EAAE,aAAa,EAAE,IAAI,CAAC,CAAC;AACrD,CAAC;AASD,MAAM,UAAU,oBAAoB,CAClC,cAAqC,EACrC,aAA4B;IAE5B,aAAa,CAAC,cAAc,EAAE,aAAa,EAAE,KAAK,CAAC,CAAC;AACtD,CAAC"}
|
|
@@ -1,21 +1,27 @@
|
|
|
1
|
-
import { utilities as csUtils } from '@cornerstonejs/core';
|
|
1
|
+
import { cache, utilities as csUtils } from '@cornerstonejs/core';
|
|
2
2
|
import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
|
|
3
3
|
import { pointInSurroundingSphereCallback } from '../../../utilities';
|
|
4
4
|
import isWithinThreshold from './utils/isWithinThreshold';
|
|
5
|
+
import { getStrategyData } from './utils/getStrategyData';
|
|
6
|
+
import { isVolumeSegmentation } from './utils/stackVolumeCheck';
|
|
5
7
|
function fillSphere(enabledElement, operationData, _inside = true, threshold = false) {
|
|
6
8
|
const { viewport } = enabledElement;
|
|
7
|
-
const {
|
|
8
|
-
const {
|
|
9
|
-
|
|
9
|
+
const { segmentsLocked, segmentIndex, strategySpecificConfiguration, points, } = operationData;
|
|
10
|
+
const strategyData = getStrategyData({ operationData, viewport });
|
|
11
|
+
if (!strategyData) {
|
|
12
|
+
console.warn('No data found for fillSphere');
|
|
13
|
+
return;
|
|
14
|
+
}
|
|
15
|
+
const { imageScalarData, segmentationImageData, segmentationScalarData } = strategyData;
|
|
10
16
|
const scalarIndex = [];
|
|
11
17
|
let callback;
|
|
12
18
|
if (threshold) {
|
|
13
|
-
callback = ({ value, index
|
|
19
|
+
callback = ({ value, index }) => {
|
|
14
20
|
if (segmentsLocked.includes(value)) {
|
|
15
21
|
return;
|
|
16
22
|
}
|
|
17
|
-
if (isWithinThreshold(index,
|
|
18
|
-
|
|
23
|
+
if (isWithinThreshold(index, imageScalarData, strategySpecificConfiguration)) {
|
|
24
|
+
segmentationScalarData[index] = segmentIndex;
|
|
19
25
|
scalarIndex.push(index);
|
|
20
26
|
}
|
|
21
27
|
};
|
|
@@ -25,25 +31,33 @@ function fillSphere(enabledElement, operationData, _inside = true, threshold = f
|
|
|
25
31
|
if (segmentsLocked.includes(value)) {
|
|
26
32
|
return;
|
|
27
33
|
}
|
|
28
|
-
|
|
34
|
+
segmentationScalarData[index] = segmentIndex;
|
|
29
35
|
scalarIndex.push(index);
|
|
30
36
|
};
|
|
31
37
|
}
|
|
32
|
-
pointInSurroundingSphereCallback(
|
|
33
|
-
const
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
|
|
38
|
+
pointInSurroundingSphereCallback(segmentationImageData, [points[0], points[1]], callback, viewport);
|
|
39
|
+
const dimensions = segmentationImageData.getDimensions();
|
|
40
|
+
let sliceArray;
|
|
41
|
+
if (isVolumeSegmentation(operationData)) {
|
|
42
|
+
const zMultiple = dimensions[0] * dimensions[1];
|
|
43
|
+
const minSlice = Math.floor(scalarIndex[0] / zMultiple);
|
|
44
|
+
const maxSlice = Math.floor(scalarIndex[scalarIndex.length - 1] / zMultiple);
|
|
45
|
+
sliceArray = Array.from({ length: maxSlice - minSlice + 1 }, (v, k) => k + minSlice);
|
|
46
|
+
triggerSegmentationDataModified(operationData.volumeId, sliceArray);
|
|
47
|
+
}
|
|
38
48
|
}
|
|
39
49
|
export function fillInsideSphere(enabledElement, operationData) {
|
|
40
50
|
fillSphere(enabledElement, operationData, true);
|
|
41
51
|
}
|
|
42
52
|
export function thresholdInsideSphere(enabledElement, operationData) {
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
