npm - @cornerstonejs/tools - Versions diffs - 1.32.3 → 1.34.0 - Mend

@cornerstonejs/tools 1.32.3 → 1.34.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (260) hide show

package/dist/esm/tools/displayTools/Labelmap/labelmapDisplay.js.map CHANGED Viewed

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package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js CHANGED Viewed

@@ -5,12 +5,13 @@ function validate(segmentationInput) {
     }
     const representationData = segmentationInput.representation
         .data;
-    if (!representationData.volumeId) {
-        throw new Error('The segmentationInput.representationData.volumeId is undefined, please provide a valid representationData.volumeId');
+    if ('volumeId' in representationData) {
+        const cachedVolume = cache.getVolume(representationData.volumeId);
+        if (!cachedVolume) {
+            throw new Error(`volumeId of ${representationData.volumeId} not found in cache, you should load and cache volume before adding segmentation`);
+        }
     }
-    const cachedVolume = cache.getVolume(representationData.volumeId);
-    if (!cachedVolume) {
-        throw new Error(`volumeId of ${representationData.volumeId} not found in cache, you should load and cache volume before adding segmentation`);
+    else {
     }
 }
 export default validate;

package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"validateRepresentationData.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/validateRepresentationData.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,MAAM,qBAAqB,CAAC;~~AAG5C~~,SAAS,QAAQ,CAAC,iBAA0C;IAC1D,IAAI,CAAC,iBAAiB,CAAC,cAAc,CAAC,IAAI,EAAE;QAC1C,MAAM,IAAI,KAAK,CACb,4GAA4G,CAC7G,CAAC;KACH;IAED,MAAM,kBAAkB,GAAG,iBAAiB,CAAC,cAAc;SACxD,IAAgC,CAAC;IAEpC,IAAI,~~CAAC~~,kBAAkB,~~CAAC,QAAQ,~~EAAE;~~QAChC~~,MAAM,~~IAAI,KAAK,CACb,oHAAoH,CACrH,CAAC;KACH;IAED,MAAM,~~YAAY,GAAG,KAAK,CAAC,SAAS,~~CAAC~~,~~kBAAkB~~,CAAC,QAAQ,~~CAAC~~,CAAC;~~IAElE~~,IAAI,CAAC,YAAY,EAAE;~~QACjB~~,MAAM,IAAI,KAAK,CACb,~~eAAe~~,~~kBAAkB~~,CAAC,~~QAAQ~~,kFAAkF,~~CAC7H~~,CAAC;~~KACH~~;AACH,CAAC;AAED,eAAe,QAAQ,CAAC"}
1	+ {"version":3,"file":"validateRepresentationData.js","sourceRoot":"","sources":["../../../../../src/tools/displayTools/Labelmap/validateRepresentationData.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,MAAM,qBAAqB,CAAC;AAM5C,SAAS,QAAQ,CAAC,iBAA0C;IAC1D,IAAI,CAAC,iBAAiB,CAAC,cAAc,CAAC,IAAI,EAAE;QAC1C,MAAM,IAAI,KAAK,CACb,4GAA4G,CAC7G,CAAC;KACH;IAED,MAAM,kBAAkB,GAAG,iBAAiB,CAAC,cAAc;SACxD,IAAgC,CAAC;IAEpC,IAAI,UAAU,IAAI,kBAAkB,EAAE;QAEpC,MAAM,YAAY,GAAG,KAAK,CAAC,SAAS,CACjC,kBAAqD,CAAC,QAAQ,CAChE,CAAC;QAEF,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CACb,eACG,kBAAqD,CAAC,QACzD,kFAAkF,CACnF,CAAC;SACH;KACF;SAAM;KAEN;AACH,CAAC;AAED,eAAe,QAAQ,CAAC"}