53
|
+
if (isVolumeSegmentation(operationData)) {
|
|
54
|
+
const { referencedVolumeId, volumeId } = operationData;
|
|
55
|
+
const imageVolume = cache.getVolume(referencedVolumeId);
|
|
56
|
+
const segmentation = cache.getVolume(volumeId);
|
|
57
|
+
if (!csUtils.isEqual(segmentation.dimensions, imageVolume.dimensions) ||
|
|
58
|
+
!csUtils.isEqual(segmentation.direction, imageVolume.direction)) {
|
|
59
|
+
throw new Error('Only source data the same dimensions/size/orientation as the segmentation currently supported.');
|
|
60
|
+
}
|
|
47
61
|
}
|
|
48
62
|
fillSphere(enabledElement, operationData, true, true);
|
|
49
63
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"fillSphere.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillSphere.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;
|
|
1
|
+
{"version":3,"file":"fillSphere.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/fillSphere.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAElE,OAAO,EAAE,+BAA+B,EAAE,MAAM,iEAAiE,CAAC;AAClH,OAAO,EAAE,gCAAgC,EAAE,MAAM,oBAAoB,CAAC;AACtE,OAAO,iBAAiB,MAAM,2BAA2B,CAAC;AAE1D,OAAO,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC1D,OAAO,EAAE,oBAAoB,EAAE,MAAM,0BAA0B,CAAC;AAMhE,SAAS,UAAU,CACjB,cAAqC,EACrC,aAA4B,EAC5B,OAAO,GAAG,IAAI,EACd,SAAS,GAAG,KAAK;IAEjB,MAAM,EAAE,QAAQ,EAAE,GAAG,cAAc,CAAC;IACpC,MAAM,EACJ,cAAc,EACd,YAAY,EACZ,6BAA6B,EAC7B,MAAM,GACP,GAAG,aAAa,CAAC;IAElB,MAAM,YAAY,GAAG,eAAe,CAAC,EAAE,aAAa,EAAE,QAAQ,EAAE,CAAC,CAAC;IAElE,IAAI,CAAC,YAAY,EAAE;QACjB,OAAO,CAAC,IAAI,CAAC,8BAA8B,CAAC,CAAC;QAC7C,OAAO;KACR;IAED,MAAM,EAAE,eAAe,EAAE,qBAAqB,EAAE,sBAAsB,EAAE,GACtE,YAAY,CAAC;IAEf,MAAM,WAAW,GAAG,EAAE,CAAC;IAEvB,IAAI,QAAQ,CAAC;IAEb,IAAI,SAAS,EAAE;QACb,QAAQ,GAAG,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,EAAE;YAC9B,IAAI,cAAc,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;gBAClC,OAAO;aACR;YAED,IACE,iBAAiB,CAAC,KAAK,EAAE,eAAe,EAAE,6BAA6B,CAAC,EACxE;gBACA,sBAAsB,CAAC,KAAK,CAAC,GAAG,YAAY,CAAC;gBAC7C,WAAW,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;aACzB;QACH,CAAC,CAAC;KACH;SAAM;QACL,QAAQ,GAAG,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,EAAE;YAC9B,IAAI,cAAc,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;gBAClC,OAAO;aACR;YACD,sBAAsB,CAAC,KAAK,CAAC,GAAG,YAAY,CAAC;YAC7C,WAAW,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAC1B,CAAC,CAAC;KACH;IAED,gCAAgC,CAC9B,qBAAqB,EACrB,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,EACtB,QAAQ,EACR,QAAiC,CAClC,CAAC;IAEF,MAAM,UAAU,GAAG,qBAAqB,CAAC,aAAa,EAAE,CAAC;IAEzD,IAAI,UAAU,CAAC;IACf,IAAI,oBAAoB,CAAC,aAAa,CAAC,EAAE;QAIvC,MAAM,SAAS,GAAG,UAAU,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;QAChD,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,CAAC;QACxD,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CACzB,WAAW,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,SAAS,CAChD,CAAC;QACF,UAAU,GAAG,KAAK,CAAC,IAAI,CACrB,EAAE,MAAM,EAAE,QAAQ,GAAG,QAAQ,GAAG,CAAC,EAAE,EACnC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,QAAQ,CACvB,CAAC;QACF,+BAA+B,CAAC,aAAa,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC;KACrE;AACH,CAAC;AAQD,MAAM,UAAU,gBAAgB,CAC9B,cAAqC,EACrC,aAA4B;IAE5B,UAAU,CAAC,cAAc,EAAE,aAAa,EAAE,IAAI,CAAC,CAAC;AAClD,CAAC;AAQD,MAAM,UAAU,qBAAqB,CACnC,cAAqC,EACrC,aAA4B;IAE5B,IAAI,oBAAoB,CAAC,aAAa,CAAC,EAAE;QACvC,MAAM,EAAE,kBAAkB,EAAE,QAAQ,EAAE,GAAG,aAAa,CAAC;QAEvD,MAAM,WAAW,GAAG,KAAK,CAAC,SAAS,CAAC,kBAAkB,CAAC,CAAC;QACxD,MAAM,YAAY,GAAG,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC;QAE/C,IACE,CAAC,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,UAAU,EAAE,WAAW,CAAC,UAAU,CAAC;YACjE,CAAC,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,SAAS,EAAE,WAAW,CAAC,SAAS,CAAC,EAC/D;YACA,MAAM,IAAI,KAAK,CACb,gGAAgG,CACjG,CAAC;SACH;KACF;IAED,UAAU,CAAC,cAAc,EAAE,aAAa,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;AACxD,CAAC;AAQD,MAAM,UAAU,iBAAiB,CAC/B,cAAqC,EACrC,aAA4B;IAE5B,UAAU,CAAC,cAAc,EAAE,aAAa,EAAE,KAAK,CAAC,CAAC;AACnD,CAAC"}
|
|
@@ -0,0 +1,40 @@
|
|
|
1
|
+
import { cache } from '@cornerstonejs/core';
|
|
2
|
+
import { isVolumeSegmentation } from './stackVolumeCheck';
|
|
3
|
+
function getStrategyData({ operationData, viewport }) {
|
|
4
|
+
let segmentationImageData, segmentationScalarData, imageScalarData;
|
|
5
|
+
if (isVolumeSegmentation(operationData)) {
|
|
6
|
+
const { volumeId, referencedVolumeId } = operationData;
|
|
7
|
+
const segmentationVolume = cache.getVolume(volumeId);
|
|
8
|
+
const imageVolume = cache.getVolume(referencedVolumeId);
|
|
9
|
+
if (!segmentationVolume || !imageVolume) {
|
|
10
|
+
return;
|
|
11
|
+
}
|
|
12
|
+
({ imageData: segmentationImageData } = segmentationVolume);
|
|
13
|
+
segmentationScalarData = segmentationVolume.getScalarData();
|
|
14
|
+
imageScalarData = imageVolume.getScalarData();
|
|
15
|
+
}
|
|
16
|
+
else {
|
|
17
|
+
const { imageIdReferenceMap, segmentationRepresentationUID } = operationData;
|
|
18
|
+
if (!imageIdReferenceMap) {
|
|
19
|
+
return;
|
|
20
|
+
}
|
|
21
|
+
const currentImageId = viewport.getCurrentImageId();
|
|
22
|
+
if (!currentImageId) {
|
|
23
|
+
return;
|
|
24
|
+
}
|
|
25
|
+
const actor = viewport.getActor(segmentationRepresentationUID);
|
|
26
|
+
segmentationImageData = actor.actor.getMapper().getInputData();
|
|
27
|
+
const currentSegmentationImageId = imageIdReferenceMap.get(currentImageId);
|
|
28
|
+
const segmentationImage = cache.getImage(currentSegmentationImageId);
|
|
29
|
+
segmentationScalarData = segmentationImage.getPixelData();
|
|
30
|
+
const image = cache.getImage(currentImageId);
|
|
31
|
+
imageScalarData = image.getPixelData();
|
|
32
|
+
}
|
|
33
|
+
return {
|
|
34
|
+
segmentationImageData,
|
|
35
|
+
segmentationScalarData,
|
|
36
|
+
imageScalarData,
|
|
37
|
+
};
|
|
38
|
+
}
|
|
39
|
+
export { getStrategyData };
|
|
40
|
+
//# sourceMappingURL=getStrategyData.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"getStrategyData.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/getStrategyData.