package/dist/esm/tools/segmentation/BrushTool.js CHANGED Viewed

@@ -1,15 +1,16 @@
-import { cache, getEnabledElement, StackViewport } from '@cornerstonejs/core';
+import { getEnabledElement } from '@cornerstonejs/core';
 import { vec3 } from 'gl-matrix';
 import { BaseTool } from '../base';
 import { fillInsideSphere, thresholdInsideSphere, } from './strategies/fillSphere';
 import { eraseInsideSphere } from './strategies/eraseSphere';
 import { thresholdInsideCircle, fillInsideCircle, } from './strategies/fillCircle';
 import { eraseInsideCircle } from './strategies/eraseCircle';
-import { Events, ToolModes } from '../../enums';
+import { Events, ToolModes, SegmentationRepresentations } from '../../enums';
 import { drawCircle as drawCircleSvg } from '../../drawingSvg';
 import { resetElementCursor, hideElementCursor, } from '../../cursors/elementCursor';
 import triggerAnnotationRenderForViewportUIDs from '../../utilities/triggerAnnotationRenderForViewportIds';
 import { config as segmentationConfig, segmentLocking, segmentIndex as segmentIndexController, state as segmentationState, activeSegmentation, } from '../../stateManagement/segmentation';
+import { isVolumeSegmentation } from './strategies/utils/stackVolumeCheck';
 class BrushTool extends BaseTool {
     constructor(toolProps = {}, defaultToolProps = {
         supportedInteractionTypes: ['Mouse', 'Touch'],
@@ -47,28 +48,46 @@ class BrushTool extends BaseTool {
             const { element } = eventData;
             const enabledElement = getEnabledElement(element);
             const { viewport, renderingEngine } = enabledElement;
-            if (viewport instanceof StackViewport) {
-                throw new Error('Not implemented yet');
-            }
             const toolGroupId = this.toolGroupId;
             const activeSegmentationRepresentation = activeSegmentation.getActiveSegmentationRepresentation(toolGroupId);
             if (!activeSegmentationRepresentation) {
                 throw new Error('No active segmentation detected, create one before using the brush tool');
             }
-            const { segmentationId, type } = activeSegmentationRepresentation;
+            const { segmentationId, type, segmentationRepresentationUID } = activeSegmentationRepresentation;
+            if (type === SegmentationRepresentations.Contour) {
+                throw new Error('Not implemented yet');
+            }
             const segmentsLocked = segmentLocking.getLockedSegments(segmentationId);
             const { representationData } = segmentationState.getSegmentation(segmentationId);
-            const { volumeId } = representationData[type];
-            const segmentation = cache.getVolume(volumeId);
-            const actors = viewport.getActors();
-            const firstVolumeActorUID = actors[0].uid;
-            const imageVolume = cache.getVolume(firstVolumeActorUID);
+            const labelmapData = representationData[SegmentationRepresentations.Labelmap];
             const viewportIdsToRender = [viewport.id];
-            this._editData = {
-                segmentation,
-                imageVolume,
-                segmentsLocked,
-            };
+            if (isVolumeSegmentation(labelmapData)) {
+                const { volumeId } = representationData[type];
+                const actors = viewport.getActors();
+                const firstVolumeActorUID = actors[0].uid;
+                this._editData = {
+                    volumeId,
+                    referencedVolumeId: firstVolumeActorUID,
+                    segmentsLocked,
+                    segmentationRepresentationUID,
+                };
+            }
+            else {
+                const { imageIdReferenceMap } = labelmapData;
+                const currentImageId = viewport.getCurrentImageId();
+                if (!imageIdReferenceMap.get(currentImageId)) {
+                    return;
+                }
+                if (this.configuration.activeStrategy.includes('SPHERE')) {
+                    console.warn('Sphere manipulation is not supported for this stack of images yet');
+                    return;
+                }
+                this._editData = {
+                    imageIdReferenceMap,
+                    segmentsLocked,
+                    segmentationRepresentationUID,
+                };
+            }
             this._activateDraw(element);
             hideElementCursor(element);
             evt.preventDefault();
@@ -85,18 +104,15 @@ class BrushTool extends BaseTool {
             const { element } = eventData;
             const enabledElement = getEnabledElement(element);
             const { renderingEngine } = enabledElement;
-            const { imageVolume, segmentation, segmentsLocked } = this._editData;
             this.updateCursor(evt);
             const { segmentIndex, segmentationId, segmentationRepresentationUID, brushCursor, viewportIdsToRender, } = this._hoverData;
             const { data } = brushCursor;
             const { viewPlaneNormal, viewUp } = brushCursor.metadata;
             triggerAnnotationRenderForViewportUIDs(renderingEngine, viewportIdsToRender);
             const operationData = {
+                ...this._editData,
                 points: data.handles.points,
-                volume: segmentation,
-                imageVolume,
                 segmentIndex,
-                segmentsLocked,
                 viewPlaneNormal,
                 toolGroupId: this.toolGroupId,
                 segmentationId,
@@ -109,25 +125,17 @@ class BrushTool extends BaseTool {
         this._endCallback = (evt) => {
             const eventData = evt.detail;
             const { element } = eventData;
-            const { imageVolume, segmentation, segmentsLocked } = this._editData;
             const { segmentIndex, segmentationId, segmentationRepresentationUID, brushCursor, } = this._hoverData;
             const { data } = brushCursor;
             const { viewPlaneNormal, viewUp } = brushCursor.metadata;
             this._deactivateDraw(element);
             resetElementCursor(element);
             const enabledElement = getEnabledElement(element);
-            const { viewport } = enabledElement;
-            this._editData = null;
             this.updateCursor(evt);
-            if (viewport instanceof StackViewport) {
-                throw new Error('Not implemented yet');
-            }
             const operationData = {
                 points: data.handles.points,
-                volume: segmentation,
-                imageVolume,
+                ...this._editData,
                 segmentIndex,
-                segmentsLocked,
                 viewPlaneNormal,
                 toolGroupId: this.toolGroupId,
                 segmentationId,
@@ -135,6 +143,7 @@ class BrushTool extends BaseTool {
                 viewUp,
                 strategySpecificConfiguration: this.configuration.strategySpecificConfiguration,
             };
+            this._editData = null;
             this.applyActiveStrategy(enabledElement, operationData);
         };
         this._activateDraw = (element) => {

package/dist/esm/tools/segmentation/BrushTool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/tools/segmentation/CircleScissorsTool.js CHANGED Viewed

@@ -1,4 +1,4 @@
-import { cache, getEnabledElement, StackViewport } from '@cornerstonejs/core';
+import { cache, getEnabledElement } from '@cornerstonejs/core';
 import { BaseTool } from '../base';
 import { fillInsideCircle } from './strategies/fillCircle';
 import { Events } from '../../enums';
@@ -7,6 +7,7 @@ import { resetElementCursor, hideElementCursor, } from '../../cursors/elementCur
 import triggerAnnotationRenderForViewportIds from '../../utilities/triggerAnnotationRenderForViewportIds';
 import { segmentLocking, activeSegmentation, segmentIndex as segmentIndexController, config as segmentationConfig, } from '../../stateManagement/segmentation';
 import { getSegmentation } from '../../stateManagement/segmentation/segmentationState';
+import { isVolumeSegmentation } from './strategies/utils/stackVolumeCheck';
 class CircleScissorsTool extends BaseTool {
     constructor(toolProps = {}, defaultToolProps = {
         supportedInteractionTypes: ['Mouse', 'Touch'],
@@ -39,8 +40,10 @@ class CircleScissorsTool extends BaseTool {
             const segmentsLocked = segmentLocking.getLockedSegments(segmentationId);
             const segmentColor = segmentationConfig.color.getColorForSegmentIndex(toolGroupId, segmentationRepresentationUID, segmentIndex);
             const { representationData } = getSegmentation(segmentationId);
-            const { volumeId } = representationData[type];
-            const segmentation = cache.getVolume(volumeId);
+            const labelmapData = representationData[type];
+            if (!labelmapData) {
+                throw new Error('No labelmap data found for the active segmentation, create one before using scissors tool');
+            }
             const annotation = {
                 invalidated: true,
                 highlighted: true,
@@ -64,7 +67,6 @@ class CircleScissorsTool extends BaseTool {
             const viewportIdsToRender = [viewport.id];
             this.editData = {
                 annotation,
-                segmentation,
                 centerCanvas: canvasPos,
                 segmentIndex,
                 segmentationId,
@@ -75,7 +77,24 @@ class CircleScissorsTool extends BaseTool {
                 movingTextBox: false,
                 newAnnotation: true,
                 hasMoved: false,
+                segmentationRepresentationUID,
             };
+            if (isVolumeSegmentation(labelmapData)) {
+                const { volumeId } = labelmapData;
+                const segmentation = cache.getVolume(volumeId);
+                this.editData = {
+                    ...this.editData,
+                    volumeId,
+                    referencedVolumeId: segmentation.referencedVolumeId,
+                };
+            }
+            else {
+                const { imageIdReferenceMap } = labelmapData;
+                this.editData = {
+                    ...this.editData,
+                    imageIdReferenceMap,
+                };
+            }
             this._activateDraw(element);
             hideElementCursor(element);
             evt.preventDefault();
@@ -122,7 +141,7 @@ class CircleScissorsTool extends BaseTool {
         this._endCallback = (evt) => {
             const eventDetail = evt.detail;
             const { element } = eventDetail;
-            const { annotation, newAnnotation, hasMoved, segmentation, segmentIndex, segmentsLocked, segmentationId, } = this.editData;
+            const { annotation, newAnnotation, hasMoved } = this.editData;
             const { data } = annotation;
             const { viewPlaneNormal, viewUp } = annotation.metadata;
             if (newAnnotation && !hasMoved) {
@@ -132,21 +151,14 @@ class CircleScissorsTool extends BaseTool {
             this._deactivateDraw(element);
             resetElementCursor(element);
             const enabledElement = getEnabledElement(element);
-            const { viewport } = enabledElement;
-            this.editData = null;
-            this.isDrawing = false;
-            if (viewport instanceof StackViewport) {
-                throw new Error('Not implemented yet');
-            }
             const operationData = {
+                ...this.editData,
                 points: data.handles.points,
-                volume: segmentation,
-                segmentIndex,
-                segmentsLocked,
                 viewPlaneNormal,
-                segmentationId,
                 viewUp,
             };
+            this.editData = null;
+            this.isDrawing = false;
             this.applyActiveStrategy(enabledElement, operationData);
         };
         this._activateDraw = (element) => {