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,qBAAqB,CAAC;AAC5C,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAG1D,SAAS,eAAe,CAAC,EAAE,aAAa,EAAE,QAAQ,EAAE;IAClD,IAAI,qBAAqB,EAAE,sBAAsB,EAAE,eAAe,CAAC;IACnE,IAAI,oBAAoB,CAAC,aAAa,CAAC,EAAE;QACvC,MAAM,EAAE,QAAQ,EAAE,kBAAkB,EAAE,GAAG,aAAa,CAAC;QAEvD,MAAM,kBAAkB,GAAG,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC;QACrD,MAAM,WAAW,GAAG,KAAK,CAAC,SAAS,CAAC,kBAAkB,CAAC,CAAC;QAExD,IAAI,CAAC,kBAAkB,IAAI,CAAC,WAAW,EAAE;YACvC,OAAO;SACR;QAED,CAAC,EAAE,SAAS,EAAE,qBAAqB,EAAE,GAAG,kBAAkB,CAAC,CAAC;QAC5D,sBAAsB,GAAG,kBAAkB,CAAC,aAAa,EAAE,CAAC;QAC5D,eAAe,GAAG,WAAW,CAAC,aAAa,EAAE,CAAC;KAC/C;SAAM;QACL,MAAM,EAAE,mBAAmB,EAAE,6BAA6B,EAAE,GAC1D,aAA+C,CAAC;QAElD,IAAI,CAAC,mBAAmB,EAAE;YACxB,OAAO;SACR;QAED,MAAM,cAAc,GAAG,QAAQ,CAAC,iBAAiB,EAAE,CAAC;QACpD,IAAI,CAAC,cAAc,EAAE;YACnB,OAAO;SACR;QAKD,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,6BAA6B,CAAC,CAAC;QAC/D,qBAAqB,GAAG,KAAK,CAAC,KAAK,CAAC,SAAS,EAAE,CAAC,YAAY,EAAE,CAAC;QAC/D,MAAM,0BAA0B,GAAG,mBAAmB,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;QAE3E,MAAM,iBAAiB,GAAG,KAAK,CAAC,QAAQ,CAAC,0BAA0B,CAAC,CAAC;QACrE,sBAAsB,GAAG,iBAAiB,CAAC,YAAY,EAAE,CAAC;QAE1D,MAAM,KAAK,GAAG,KAAK,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC;QAK7C,eAAe,GAAG,KAAK,CAAC,YAAY,EAAE,CAAC;KACxC;IAED,OAAO;QACL,qBAAqB;QACrB,sBAAsB;QACtB,eAAe;KAChB,CAAC;AACJ,CAAC;AAED,OAAO,EAAE,eAAe,EAAE,CAAC"}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
function isWithinThreshold(index,
|
|
1
|
+
function isWithinThreshold(index, imageScalarData, strategySpecificConfiguration) {
|
|
2
2
|
const { THRESHOLD_INSIDE_CIRCLE } = strategySpecificConfiguration;
|
|
3
|
-
const voxelValue =
|
|
3
|
+
const voxelValue = imageScalarData[index];
|
|
4
4
|
const { threshold } = THRESHOLD_INSIDE_CIRCLE;
|
|
5
5
|
return threshold[0] <= voxelValue && voxelValue <= threshold[1];
|
|
6
6
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"isWithinThreshold.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/isWithinThreshold.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"isWithinThreshold.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/isWithinThreshold.ts"],"names":[],"mappings":"AAGA,SAAS,iBAAiB,CACxB,KAAa,EACb,eAA2B,EAC3B,6BAAkC;IAElC,MAAM,EAAE,uBAAuB,EAAE,GAAG,6BAA6B,CAAC;IAElE,MAAM,UAAU,GAAG,eAAe,CAAC,KAAK,CAAC,CAAC;IAC1C,MAAM,EAAE,SAAS,EAAE,GAAG,uBAAuB,CAAC;IAE9C,OAAO,SAAS,CAAC,CAAC,CAAC,IAAI,UAAU,IAAI,UAAU,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC;AAClE,CAAC;AAED,eAAe,iBAAiB,CAAC"}
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
function isStackSegmentation(operationData) {
|
|
2
|
+
return (operationData.imageIdReferenceMap !==
|
|
3
|
+
undefined);
|
|
4
|
+
}
|
|
5
|
+
function isVolumeSegmentation(operationData) {
|
|
6
|
+
return (operationData.volumeId !== undefined);
|
|
7
|
+
}
|
|
8
|
+
export { isStackSegmentation, isVolumeSegmentation };
|
|
9
|
+
//# sourceMappingURL=stackVolumeCheck.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"stackVolumeCheck.js","sourceRoot":"","sources":["../../../../../../src/tools/segmentation/strategies/utils/stackVolumeCheck.ts"],"names":[],"mappings":"AAWA,SAAS,mBAAmB,CAC1B,aAAmE;IAInE,OAAO,CACJ,aAAgD,CAAC,mBAAmB;QACrE,SAAS,CACV,CAAC;AACJ,CAAC;AAED,SAAS,oBAAoB,CAC3B,aAAmE;IAInE,OAAO,CACJ,aAAiD,CAAC,QAAQ,KAAK,SAAS,CAC1E,CAAC;AACJ,CAAC;AAED,OAAO,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,CAAC"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"LabelmapToolOperationData.js","sourceRoot":"","sources":["../../../src/types/LabelmapToolOperationData.ts"],"names":[],"mappings":""}
|