package/dist/esm/tools/segmentation/CircleScissorsTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/esm/tools/segmentation/PaintFillTool.js CHANGED Viewed

@@ -1,9 +1,11 @@
 import { cache, getEnabledElement, utilities as csUtils, } from '@cornerstonejs/core';
 import { BaseTool } from '../base';
+import { SegmentationRepresentations } from '../../enums';
 import { triggerSegmentationDataModified } from '../../stateManagement/segmentation/triggerSegmentationEvents';
 import { segmentLocking, activeSegmentation, segmentIndex as segmentIndexController, } from '../../stateManagement/segmentation';
 import floodFill from '../../utilities/segmentation/floodFill';
 import { getSegmentation } from '../../stateManagement/segmentation/segmentationState';
+import { isVolumeSegmentation } from './strategies/utils/stackVolumeCheck';
 const { transformWorldToIndex, isEqual } = csUtils;
 class PaintFillTool extends BaseTool {
     constructor(toolProps = {}, defaultToolProps = {
@@ -27,11 +29,32 @@ class PaintFillTool extends BaseTool {
             const segmentIndex = segmentIndexController.getActiveSegmentIndex(segmentationId);
             const segmentsLocked = segmentLocking.getLockedSegments(segmentationId);
             const { representationData } = getSegmentation(segmentationId);
-            const { volumeId } = representationData[type];
-            const segmentation = cache.getVolume(volumeId);
-            const { dimensions, direction } = segmentation;
-            const scalarData = segmentation.getScalarData();
-            const index = transformWorldToIndex(segmentation.imageData, worldPos);
+            const labelmapData = representationData[SegmentationRepresentations.Labelmap];
+            let dimensions;
+            let direction;
+            let scalarData;
+            let index;
+            if (isVolumeSegmentation(labelmapData)) {
+                const { volumeId } = representationData[type];
+                const segmentation = cache.getVolume(volumeId);
+                ({ dimensions, direction } = segmentation);
+                scalarData = segmentation.getScalarData();
+                index = transformWorldToIndex(segmentation.imageData, worldPos);
+            }
+            else {
+                const { imageIdReferenceMap } = labelmapData;
+                const currentImageId = enabledElement.viewport.getCurrentImageId();
+                const currentSegmentationImageId = imageIdReferenceMap.get(currentImageId);
+                if (!currentSegmentationImageId) {
+                    throw new Error('No active segmentation imageId detected, create one before using scissors tool');
+                }
+                const segmentationImage = cache.getImage(currentSegmentationImageId);
+                scalarData = segmentationImage.getPixelData();
+                const { imageData } = viewport.getImageData();
+                dimensions = imageData.getDimensions();
+                direction = imageData.getDirection();
+                index = transformWorldToIndex(imageData, worldPos);
+            }
             const fixedDimension = this.getFixedDimension(viewPlaneNormal, direction);
             if (fixedDimension === undefined) {
                 console.warn('Oblique paint fill not yet supported');

package/dist/esm/tools/segmentation/PaintFillTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/esm/tools/segmentation/RectangleScissorsTool.js CHANGED Viewed

@@ -1,14 +1,15 @@
-import { cache, getEnabledElement, StackViewport } from '@cornerstonejs/core';
+import { cache, getEnabledElement } from '@cornerstonejs/core';
 import { BaseTool } from '../base';
 import { fillInsideRectangle } from './strategies/fillRectangle';
 import { eraseInsideRectangle } from './strategies/eraseRectangle';
 import { getViewportIdsWithToolToRender } from '../../utilities/viewportFilters';
-import { Events } from '../../enums';
+import { Events, SegmentationRepresentations } from '../../enums';
 import { drawRect as drawRectSvg } from '../../drawingSvg';
 import { resetElementCursor, hideElementCursor, } from '../../cursors/elementCursor';
 import triggerAnnotationRenderForViewportIds from '../../utilities/triggerAnnotationRenderForViewportIds';
 import { config as segmentationConfig, segmentLocking, segmentIndex as segmentIndexController, activeSegmentation, } from '../../stateManagement/segmentation';
 import { getSegmentation } from '../../stateManagement/segmentation/segmentationState';
+import { isVolumeSegmentation } from './strategies/utils/stackVolumeCheck';
 class RectangleScissorsTool extends BaseTool {
     constructor(toolProps = {}, defaultToolProps = {
         supportedInteractionTypes: ['Mouse', 'Touch'],
@@ -41,8 +42,7 @@ class RectangleScissorsTool extends BaseTool {
             const segmentsLocked = segmentLocking.getLockedSegments(segmentationId);
             const segmentColor = segmentationConfig.color.getColorForSegmentIndex(toolGroupId, segmentationRepresentationUID, segmentIndex);
             const { representationData } = getSegmentation(segmentationId);
-            const { volumeId } = representationData[type];
-            const segmentation = cache.getVolume(volumeId);
+            const labelmapData = representationData[SegmentationRepresentations.Labelmap];
             const annotation = {
                 highlighted: true,
                 invalidated: true,
@@ -69,17 +69,33 @@ class RectangleScissorsTool extends BaseTool {
             const viewportIdsToRender = getViewportIdsWithToolToRender(element, this.getToolName());
             this.editData = {
                 annotation,
-                segmentation,
                 segmentIndex,
+                segmentationId,
                 segmentsLocked,
                 segmentColor,
-                segmentationId,
                 viewportIdsToRender,
                 handleIndex: 3,
                 movingTextBox: false,
                 newAnnotation: true,
                 hasMoved: false,
+                segmentationRepresentationUID,
             };
+            if (isVolumeSegmentation(labelmapData)) {
+                const { volumeId } = labelmapData;
+                const segmentation = cache.getVolume(volumeId);
+                this.editData = {
+                    ...this.editData,
+                    volumeId,
+                    referencedVolumeId: segmentation.referencedVolumeId,
+                };
+            }
+            else {
+                const { imageIdReferenceMap } = labelmapData;
+                this.editData = {
+                    ...this.editData,
+                    imageIdReferenceMap,
+                };
+            }
             this._activateDraw(element);
             hideElementCursor(element);
             evt.preventDefault();
@@ -141,7 +157,7 @@ class RectangleScissorsTool extends BaseTool {
         this._endCallback = (evt) => {
             const eventDetail = evt.detail;
             const { element } = eventDetail;
-            const { annotation, newAnnotation, hasMoved, segmentation, segmentationId, segmentIndex, segmentsLocked, } = this.editData;
+            const { annotation, newAnnotation, hasMoved } = this.editData;
             const { data } = annotation;
             if (newAnnotation && !hasMoved) {
                 return;
@@ -150,19 +166,12 @@ class RectangleScissorsTool extends BaseTool {
             this._deactivateDraw(element);
             resetElementCursor(element);
             const enabledElement = getEnabledElement(element);
-            const { viewport } = enabledElement;
-            this.editData = null;
-            this.isDrawing = false;
-            if (viewport instanceof StackViewport) {
-                throw new Error('Not implemented yet');
-            }
             const operationData = {
+                ...this.editData,
                 points: data.handles.points,
-                volume: segmentation,
-                segmentationId,
-                segmentIndex,
-                segmentsLocked,
             };
+            this.editData = null;
+            this.isDrawing = false;
             this.applyActiveStrategy(enabledElement, operationData);
         };
         this._activateDraw = (element) => {

package/dist/esm/tools/segmentation/RectangleScissorsTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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